BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00006760
         (676 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     200   4e-49
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              194   2e-47
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   183   1e-46
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   183   1e-46
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              191   2e-46
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   182   2e-46
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                182   2e-46
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               182   2e-46
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              190   4e-46
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              189   5e-46
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   183   7e-46
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]           178   9e-46
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             188   1e-45
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  188   1e-45
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     179   2e-45
gb|AFB73912.1| polyprotein [Citrus sinensis]                          187   3e-45
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   179   7e-45
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   178   7e-45
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     177   7e-45
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   179   1e-44

>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  200 bits (508), Expect = 4e-49
 Identities = 94/170 (55%), Positives = 125/170 (73%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VWI  +K+K +VF  FK ++ EV N TGR+IK LRSDNG EY+  +F++ CKD GI+RH
Sbjct: 485 KVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRH 544

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           FT   +P+QNGVAERMNRTL+E+ RSM  +AGL +E WAEA +  CYL+NRSPS A++ K
Sbjct: 545 FTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFK 604

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAYH*G 161
             +EVW G   DY +L++ GC AYA IP  +R KLEPKS +C+F+ +  G
Sbjct: 605 CAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKG 654


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  194 bits (494), Expect = 2e-47
 Identities = 89/167 (53%), Positives = 117/167 (70%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            ++W+  +K K DVF  FK F+ ++E  TG++IK LR+DNG EY   EF+ FCK  GI R 
Sbjct: 513  RLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQ 572

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            FT  +TP+QNGVAERMNRTL+ER R+ML  AG+ +  WAEA+   CY++NRSPS A+D K
Sbjct: 573  FTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLK 632

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP E+W G   DY  L + GC  Y +  S +R KL+PKS+KCIF+ Y
Sbjct: 633  TPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGY 679


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  183 bits (464), Expect(2) = 1e-46
 Identities = 88/167 (52%), Positives = 116/167 (69%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            +VW   LK K   F  FK ++T VE  T R++K+LR+DNG E+ S  F  +CK  GI RH
Sbjct: 731  KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRH 790

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            +T  +TP+QNGVAERMNRT++ + R +LSNAGL ++ WAEA+S  CYL+NRSPS A+D K
Sbjct: 791  YTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKK 850

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP EVW G   +Y DL++ GC AYA +      KLEP++ KCIF+ Y
Sbjct: 851  TPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGY 894



 Score = 30.4 bits (67), Expect(2) = 1e-46
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKIITNPWNRNLSR*KNESCLFHKEGS 46
           GVKGY+LW P T+K++    +RN+    +ES + H + S
Sbjct: 897 GVKGYKLWCPETKKVVI---SRNVV--FHESVMLHDKPS 930


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  183 bits (464), Expect(2) = 1e-46
 Identities = 88/167 (52%), Positives = 116/167 (69%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            +VW   LK K   F  FK ++T VE  T R++K+LR+DNG E+ S  F  +CK  GI RH
Sbjct: 524  KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRH 583

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            +T  +TP+QNGVAERMNRT++ + R +LSNAGL ++ WAEA+S  CYL+NRSPS A+D K
Sbjct: 584  YTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKK 643

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP EVW G   +Y DL++ GC AYA +      KLEP++ KCIF+ Y
Sbjct: 644  TPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGY 687



 Score = 30.4 bits (67), Expect(2) = 1e-46
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKIITNPWNRNLSR*KNESCLFHKEGS 46
           GVKGY+LW P T+K++    +RN+    +ES + H + S
Sbjct: 690 GVKGYKLWCPETKKVVI---SRNVV--FHESVMLHDKPS 723


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  191 bits (485), Expect = 2e-46
 Identities = 88/167 (52%), Positives = 116/167 (69%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            ++W+  +K K DVF  FK F+ ++E  T ++IK LR+DNG EY   EF+ FCK  GI R 
Sbjct: 513  RLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQ 572

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            FT  +TP+QNGVAERMNRTL+ER R+ML  AG+ +  WAEA+   CY++NRSPS A+D K
Sbjct: 573  FTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLK 632

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP E+W G   DY  L + GC  Y +  S +R KL+PKS+KCIF+ Y
Sbjct: 633  TPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGY 679


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  182 bits (462), Expect(2) = 2e-46
 Identities = 87/167 (52%), Positives = 117/167 (70%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VW   LK K   F  FK ++T VE  T R++K+LR+DNG ++ S  F  +CK  GI RH
Sbjct: 485 KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRH 544

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           +T  +TP+QNGVAERMNRT++ + R MLSNAGL ++ WAEA+S  CYL+NRSPS A+D K
Sbjct: 545 YTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKK 604

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
           TP +VW G   +Y DL++ GC AYA +     +KLEP++ KCIF+ Y
Sbjct: 605 TPIKVWSGSPANYSDLRVFGCIAYAHV---DNSKLEPRAIKCIFLGY 648



 Score = 30.4 bits (67), Expect(2) = 2e-46
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKIITNPWNRNLSR*KNESCLFHKEGS 46
           GVKGY+LW P T+K++    +RN+    +ES + H + S
Sbjct: 651 GVKGYKLWCPETKKVVI---SRNVV--FHESVMLHDKPS 684


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  182 bits (463), Expect(2) = 2e-46
 Identities = 88/167 (52%), Positives = 115/167 (68%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            +VW   LK K   F  FK ++T VE  T R++K+LR+DNG E+ S  F  +CK  GI RH
Sbjct: 509  KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRH 568

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            +T  +TP+QNGVAERMNRT++ + R MLSNAGL ++ WAEA+S  CYL+NRSP  A+D K
Sbjct: 569  YTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKK 628

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP +VW G   +Y DLK+ GC AYA +      KLEP++ KCIF+ Y
Sbjct: 629  TPIKVWSGSPANYSDLKVFGCTAYAHV---DNGKLEPRTIKCIFLGY 672



 Score = 30.0 bits (66), Expect(2) = 2e-46
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKII 115
           GVKGY+LW P T+K++
Sbjct: 675 GVKGYKLWCPETKKVV 690


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  182 bits (463), Expect(2) = 2e-46
 Identities = 88/167 (52%), Positives = 115/167 (68%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VW   LK K   F  FK ++T VE  T R++K+LR+DNG E+ S  F  +CK  GI RH
Sbjct: 341 KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRH 400

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           +T  +TP+QNGVAERMNRT++ + R MLSNAGL ++ WAEA+S  CYL+NRSP  A+D K
Sbjct: 401 YTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKK 460

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
           TP +VW G   +Y DLK+ GC AYA +      KLEP++ KCIF+ Y
Sbjct: 461 TPIKVWSGSPANYSDLKVFGCTAYAHV---DNGKLEPRTIKCIFLGY 504



 Score = 30.0 bits (66), Expect(2) = 2e-46
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKII 115
           GVKGY+LW P T+K++
Sbjct: 507 GVKGYKLWCPETKKVV 522


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  190 bits (482), Expect = 4e-46
 Identities = 87/167 (52%), Positives = 115/167 (68%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            ++W+  +K K DVF  FK F+ ++E  TG++IK LR+DNG EY   EF+ FCK  GI R 
Sbjct: 513  RLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQ 572

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            FT  +TP+QNGVAERMNRTL+ER R+ML  A + +  WAEA+   CY++NRSPS  +D K
Sbjct: 573  FTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLK 632

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP E+W G   DY  L + GC  Y +  S +R KL+PKS+KCIF+ Y
Sbjct: 633  TPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGY 679


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  189 bits (481), Expect = 5e-46
 Identities = 87/167 (52%), Positives = 115/167 (68%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            ++W+  +K K DVF  FK F+ ++E  T ++IK LR+DNG EY   EF+ FCK  GI R 
Sbjct: 513  RLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQ 572

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            FT  +TP+QNGVAERMNRTL+ER R+ML  AG+ +  WAEA    CY++NRSPS A+D K
Sbjct: 573  FTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLK 632

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP E+W G   DY  L + GC  Y +  S ++ KL+PKS+KCIF+ Y
Sbjct: 633  TPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGY 679


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  183 bits (465), Expect(2) = 7e-46
 Identities = 87/167 (52%), Positives = 116/167 (69%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VW   LK K + F+ FK ++T VE  T R++K+LR+DNG E+ S +F  +C+  GI RH
Sbjct: 463 KVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRH 522

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           +T  +TP+QNGV ERMNRT++ + R MLSNAGL +  WAEA S  CYL+NRSPS A+D K
Sbjct: 523 YTVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKK 582

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
           TP E+W G   +Y DLK+ GC AYA +      KLEP++ KCIF+ Y
Sbjct: 583 TPIEMWSGSPANYSDLKVFGCTAYAHV---DNGKLEPRAIKCIFLGY 626



 Score = 27.3 bits (59), Expect(2) = 7e-46
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKII 115
           GVK Y+LW P T+K++
Sbjct: 629 GVKAYKLWCPETQKVV 644


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score =  178 bits (451), Expect(2) = 9e-46
 Identities = 87/167 (52%), Positives = 112/167 (67%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VW   LK K   F  FK ++T VE  T R++K+LR DNG E+ S  F  +CK  GI RH
Sbjct: 345 KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRH 404

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           +T  +TP+QNGVAERMNRT++ + R MLSNAGL ++ WAEA+S  CYL+NRSPS A+D K
Sbjct: 405 YTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKK 464

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
           TP EVW      Y DL++  C AYA +      KLEP++ KCIF+ Y
Sbjct: 465 TPIEVWSSSPAKYSDLRVFSCTAYAHV---DNGKLEPRAIKCIFLGY 508



 Score = 32.3 bits (72), Expect(2) = 9e-46
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKIITNPWNRNLSR*KNESCLFHKEGS 46
           GVKGY+LW P T+K++    NRN+    +ES + H + S
Sbjct: 511 GVKGYKLWCPETKKVVI---NRNVV--FHESVMLHDKPS 544


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  188 bits (478), Expect = 1e-45
 Identities = 90/165 (54%), Positives = 115/165 (69%)
 Frame = -1

Query: 664 WIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRHFT 485
           W+  +K K DVF  FK F+  VE  +G++IK  R+DNG EY S EF +FCK  GI R FT
Sbjct: 505 WVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFT 564

Query: 484 NVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGKTP 305
             YTP+QNGVAERMNRTL+ER R+ML  AGLE+  WAEA++  CYLVNR+PS A++ KTP
Sbjct: 565 VAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTP 624

Query: 304 KEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            E+W G   DY +L I G   YA+  + +  KL+PKS+KC F+ Y
Sbjct: 625 MEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGY 669


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  188 bits (477), Expect = 1e-45
 Identities = 86/167 (51%), Positives = 115/167 (68%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            ++W+  +K K  V+  FK F+ +VE  TG+RIK LR+DNG EY   +F+ FCK  GI+R 
Sbjct: 513  RLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQ 572

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
            FT  +TP+QNGVAERMNRTL+ER R+ML  AGL +  WAEA    CY++NRSPS A+  K
Sbjct: 573  FTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLK 632

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP E+W G   DY  L++ GC  Y +  S +R KL+PKS++C F+ Y
Sbjct: 633  TPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGY 679


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  179 bits (454), Expect(2) = 2e-45
 Identities = 88/167 (52%), Positives = 113/167 (67%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VW   LK K   F  FK ++T VE  T R++K+LR+DNG E  S  F  +CK  GI RH
Sbjct: 433 KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRH 492

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           +T  +TP+QNGVAERMNRT++ + R MLSNA L ++ WAEA+S  CYL+NRSPS A+D K
Sbjct: 493 YTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKK 552

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
           TP EVW G   +Y DL++ GC AYA +      KLEP+  KCIF+ Y
Sbjct: 553 TPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRVIKCIFLGY 596



 Score = 30.4 bits (67), Expect(2) = 2e-45
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKIITNPWNRNLSR*KNESCLFHKEGS 46
           GVKGY+LW P T+K++    +RN+    +ES + H + S
Sbjct: 599 GVKGYKLWCPETKKVVI---SRNVV--FHESIMLHDKPS 632


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  187 bits (474), Expect = 3e-45
 Identities = 89/165 (53%), Positives = 110/165 (66%)
 Frame = -1

Query: 664  WIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRHFT 485
            W+  +K K DVF  FK ++  VE  +G++IK LR+DNG EY  SEF+ FCK  GI R FT
Sbjct: 515  WVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFT 574

Query: 484  NVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGKTP 305
              YTP+QNGVAERMNRTL ER+R+ML  AGL    WAEA    CY+VNRSPS A+  KT 
Sbjct: 575  VAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTA 634

Query: 304  KEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
             E+W G   DY  L   GC  Y +  + +R KL+PKS+KCIF+ Y
Sbjct: 635  MEMWTGKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGY 679


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  179 bits (455), Expect(2) = 7e-45
 Identities = 86/167 (51%), Positives = 114/167 (68%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            +VW   LK K D F AFK+++  +E  T R++KLLR+DNG E+ S  F ++C+  GI RH
Sbjct: 516  KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
             T  +TP+QNGVAERMNRT++ R R MLS+A + +  WAEA S  CYL+NRSPS+ L+ K
Sbjct: 576  HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP EVW G   DY  LK+ GC AYA +      KLEP++ KC+F+ Y
Sbjct: 636  TPIEVWSGMPADYSQLKVFGCTAYAHV---DNGKLEPRAVKCLFLGY 679



 Score = 27.7 bits (60), Expect(2) = 7e-45
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 162 GVKGYRLWDPATRK 121
           GVKGY+LW+P T K
Sbjct: 682 GVKGYKLWNPETGK 695


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  178 bits (452), Expect(2) = 7e-45
 Identities = 87/165 (52%), Positives = 113/165 (68%)
 Frame = -1

Query: 664 WIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRHFT 485
           W+  +K K + F  FK ++  +EN TG++IK LR+DNG E+  SEF +FCKD GI+RH T
Sbjct: 504 WVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRT 563

Query: 484 NVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGKTP 305
              TP+QNGVAERMN+TL+ER R MLSNAGL++  WAEA+S  CYL+NR P   +  KTP
Sbjct: 564 VRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTP 623

Query: 304 KEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            E+W G   DY +LK  GC AY  +      KLEP++KK +FV Y
Sbjct: 624 MEMWSGKAADYSNLKAFGCTAYYHV---SEGKLEPRAKKGVFVGY 665



 Score = 28.9 bits (63), Expect(2) = 7e-45
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKII 115
           GVKG+R+W PA +++I
Sbjct: 668 GVKGFRIWSPAEKRVI 683


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  177 bits (448), Expect(2) = 7e-45
 Identities = 86/167 (51%), Positives = 113/167 (67%)
 Frame = -1

Query: 670 QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
           +VW   LK K   F  FK ++T VE  T R++K+LR+DNG E+ S  F  +CK  GI  H
Sbjct: 496 KVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCH 555

Query: 490 FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
           +T  +TP+QN VAERMNRT++ + R MLSNAGL ++ WAEA+S  CYL+NRSP  A+D K
Sbjct: 556 YTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKK 615

Query: 310 TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
           TP EVW G   +Y DL++ GC AYA +      KLEP++ KCIF+ Y
Sbjct: 616 TPIEVWSGSPTNYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGY 659



 Score = 30.4 bits (67), Expect(2) = 7e-45
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 162 GVKGYRLWDPATRKIITNPWNRNLSR*KNESCLFHKEGS 46
           GVKGY+LW P T+K++    +RN+    +ES + H + S
Sbjct: 662 GVKGYKLWCPETKKVVI---SRNVV--FHESVILHDKPS 695


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  179 bits (454), Expect(2) = 1e-44
 Identities = 86/167 (51%), Positives = 114/167 (68%)
 Frame = -1

Query: 670  QVWIKTLKSKGDVFVAFKHFRTEVENMTGRRIKLLRSDNGPEYKSSEFVEFCKD*GISRH 491
            +VW   LK K D F AFK+++  +E  T R++KLLR+DNG E+ S  F ++C+  GI RH
Sbjct: 516  KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575

Query: 490  FTNVYTPEQNGVAERMNRTLVERVRSMLSNAGLEQELWAEAMSMTCYLVNRSPSMALDGK 311
             T  +TP+QNGVAERMNRT++ R R MLS+A + +  WAEA S  CYL+NRSPS+ L+ K
Sbjct: 576  HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635

Query: 310  TPKEVWFGYRCDYFDLKILGCYAYALIPSCQRNKLEPKSKKCIFVAY 170
            TP EVW G   DY  LK+ GC AYA +      KLEP++ KC+F+ Y
Sbjct: 636  TPIEVWSGTPADYSQLKVFGCTAYAHV---DNGKLEPRAVKCLFLGY 679



 Score = 27.7 bits (60), Expect(2) = 1e-44
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 162 GVKGYRLWDPATRK 121
           GVKGY+LW+P T K
Sbjct: 682 GVKGYKLWNPETGK 695