BLASTX nr result
ID: Stemona21_contig00009363
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00009363
(1465 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 367 7e-99
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 365 3e-98
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 363 1e-97
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 357 5e-96
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 341 4e-91
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 339 2e-90
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 337 1e-89
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 324 5e-86
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 324 5e-86
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 322 3e-85
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 315 4e-83
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 314 5e-83
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 306 2e-80
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 295 3e-77
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 295 3e-77
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 289 2e-75
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 289 2e-75
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 288 3e-75
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 288 5e-75
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 287 9e-75
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 367 bits (942), Expect = 7e-99
Identities = 208/428 (48%), Positives = 272/428 (63%), Gaps = 8/428 (1%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVRNISALIIHMA-RLA 1129
VE +L + EQ PPP+ R L +LGE+ L +L I+ ++RN+SALI +M + A
Sbjct: 9 VEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIRNLSALINYMVGKAA 68
Query: 1128 EPPATQHSAC----FSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVSEQ 961
+ A HS S PS T A ++ A S Q
Sbjct: 69 QGDAASHSPTPKHLISSPSSTPKKARRQ---------------------------ASSPQ 101
Query: 960 MVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CISEL 787
+VALGELEFRKAFLILSYIG + +D +S ++ILKL+ +PM +FE EVW+ +G I E
Sbjct: 102 LVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEE 161
Query: 786 DRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDED-SG 610
DR+++ +WDS KTH+YHCHV DG+ FKGPYL TRTHLQRVLGD+N+LLVKF ED +
Sbjct: 162 DRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTD 221
Query: 609 RNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTE 430
R+ N D N+ Y+KI +EGI VGLR+YRFFVFKDGG VKCYFV E
Sbjct: 222 RSSLNCSTDS-NASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFME 279
Query: 429 SCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVNI 250
S L K++ EAR IFMHAH VSS++KYMAR SLILSK++ LD++LS+VNI
Sbjct: 280 SS---------ALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNI 330
Query: 249 ERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQEIL 70
+R+DD P DEDG++VY+ED +P+I TDGTGFISEDLAL+CP N+ +G+ + + +L
Sbjct: 331 QRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDPLL 390
Query: 69 NGPNILNN 46
+ NN
Sbjct: 391 IQCRLFNN 398
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 365 bits (936), Expect = 3e-98
Identities = 206/416 (49%), Positives = 267/416 (64%), Gaps = 17/416 (4%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR-NISALIIHMARLA 1129
VE L++ + EQ+ PPD A R+L +LGED AL +L IAS +++ + S I ++ +
Sbjct: 19 VEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVKKR 78
Query: 1128 EPPATQ-HSACFSGPSVT---SPAAVQ--------EDY--NHSSLRHEXXXXXXXXXXXX 991
+ CFS S SP V +DY S + +
Sbjct: 79 NNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQDYVVKQSPVADQQPRGSPMSSISH 138
Query: 990 LRQAGAVSEQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWS 811
+ A Q VALGELEFRKAFLILSYIG N L++ I+ D+I +R + M FE EVW
Sbjct: 139 AMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWE 198
Query: 810 QIGC--ISELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVL 637
++G IS+ DRR +L+WDSGKTH+YHCH+ G CTFKGPYL TRTHLQR LGDDN+L
Sbjct: 199 KLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNIL 258
Query: 636 LVKFDEDSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXP 457
LVKFDE+ G +R + + S Y++I +EGILVGLR Y FFVFKDGG P
Sbjct: 259 LVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSP 318
Query: 456 VKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPL 277
VKCYFVR ES +D YIL K++ EAR +FMH TVSS++ YM+RLSLILSK++ L
Sbjct: 319 VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKL 378
Query: 276 DINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFK 109
+++ S +NIER++D PC D+DGN+VY +DGE +IHTDGTGFISEDLALKCP ++K
Sbjct: 379 EVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYK 433
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 363 bits (931), Expect = 1e-97
Identities = 206/418 (49%), Positives = 266/418 (63%), Gaps = 19/418 (4%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR-NISALIIHMARLA 1129
VE L++ + EQ+ PPD A R+L +LGED AL +L IAS +++ + S I ++ +
Sbjct: 19 VEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVKKR 78
Query: 1128 EPPATQ-HSACFSGPSVT---SPAAVQE----------DY--NHSSLRHEXXXXXXXXXX 997
+ CFS S SP V DY S + +
Sbjct: 79 NNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRGSPMSSI 138
Query: 996 XXLRQAGAVSEQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREV 817
+ A Q VALGELEFRKAFLILSYIG N L++ I+ D+I +R + M FE EV
Sbjct: 139 SHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEV 198
Query: 816 WSQIGC--ISELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDN 643
W ++G IS+ DRR +L+WDSGKTH+YHCH+ G CTFKGPYL TRTHLQR LGDDN
Sbjct: 199 WEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDN 258
Query: 642 VLLVKFDEDSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXX 463
+LLVKFDE+ G +R + + S Y++I +EGILVGLR Y FFVFKDGG
Sbjct: 259 ILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPST 318
Query: 462 XPVKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSI 283
PVKCYFVR ES +D YIL K++ EAR +FMH TVSS++ YM+RLSLILSK++
Sbjct: 319 SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTM 378
Query: 282 PLDINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFK 109
L+++ S +NIER++D PC D+DGN+VY +DGE +IHTDGTGFISEDLALKCP ++K
Sbjct: 379 KLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYK 435
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 357 bits (917), Expect = 5e-96
Identities = 205/419 (48%), Positives = 266/419 (63%), Gaps = 16/419 (3%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVRNISALIIHMA-RLA 1129
VE +L + EQ PPP+ R L +LGE+ L +L I+ ++RN+SALI +M + A
Sbjct: 9 VEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIRNLSALINYMVGKAA 68
Query: 1128 EPPATQHSAC----FSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVSEQ 961
+ A HS S PS T A ++ A S Q
Sbjct: 69 QGDAASHSPTPKHLISSPSSTPKKARRQ---------------------------ASSPQ 101
Query: 960 MVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CISEL 787
+VALGELEFRKAFLILSYIG + +D +S ++ILKL+ +PM +FE EVW+ +G I E
Sbjct: 102 LVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEE 161
Query: 786 DRRKNLEWDSGKTHVYHCHVDLDGACTFK--------GPYLQPTRTHLQRVLGDDNVLLV 631
DR+++ +WDS KTH+YHCHV DG+ FK GPYL TRTHLQRVLGD+N+LLV
Sbjct: 162 DRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLV 221
Query: 630 KFDED-SGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPV 454
KF ED + R+ N D N+ Y+KI +EGI VGLR+YRFFVFKDGG V
Sbjct: 222 KFAEDVTDRSSLNCSTDS-NASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-V 279
Query: 453 KCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLD 274
KCYFV ES L K++ EAR IFMHAH VSS++KYMAR SLILSK++ LD
Sbjct: 280 KCYFVFMESS---------ALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLD 330
Query: 273 INLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVL 97
++LS+VNI+R+DD P DEDG++VY+ED +P+I TDGTGFISEDLAL+CP N+ +G+ +
Sbjct: 331 VDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYM 389
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 341 bits (875), Expect = 4e-91
Identities = 191/417 (45%), Positives = 249/417 (59%), Gaps = 4/417 (0%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR-NISALIIHMARLA 1129
VEAL+ + +Q+ PPD + L A+GE AL+IL IA +R ++SA I +M +
Sbjct: 18 VEALINTICHDQNQLPPDFIIRQGLAAVGEQQALQILRTIAERPIRISLSAFIAYMLK-- 75
Query: 1128 EPPATQHSACFSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVSEQMVAL 949
+ S PS +S + + G S + AL
Sbjct: 76 ----NHRTVTSSTPSTSSTPST-------------------PLTPSPTRPGQTSSALHAL 112
Query: 948 GELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG---CISELDRR 778
GE+EFRKAFL LSYIGR L++ S D I L+ +PM FE+ +W G S+ DR+
Sbjct: 113 GEMEFRKAFLCLSYIGRESLENVASADCIRSLKDLPMATFEKTIWEAFGKDHIYSQSDRQ 172
Query: 777 KNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDEDSGRNRF 598
++WDSG+THVY C+V DG+ FKGP LQ T+THLQR LGDDNVLLVKF E+ N
Sbjct: 173 VYVDWDSGRTHVYQCYVSSDGSLRFKGPILQSTQTHLQRSLGDDNVLLVKFAENGIANNI 232
Query: 597 NQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTESCWS 418
+ +Y K GKEGI VGLR YRFFVFKDGG VKCYFVR +SCWS
Sbjct: 233 RTSAEEAYRLYGKFGKEGINVGLRLYRFFVFKDGGKEEKKKDPTSSSVKCYFVRMQSCWS 292
Query: 417 VDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVNIERVD 238
+D YIL K++ EAR +FMHAH + SL KYMAR SLILSK+ L+I+L++VN++ +
Sbjct: 293 IDGSANYILSNKTVSEARGLFMHAHLLPSLDKYMARFSLILSKTFKLNIDLATVNVQTIQ 352
Query: 237 DIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQEILN 67
D+ C DE+GNI+Y+ + +P I TDGTGFIS DLAL CP ++ KG L +QEI N
Sbjct: 353 DVYCQDENGNIIYDNE-KPRILTDGTGFISGDLALLCPNSVCKGNNLENNYIQEINN 408
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 339 bits (869), Expect = 2e-90
Identities = 195/424 (45%), Positives = 262/424 (61%), Gaps = 7/424 (1%)
Frame = -2
Query: 1296 LLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCR--VRNISALIIHMARLAEP 1123
LL + E+S PPPD R L + GED ALR+L IA C+ ++++ + ++ R P
Sbjct: 25 LLERICAERSQPPPDAELRRKLASAGEDEALRVLRTIADCKTKIKSLHGFVTYLLRQQPP 84
Query: 1122 PATQHSACFSGPSVTSPAA--VQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVSEQMVAL 949
P PS++SP+ V E+ SS GA QM AL
Sbjct: 85 P----------PSLSSPSRSPVPENSRPSS-----------SPGTFANSQGANGAQMEAL 123
Query: 948 GELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CISELDRRK 775
GELEFRK FLIL+YIGRN+LQ + ++I L+ + M FE++VW + G + + DRR
Sbjct: 124 GELEFRKQFLILNYIGRNELQSVTTAEEIRSLKNLSMVQFEKQVWQRFGEKYVDQEDRRI 183
Query: 774 NLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDEDSGRNRFN 595
+WDSGKTH+Y CHV +G+ FKGPYL+ + HLQ+VLGDDNVL+VKF E+ RF+
Sbjct: 184 YHDWDSGKTHIYRCHVSPEGSFRFKGPYLEKPKKHLQKVLGDDNVLMVKFAEEEA-ERFS 242
Query: 594 QGI-DRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTESCWS 418
G D + Y KI +EGILVGLRRY FFVFKDGG PVKC+F+R S
Sbjct: 243 IGSRDHYYAGYSKICREGILVGLRRYCFFVFKDGGKEEKKKDPTSSPVKCFFIRIHSDAC 302
Query: 417 VDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVNIERVD 238
+D++ YIL ++I EAR +FMHAHTVSS+S YM R SLILS ++ L I+LSSVNI+ ++
Sbjct: 303 IDQNVSYILSGRTISEARKLFMHAHTVSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIE 362
Query: 237 DIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQEILNGPN 58
D C DE GN +Y DG+P+I+TDGTGFISEDLAL CP N+ K + + +++ + N
Sbjct: 363 DEYCQDESGNPIY-RDGKPLIYTDGTGFISEDLALLCPKNLEKWKRINDNNIEIMHNQDG 421
Query: 57 ILNN 46
+ N
Sbjct: 422 HVEN 425
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 337 bits (863), Expect = 1e-89
Identities = 193/423 (45%), Positives = 260/423 (61%), Gaps = 9/423 (2%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVRNISALIIHMAR-LA 1129
VEA L + R QS+ P + A L ++GE A+ +L I++ ++R+ SA II+M + +
Sbjct: 28 VEAKLGQICRYQSVQPASMRAREMLASIGESSAMNLLNWISTQKIRDFSAFIIYMVKNMN 87
Query: 1128 EPP---ATQHSACFSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVSEQM 958
PP ++ C P++ P+++ D+ ++
Sbjct: 88 RPPDVLSSTDDVCECAPNL-EPSSLMNDFRCNTYGSNEFQFRK----------------- 129
Query: 957 VALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CISELD 784
ALGELEFRKAFLIL+YIG+ ++ D +S++KI + + M FE EVW +G S+ D
Sbjct: 130 -ALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYEVWRTVGERYASQTD 188
Query: 783 RRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDE---DS 613
RR NL+WDSGK Y CHVD G +FKGP+L+ T+THL+RVLGDD VL VKF E D
Sbjct: 189 RR-NLDWDSGKAENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGDDKVLTVKFAEEMVDE 247
Query: 612 GRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRT 433
R FN + R +I+ +I K+GILVGLRRY FFVFKDGG VKCYFV
Sbjct: 248 RRGEFN--LSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKCYFVCM 305
Query: 432 ESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVN 253
+S D PYIL K+I EARS+FM HTV +L+KYMAR SLILSK+I L+++L SVN
Sbjct: 306 KSDAESDMHTPYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVN 365
Query: 252 IERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQEI 73
IER++D PC+D IVY+++G+ +IHTDGTGFISEDL K NIFK R L + ++
Sbjct: 366 IERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQKKVETC 425
Query: 72 LNG 64
LNG
Sbjct: 426 LNG 428
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 324 bits (831), Expect = 5e-86
Identities = 171/313 (54%), Positives = 217/313 (69%), Gaps = 8/313 (2%)
Frame = -2
Query: 987 RQAG---AVSEQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREV 817
RQ G S+ +VALGELEFRKAFLILSY+G L++ +SVD+I + +PM FE ++
Sbjct: 5 RQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKI 64
Query: 816 WSQIGC----ISELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGD 649
W GC I E DR K L+WDSGKTH+YHCHVD DG+ FKGPYL R LQR LGD
Sbjct: 65 WEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGD 124
Query: 648 DNVLLVKFDE-DSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXX 472
DN+L+VKF E R+ ++ +D S Y+K+ EGI VGLR YRFFVFKDGG
Sbjct: 125 DNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKD 184
Query: 471 XXXXPVKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILS 292
PVKC+FVR ES S+D ++ IL K+I +ARS+FMH +SSLS YMAR SLILS
Sbjct: 185 PTTSPVKCFFVRMESVASID-NQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILS 243
Query: 291 KSIPLDINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIF 112
K++ L+++LS V+I+ + D PC D+DGN+VY DG+P+IHTDGTGFIS DLALKCP N F
Sbjct: 244 KTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQF 303
Query: 111 KGRVLMPRDMQEI 73
KG L +++ +
Sbjct: 304 KGTCLRASNIERL 316
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 324 bits (831), Expect = 5e-86
Identities = 171/313 (54%), Positives = 217/313 (69%), Gaps = 8/313 (2%)
Frame = -2
Query: 987 RQAG---AVSEQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREV 817
RQ G S+ +VALGELEFRKAFLILSY+G L++ +SVD+I + +PM FE ++
Sbjct: 27 RQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKI 86
Query: 816 WSQIGC----ISELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGD 649
W GC I E DR K L+WDSGKTH+YHCHVD DG+ FKGPYL R LQR LGD
Sbjct: 87 WEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGD 146
Query: 648 DNVLLVKFDE-DSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXX 472
DN+L+VKF E R+ ++ +D S Y+K+ EGI VGLR YRFFVFKDGG
Sbjct: 147 DNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKD 206
Query: 471 XXXXPVKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILS 292
PVKC+FVR ES S+D ++ IL K+I +ARS+FMH +SSLS YMAR SLILS
Sbjct: 207 PTTSPVKCFFVRMESVASID-NQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILS 265
Query: 291 KSIPLDINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIF 112
K++ L+++LS V+I+ + D PC D+DGN+VY DG+P+IHTDGTGFIS DLALKCP N F
Sbjct: 266 KTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQF 325
Query: 111 KGRVLMPRDMQEI 73
KG L +++ +
Sbjct: 326 KGTCLRASNIERL 338
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 322 bits (825), Expect = 3e-85
Identities = 189/418 (45%), Positives = 252/418 (60%), Gaps = 5/418 (1%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR-NISALIIHMARLA 1129
VEAL+ + R+Q+ PP D L GE+ +LRIL IA+ R+R + + + HM
Sbjct: 17 VEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRLSFAGFVNHMLDDI 76
Query: 1128 EPPATQHSACFSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVSEQMVAL 949
++ + + + N+S + E R S + AL
Sbjct: 77 NHQNNNNNNNNNNNN--------NNNNNSHSQPEPSTRQQTSPTRPPRPTP--SSLLHAL 126
Query: 948 GELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CI-SELDRR 778
GELEFRKAFLILSYIGR L++ I+ KI L+ +PM FE+ +W G CI + DR+
Sbjct: 127 GELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCIYDQSDRQ 186
Query: 777 KNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDEDSGRNRF 598
+ +W+SG+THVY C V DG FKGP LQ TRTHLQ+ LGDDNVLLVKF ED F
Sbjct: 187 LHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNF 246
Query: 597 NQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTESCWS 418
+ N++Y K GKEGI VGLR YRFFVFKDGG VKCYFVR +S S
Sbjct: 247 RTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGCS 306
Query: 417 VDEDRPYILDKKSIFEARSIFMHAH-TVSSLSKYMARLSLILSKSIPLDINLSSVNIERV 241
DE YIL K++ EAR++FMHAH + +L+KYMAR SLILSK++ L+I+L++V+++++
Sbjct: 307 ADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKI 366
Query: 240 DDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQEILN 67
D C D +GNI+ + + +P I TDGTGFIS DLAL CP N++KG L +QEI N
Sbjct: 367 PDEYCKDANGNIMVDNE-KPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINN 423
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 315 bits (806), Expect = 4e-83
Identities = 170/334 (50%), Positives = 222/334 (66%), Gaps = 9/334 (2%)
Frame = -2
Query: 987 RQAGA---VSEQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREV 817
RQ G+ S+ +VALGELEFRKAFLIL+Y+G L++ +S D+I + +PM+ FE ++
Sbjct: 5 RQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKI 64
Query: 816 WSQIGC----ISELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGD 649
W GC I E DR K L+WDSGK H+YHCHVD DG+ FKGPYL R LQR LGD
Sbjct: 65 WDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGD 124
Query: 648 DNVLLVKFDE-DSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXX 472
DN+L+VKF+E R + +D + Y+K+ +EGI VGLR YRFFVFKDGG
Sbjct: 125 DNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKD 184
Query: 471 XXXXPVKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILS 292
PVKC+FV ES SVD ++ IL K+I +ARS+FMH +SSLS YMAR SLILS
Sbjct: 185 PTTSPVKCFFVCMESVASVD-NQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILS 243
Query: 291 KSIPLDINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIF 112
K++ L+++LS V+I+ + D PC D+DGN VY DG+P+IHTDGTGFIS DLALKCP N
Sbjct: 244 KTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQV 303
Query: 111 KGRVLMPRDMQEI-LNGPNILNNPSSSRQCKPLI 13
KG L +++ + ++ + NP PL+
Sbjct: 304 KGTCLQASNIERLRVHNEVMEQNPECLHGDPPLL 337
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 314 bits (805), Expect = 5e-83
Identities = 177/423 (41%), Positives = 247/423 (58%), Gaps = 10/423 (2%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRV-RNISALIIHMARLA 1129
VE L+ +R +QS PP D R L LGE AL+IL I++ + R+++A ++M
Sbjct: 12 VENLINQIREQQSQPPLDSSIRRNLAELGEQKALQILYYISTQPIKRSLNAFTVYMINQH 71
Query: 1128 EPPATQHSACFS-----GPSVTSPAAVQEDY-NHSSLRHEXXXXXXXXXXXXLRQAGAVS 967
P + S S + P ++Q +H R S
Sbjct: 72 RSPPSPSRPSSSQSQSQSQSQSRPYSLQSQLLSHLQSRPSPLPLRSQSLPSSSTAPPPHS 131
Query: 966 EQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG---CI 796
+ + ALGELEFRK+FL++SY GR +++ ++ + + L+ + M FE+E+W +G
Sbjct: 132 DVLTALGELEFRKSFLLMSYAGRENIENVVTAEYVRSLKELTMKNFEKEIWETVGQKYIE 191
Query: 795 SELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDED 616
DR L+WDSG+TH+Y C V +G+ FKGP LQ TRTHLQ+ LGDDNVLLVKF ED
Sbjct: 192 RPTDRLVYLDWDSGRTHIYQCFVSPNGSLRFKGPILQHTRTHLQKSLGDDNVLLVKFAED 251
Query: 615 SGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVR 436
+ + Y+K GKEG+ VGLR YRFFVFK GG VKCYFVR
Sbjct: 252 QYARKSETSAQKAAKHYEKFGKEGLRVGLRLYRFFVFKVGGKEEKKKDPTTSSVKCYFVR 311
Query: 435 TESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSV 256
TES S DE YIL +++FE+RS+FMHAH + ++ KYMAR SLILSK+ L+++ ++V
Sbjct: 312 TESSCSTDERESYILSNRTMFESRSLFMHAHMLPNIDKYMARFSLILSKTYKLNVDWTTV 371
Query: 255 NIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQE 76
+++ + D+ C DE GN VY+ + + I TDGTGFISEDLA+ CP N+ KG L ++E
Sbjct: 372 SVKTIPDVCCQDEHGNTVYHNE-KRCILTDGTGFISEDLAVLCPNNVLKGSNLKNTHIKE 430
Query: 75 ILN 67
I N
Sbjct: 431 ISN 433
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 306 bits (783), Expect = 2e-80
Identities = 186/447 (41%), Positives = 243/447 (54%), Gaps = 36/447 (8%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVRNISALIIHMARL-- 1132
VE L H+ + P PD +RAL ++GE AL L I+ VRN+S I+H+ R
Sbjct: 64 VEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFILHLVRKDS 123
Query: 1131 ----------AEPPATQHSAC----FSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXX 994
P + S+C PS S + Q S +
Sbjct: 124 CASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLGTAENASLQ 183
Query: 993 XL--RQAGAVSE---------QMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRG 847
++G+ S Q VALGELEFRK L L+
Sbjct: 184 PPTPEKSGSFSSSVLDRARISQFVALGELEFRKITL---------------------LKK 222
Query: 846 MPMDLFEREVWSQIGC-ISELDRRKNL--------EWDSGKTHVYHCHVDLDGACTFKGP 694
P L+ +V +G + + ++L +WD KTH+YHCHV LDG+C FKGP
Sbjct: 223 RPWLLYGNQVERWLGWELVSVTHSESLPSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGP 282
Query: 693 YLQPTRTHLQRVLGDDNVLLVKFDEDSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRF 514
+L T+THLQRVLGDDNVL+VKF ED + Y KI ++GIL+GLRRY F
Sbjct: 283 FLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHF 342
Query: 513 FVFKDGGXXXXXXXXXXXPVKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVS 334
FVFKDGG VKCYFVR ES +D+ PY L +++FEARS+FMHAH VS
Sbjct: 343 FVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVS 402
Query: 333 SLSKYMARLSLILSKSIPLDINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGF 154
S++ YMAR SLILSK+I L I+LS+VN++R+ DIPC D GN++Y DG+P+IHTDGTGF
Sbjct: 403 SIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY-RDGKPLIHTDGTGF 461
Query: 153 ISEDLALKCPGNIFKGRVLMPRDMQEI 73
ISEDLAL+CP N+FKG+ D++ I
Sbjct: 462 ISEDLALECPMNVFKGQAKHDADLKAI 488
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 295 bits (755), Expect = 3e-77
Identities = 180/445 (40%), Positives = 250/445 (56%), Gaps = 32/445 (7%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR-NISALIIHMARLA 1129
VE +L + EQ P R L ++GE +L IL I+S ++ ++SA ++++ +
Sbjct: 24 VETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKIISSRPIKKSLSAFLVYL--ID 81
Query: 1128 EPPATQHSACFSGPSVTSPAAVQ---------EDYNHSSLRHEXXXXXXXXXXXXLRQAG 976
P S+ F+ P S + + + + S + E RQ
Sbjct: 82 RYPDCLSSSPFNSPLKRSSSPLLFPSPEGKRVQGESPSKSKLEMGFLACASPQKVARQLS 141
Query: 975 A--------------VSEQMVALGELEFRKAFLILSYIGRNKLQDAIS---VDKILKLRG 847
VS+Q++ L ELEFRK FL+LSYIG KL+D +S D I++ +
Sbjct: 142 FREEPESNCRRTSPNVSQQLMILNELEFRKLFLVLSYIGCKKLEDIVSPQIADDIVRKKN 201
Query: 846 MPMDLFEREVWSQIG--CISELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRT 673
+ M FE E+W+ G +E DR K ++W+ KTH+Y+CH+ +G CTFKGPYL RT
Sbjct: 202 LSMTDFESEIWNAFGKAYYAESDRSKYVDWNCRKTHIYYCHIKQNGQCTFKGPYLNTART 261
Query: 672 HLQRVLGDDNVLLVKFDEDSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGG 493
HLQR LGDDNVLLVKF ED+ S + I +EGILVGLRRYRFFV+KD
Sbjct: 262 HLQRALGDDNVLLVKFVEDT-------------SCANMIVEEGILVGLRRYRFFVYKDDK 308
Query: 492 XXXXXXXXXXXP---VKCYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSK 322
+KCYFVR ES + ++ Y+ K I +AR FMH H VS+++K
Sbjct: 309 EKKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYVFSTKRISQARCQFMHVHMVSNMAK 368
Query: 321 YMARLSLILSKSIPLDINLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISED 142
Y ARLSLILSK+I L +NL+SV IER++DI C DE+G I+ +EDGEP IHTDGTGFISED
Sbjct: 369 YAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIHTDGTGFISED 428
Query: 141 LALKCPGNIFKGRVLMPRDMQEILN 67
LA+ CP + K + + + ++
Sbjct: 429 LAMHCPKDFVKAEYIKDENYENFVD 453
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 295 bits (755), Expect = 3e-77
Identities = 173/420 (41%), Positives = 244/420 (58%), Gaps = 10/420 (2%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR---NISALIIHMAR 1135
+E L ++ R+ +L P + + L ++ E++A +++D+ S +V N+ + I+
Sbjct: 23 IEIALVNIYRQHNLTPINDETRQRLCSIPENLAFELVSDVLSLQVGVIYNLDSFIVSKVN 82
Query: 1134 LAEPPATQHSACFSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGAVS---- 967
A T SG S P + + L + Q V
Sbjct: 83 QAVS-VTGSQRLSSGGSSAQPRSPSGRHVCRVLDQDEMSVDSDAPSSKSLQREDVGGTLH 141
Query: 966 -EQMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CI 796
Q+VALGELEF+KAFL+LSYI +L + ++ ++I + + +PM +E VW +G
Sbjct: 142 IPQLVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKDLPMVAYEAAVWDSLGRKFC 201
Query: 795 SELDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDED 616
+ D R L+WDSGKTH Y CHV DG+ TFKGP L+ T THL +VLGD+NVL VKF +
Sbjct: 202 PQTDERV-LQWDSGKTHYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDENVLTVKF-AN 259
Query: 615 SGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVR 436
+N D + Y I K GI+VGLRRY+FFVFKDGG KCYF+R
Sbjct: 260 VQKNSSTYCSDSYFT-YKGIAKNGIMVGLRRYKFFVFKDGGKDDKNKDVSTKRAKCYFIR 318
Query: 435 TESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSV 256
T+S S+D ++PYI KSI EAR FMH HT+ SL+ YMAR SLILSK+ L+++L+ V
Sbjct: 319 TDSTASIDMEKPYIFSGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTGV 378
Query: 255 NIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQE 76
N E + DIPC D+DG V +++ +P IH+DGTG+ISEDLA CP NI+KG+ L ++E
Sbjct: 379 NFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIYKGKCLRSDKIKE 438
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 289 bits (740), Expect = 2e-75
Identities = 152/301 (50%), Positives = 199/301 (66%), Gaps = 2/301 (0%)
Frame = -2
Query: 963 QMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIG--CISE 790
Q+VALGELEF+KAFL+LSYI +L + D+I + +PM +E VW ++G +
Sbjct: 140 QLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEAAVWDRLGRRYCPQ 199
Query: 789 LDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDEDSG 610
DRR L+WDSGKTH Y CHV DG+ TFKGP L+ T THL +VLGD+NVL VKF D
Sbjct: 200 TDRRM-LQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKF-ADVP 257
Query: 609 RNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTE 430
+N DR + Y +I K GI++GLRRY+FFVFKDGG VKCYF+RT+
Sbjct: 258 KNSSTYSNDRYFT-YKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTD 316
Query: 429 SCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVNI 250
S S D + PYI KSI EAR FMH H +L+ YMAR SLILSK+ L+++++ +
Sbjct: 317 STASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITF 376
Query: 249 ERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQEIL 70
+ +DDI C D+DG V +++ +P IH+DGTG+ISEDLA CP NIFKG+ L ++QE
Sbjct: 377 DPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQEAC 436
Query: 69 N 67
N
Sbjct: 437 N 437
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 289 bits (739), Expect = 2e-75
Identities = 152/297 (51%), Positives = 201/297 (67%), Gaps = 3/297 (1%)
Frame = -2
Query: 960 MVALGELEFRKAFLILSYIGRNKL-QDAISVDKILKLRGMPMDLFEREVWSQIG--CISE 790
++ALGELEF+KAFL+LSYIG L ++ IS D+I K + +PM +E VW+++G S
Sbjct: 140 LLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSP 199
Query: 789 LDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDEDSG 610
+RR+ LE DSG TH Y CHV DG+ FKG L+ T THL +VLGDDNVL VKFD+ G
Sbjct: 200 KERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVLG 259
Query: 609 RNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTE 430
+ + L S Y I K GI+VGLRRYRFFVFKDGG VKCYF+RT+
Sbjct: 260 VETY---CNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTD 316
Query: 429 SCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVNI 250
S S+D PYI KS+ EAR FMH +T+SSL YM+R SLILSK+ L+++++ +
Sbjct: 317 STASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITF 376
Query: 249 ERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQ 79
E++DDI C D+D V +++G+P IH+DGTG+ISEDLA CP NIFKG+ + ++Q
Sbjct: 377 EQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQ 433
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 288 bits (738), Expect = 3e-75
Identities = 158/330 (47%), Positives = 215/330 (65%), Gaps = 6/330 (1%)
Frame = -2
Query: 972 VSEQMVALGELEFRKAFLILSYIGRNKLQDAI---SVDKILKLRGMPMDLFEREVWSQIG 802
+SEQ++AL +LEFRK FLIL+YIGR K++D I V IL + PM FE +W++ G
Sbjct: 240 ISEQLLALSKLEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYG 299
Query: 801 CISELDRR-KNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKF 625
+ E ++R + L+WDSG+TH+YHCHV DG+ TFKGPYL+ RTHLQ+ LGD+NVL+VKF
Sbjct: 300 HLCEHNKRVQYLDWDSGRTHLYHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKF 359
Query: 624 DEDSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXP--VK 451
++++ ++I + GILVGLRRYRFFV+KD G VK
Sbjct: 360 EQNTP------------GCPEEIVQNGILVGLRRYRFFVYKDDGKKRSSKDKEEKIDSVK 407
Query: 450 CYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDI 271
CYFVR ES + E YIL K + EAR FMH H VSS++KYMAR SL LS ++ L +
Sbjct: 408 CYFVRMESL-NPYEKETYILRDKMVHEARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQV 466
Query: 270 NLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMP 91
+L+SVNI+R++DI C D+ G I+Y+EDG+P+IHTDGTG+ISEDLA KCP + F +
Sbjct: 467 DLNSVNIDRIEDICCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHRC- 525
Query: 90 RDMQEILNGPNILNNPSSSRQCKPLIDVPP 1
+++ NG + N S + + PP
Sbjct: 526 ANLERYTNGVKLGENSSELGEAEFQSGEPP 555
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 288 bits (736), Expect = 5e-75
Identities = 152/293 (51%), Positives = 203/293 (69%), Gaps = 6/293 (2%)
Frame = -2
Query: 972 VSEQMVALGELEFRKAFLILSYIGRNKLQDAIS---VDKILKLRGMPMDLFEREVWSQIG 802
+SEQ++AL +LEFRK FLIL+YIGR K++D I+ V IL + PM FE +W++ G
Sbjct: 184 ISEQLLALNKLEFRKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYIWNKYG 243
Query: 801 CISELDRR-KNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKF 625
+ E ++R + L+WDSG+TH+YHCHV D + TFKGPYL+ RTHLQ LGD+NVL+VKF
Sbjct: 244 HLCEHNKRVQYLDWDSGRTHLYHCHVHSDRSYTFKGPYLKAERTHLQHSLGDENVLIVKF 303
Query: 624 DEDSGRNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXP--VK 451
++++ ++I + GILVGLRRYRFFV+KD G VK
Sbjct: 304 EQNTP------------GCPEEIVQNGILVGLRRYRFFVYKDDGKKRRLKDKEEKIDSVK 351
Query: 450 CYFVRTESCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDI 271
CYFVR ES + E+ YIL K + EAR FMH H VSS++KYMAR SLILS ++ L +
Sbjct: 352 CYFVRMESL-NPYENETYILHDKMVHEARCNFMHVHMVSSMAKYMARFSLILSTTVKLQV 410
Query: 270 NLSSVNIERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIF 112
+L+SVNI+R++DI C D+ G I+Y+EDG+P+IHTDGTG+ISEDLA KCP + F
Sbjct: 411 DLNSVNIDRIEDIYCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFF 463
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 287 bits (734), Expect = 9e-75
Identities = 165/418 (39%), Positives = 237/418 (56%), Gaps = 8/418 (1%)
Frame = -2
Query: 1305 VEALLAHVRREQSLPPPDLPAVRALGALGEDVALRILTDIASCRVR-NISALIIHMARLA 1129
+E LL + + P + + + L ++ ED+A +L + V N+ I+ A
Sbjct: 27 LERLLDRIYSQHKCSPINDESRQRLSSIPEDLAFELLRKAFNSPVMYNLDGFIVSKFNQA 86
Query: 1128 EPPATQHSACFSGPSVTSPAAVQEDYNHSSLRHEXXXXXXXXXXXXLRQAGA-----VSE 964
G SP + + + E LR+ +
Sbjct: 87 VSVTGSPRLSSGGSPAKSPPSSSRKHGSRVHQEEMSLDFEAPSPESLRRGDIGGSPHIPP 146
Query: 963 QMVALGELEFRKAFLILSYIGRNKLQDAISVDKILKLRGMPMDLFEREVWSQIGCI--SE 790
Q++AL ELEF+KAFL+LSY L + +S D+I + + +PM +E VW ++ + S+
Sbjct: 147 QILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMVAYEAAVWDRLSRLELSQ 206
Query: 789 LDRRKNLEWDSGKTHVYHCHVDLDGACTFKGPYLQPTRTHLQRVLGDDNVLLVKFDEDSG 610
R +LEWDS KTH Y CHV DG+ TFKGP L+PT THL +VLGD+NVL VKF D
Sbjct: 207 TVERVSLEWDSEKTHYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGDENVLTVKF-ADVQ 265
Query: 609 RNRFNQGIDRLNSIYDKIGKEGILVGLRRYRFFVFKDGGXXXXXXXXXXXPVKCYFVRTE 430
+N DR S Y +I K GI+VGLRRY+FFVFKD G VKCYF+RT+
Sbjct: 266 KNSSTYSNDRY-SAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKKKDFSTNGVKCYFIRTD 324
Query: 429 SCWSVDEDRPYILDKKSIFEARSIFMHAHTVSSLSKYMARLSLILSKSIPLDINLSSVNI 250
S + D + YI K+I EAR FMH HT+ SL+KYMAR SLILSK+ L+++++ +
Sbjct: 325 STAANDMGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILSKTKKLEVDMTGITY 384
Query: 249 ERVDDIPCMDEDGNIVYNEDGEPMIHTDGTGFISEDLALKCPGNIFKGRVLMPRDMQE 76
+ + +I C D++ N+V +++ EP +H+DGTG+ISEDLA CP NIFKG+ L +++QE
Sbjct: 385 QEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIFKGKCLSKKNIQE 442