BLASTX nr result
ID: Stemona21_contig00006457
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00006457
(602 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii] 104 2e-20
tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays] 104 2e-20
gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indi... 104 2e-20
gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticu... 103 3e-20
gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu] 103 4e-20
tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays] 103 4e-20
ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831... 103 4e-20
ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [B... 103 4e-20
gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japo... 103 4e-20
gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indi... 103 4e-20
gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays] 103 4e-20
ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group] g... 103 4e-20
ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [B... 103 5e-20
emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare] 100 2e-19
ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays] gi|1173... 100 3e-19
ref|XP_006481678.1| PREDICTED: 40S ribosomal protein S28-like [C... 100 4e-19
ref|XP_006429965.1| hypothetical protein CICLE_v10013157mg [Citr... 100 4e-19
gb|ACG26633.1| 40S ribosomal protein S28 [Zea mays] 100 4e-19
gb|EOY09636.1| Nucleic acid-binding, OB-fold-like protein [Theob... 100 5e-19
ref|XP_002520788.1| ribosomal protein S28, putative [Ricinus com... 100 5e-19
>gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]
Length = 107
Score = 104 bits (259), Expect = 2e-20
Identities = 53/58 (91%), Positives = 54/58 (93%)
Frame = -2
Query: 538 RSISAMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
R MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 38 RDRDGMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 95
>tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]
Length = 103
Score = 104 bits (259), Expect = 2e-20
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = -2
Query: 541 ARSISAMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
ARS S MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 34 ARSES-MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 91
>gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indica Group]
Length = 101
Score = 104 bits (259), Expect = 2e-20
Identities = 52/55 (94%), Positives = 55/55 (100%)
Frame = -2
Query: 529 SAMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
++MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 35 ASMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 89
>gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticum aestivum]
Length = 86
Score = 103 bits (258), Expect = 3e-20
Identities = 52/54 (96%), Positives = 54/54 (100%)
Frame = -2
Query: 526 AMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
+MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 21 SMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 74
>gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]
Length = 115
Score = 103 bits (257), Expect = 4e-20
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 51 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 103
>tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]
Length = 68
Score = 103 bits (257), Expect = 4e-20
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 4 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 56
>ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831577 [Brachypodium
distachyon]
Length = 554
Score = 103 bits (257), Expect = 4e-20
Identities = 51/54 (94%), Positives = 54/54 (100%)
Frame = -2
Query: 526 AMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
+MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDILT
Sbjct: 489 SMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDILT 542
>ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 115
Score = 103 bits (257), Expect = 4e-20
Identities = 51/54 (94%), Positives = 54/54 (100%)
Frame = -2
Query: 526 AMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
+MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDILT
Sbjct: 50 SMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDILT 103
>gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japonica Group]
Length = 93
Score = 103 bits (257), Expect = 4e-20
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 29 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 81
>gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indica Group]
Length = 400
Score = 103 bits (257), Expect = 4e-20
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 336 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 388
>gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 103 bits (257), Expect = 4e-20
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 53
>ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group]
gi|226492207|ref|NP_001147283.1| 40S ribosomal protein
S28 [Zea mays] gi|226528567|ref|NP_001147474.1| 40S
ribosomal protein S28 [Zea mays]
gi|226530547|ref|NP_001147106.1| 40S ribosomal protein
S28 [Zea mays] gi|297600386|ref|NP_001049079.2|
Os03g0167100 [Oryza sativa Japonica Group]
gi|242042107|ref|XP_002468448.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|514816860|ref|XP_004983165.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|514821804|ref|XP_004985578.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|582044877|pdb|3J60|CC Chain c, Localization Of The
Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|113639193|dbj|BAF26498.1| Os10g0411700 [Oryza sativa
Japonica Group] gi|194704454|gb|ACF86311.1| unknown [Zea
mays] gi|195605026|gb|ACG24343.1| 40S ribosomal protein
S28 [Zea mays] gi|195605034|gb|ACG24347.1| 40S ribosomal
protein S28 [Zea mays] gi|195607258|gb|ACG25459.1| 40S
ribosomal protein S28 [Zea mays]
gi|195609472|gb|ACG26566.1| 40S ribosomal protein S28
[Zea mays] gi|195609816|gb|ACG26738.1| 40S ribosomal
protein S28 [Zea mays] gi|195610066|gb|ACG26863.1| 40S
ribosomal protein S28 [Zea mays]
gi|195611640|gb|ACG27650.1| 40S ribosomal protein S28
[Zea mays] gi|195618106|gb|ACG30883.1| 40S ribosomal
protein S28 [Zea mays] gi|195618338|gb|ACG30999.1| 40S
ribosomal protein S28 [Zea mays]
gi|195618690|gb|ACG31175.1| 40S ribosomal protein S28
[Zea mays] gi|195619662|gb|ACG31661.1| 40S ribosomal
protein S28 [Zea mays] gi|195620148|gb|ACG31904.1| 40S
ribosomal protein S28 [Zea mays]
gi|195655603|gb|ACG47269.1| 40S ribosomal protein S28
[Zea mays] gi|195655989|gb|ACG47462.1| 40S ribosomal
protein S28 [Zea mays] gi|222612816|gb|EEE50948.1|
hypothetical protein OsJ_31495 [Oryza sativa Japonica
Group] gi|241922302|gb|EER95446.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|255674234|dbj|BAF10993.2| Os03g0167100 [Oryza sativa
Japonica Group] gi|326509929|dbj|BAJ87180.1| predicted
protein [Hordeum vulgare subsp. vulgare]
gi|326526071|dbj|BAJ93212.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|413956006|gb|AFW88655.1| 40S
ribosomal protein S28 isoform 1 [Zea mays]
gi|413956007|gb|AFW88656.1| 40S ribosomal protein S28
isoform 2 [Zea mays] gi|414865013|tpg|DAA43570.1| TPA:
40S ribosomal protein S28 [Zea mays]
gi|414866364|tpg|DAA44921.1| TPA: 40S ribosomal protein
S28 isoform 1 [Zea mays] gi|414866365|tpg|DAA44922.1|
TPA: 40S ribosomal protein S28 isoform 2 [Zea mays]
gi|414866366|tpg|DAA44923.1| TPA: 40S ribosomal protein
S28 isoform 3 [Zea mays] gi|414866367|tpg|DAA44924.1|
TPA: 40S ribosomal protein S28 isoform 4 [Zea mays]
gi|474386341|gb|EMS64988.1| 40S ribosomal protein S28
[Triticum urartu] gi|475553296|gb|EMT11959.1| 40S
ribosomal protein S28 [Aegilops tauschii]
Length = 65
Score = 103 bits (257), Expect = 4e-20
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 53
>ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 65
Score = 103 bits (256), Expect = 5e-20
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDILT
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDILT 53
>emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]
Length = 65
Score = 100 bits (250), Expect = 2e-19
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLD QNRLIMRNVKGPVREGDILT
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDHQNRLIMRNVKGPVREGDILT 53
>ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays]
gi|1173237|sp|P46302.1|RS28_MAIZE RecName: Full=40S
ribosomal protein S28 gi|557682|emb|CAA57636.1| small
subunit ribosomal protein S28 [Zea mays]
Length = 65
Score = 100 bits (249), Expect = 3e-19
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPV EGDILT
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILT 53
>ref|XP_006481678.1| PREDICTED: 40S ribosomal protein S28-like [Citrus sinensis]
Length = 65
Score = 100 bits (248), Expect = 4e-19
Identities = 50/53 (94%), Positives = 51/53 (96%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MDSQ+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 53
>ref|XP_006429965.1| hypothetical protein CICLE_v10013157mg [Citrus clementina]
gi|557532022|gb|ESR43205.1| hypothetical protein
CICLE_v10013157mg [Citrus clementina]
Length = 114
Score = 100 bits (248), Expect = 4e-19
Identities = 50/53 (94%), Positives = 51/53 (96%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MDSQ+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILT
Sbjct: 50 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 102
>gb|ACG26633.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 100 bits (248), Expect = 4e-19
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MD+QVKLAVVVKVMGRTGSRGQVTQV+VKFLDDQNRLIMRNV GPVREGDILT
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVKVKFLDDQNRLIMRNVXGPVREGDILT 53
>gb|EOY09636.1| Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
Length = 65
Score = 99.8 bits (247), Expect = 5e-19
Identities = 50/53 (94%), Positives = 51/53 (96%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MDSQ+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILT 53
>ref|XP_002520788.1| ribosomal protein S28, putative [Ricinus communis]
gi|255581574|ref|XP_002531592.1| ribosomal protein S28,
putative [Ricinus communis] gi|223528788|gb|EEF30795.1|
ribosomal protein S28, putative [Ricinus communis]
gi|223539919|gb|EEF41497.1| ribosomal protein S28,
putative [Ricinus communis] gi|313586485|gb|ADR71253.1|
40S ribosomal protein S28A [Hevea brasiliensis]
gi|313586487|gb|ADR71254.1| 40S ribosomal protein S28B
[Hevea brasiliensis]
Length = 65
Score = 99.8 bits (247), Expect = 5e-19
Identities = 49/53 (92%), Positives = 51/53 (96%)
Frame = -2
Query: 523 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILT 365
MDSQ+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGD+LT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDVLT 53