BLASTX nr result
ID: Stemona21_contig00003222
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00003222
(927 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006644871.1| PREDICTED: DNA-directed RNA polymerases II a... 325 1e-86
ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group] g... 325 1e-86
gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japo... 324 3e-86
dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgar... 322 1e-85
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr... 321 2e-85
ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, I... 321 2e-85
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun... 320 5e-85
ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea ma... 320 5e-85
ref|XP_004970292.1| PREDICTED: DNA-directed RNA polymerases I, I... 318 1e-84
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I... 318 2e-84
ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [A... 315 1e-83
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|5... 315 2e-83
gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus pe... 313 8e-83
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I... 312 1e-82
gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family pro... 311 2e-82
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a... 310 4e-82
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps... 310 4e-82
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ... 309 8e-82
ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II a... 308 1e-81
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin... 308 1e-81
>ref|XP_006644871.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Oryza brachyantha]
Length = 210
Score = 325 bits (833), Expect = 1e-86
Identities = 156/195 (80%), Positives = 179/195 (91%)
Frame = +3
Query: 102 RLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDSADQVY 281
RLVRIRRTVMQMLRDRGYLVV+ E+ M R +FL K+GE+ REDL+INK KKND +DQ+Y
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 282 VFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLEVFQEA 461
VFFPND KVG+KHIKKY+E+MK+ENV RA+LV+QQNLTPFARS LQ+ K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEA 133
Query: 462 EMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKI 641
E+L+NIKEHVL+PEHQVLT++EKKTLLERYTLKETQLPRIQ+TDPIARYYGL+RGQVVKI
Sbjct: 134 ELLINIKEHVLIPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 642 IRPSETAGRYVTYRY 686
IRPSETAGRYVTYRY
Sbjct: 194 IRPSETAGRYVTYRY 208
>ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA
polymerase II 23K chain [Oryza sativa Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa
Japonica Group] gi|215737136|dbj|BAG96065.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein
OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 325 bits (833), Expect = 1e-86
Identities = 157/195 (80%), Positives = 178/195 (91%)
Frame = +3
Query: 102 RLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDSADQVY 281
RLVRIRRTVMQMLRDRGYLVV+ E+ M R +FL KYGE+ REDL+INK KKND +DQ+Y
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIY 73
Query: 282 VFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLEVFQEA 461
VFFPND KVG+KHIKKY+E+MK+ENV RA+LV+QQNLTPFARS LQ+ K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEA 133
Query: 462 EMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKI 641
E+L+NIKEHVLVPEHQVL ++EKKTLLERYTLKETQLPRIQ+TDPIARYYGL+RGQVVKI
Sbjct: 134 ELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 642 IRPSETAGRYVTYRY 686
IRPSETAGRYVTYRY
Sbjct: 194 IRPSETAGRYVTYRY 208
>gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 324 bits (830), Expect = 3e-86
Identities = 157/195 (80%), Positives = 177/195 (90%)
Frame = +3
Query: 102 RLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDSADQVY 281
RLVRIRRTVMQMLRDRGYLVV+ E+ M R +FL KYGE+ REDL+INK KKND +DQ+Y
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIY 73
Query: 282 VFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLEVFQEA 461
VFFPND KVG+KHIKKY+E+MK+ENV RA+LV+QQNLTPFARS LQ+ K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEA 133
Query: 462 EMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKI 641
E+L+NIKEHVLVPEHQVL + EKKTLLERYTLKETQLPRIQ+TDPIARYYGL+RGQVVKI
Sbjct: 134 ELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 642 IRPSETAGRYVTYRY 686
IRPSETAGRYVTYRY
Sbjct: 194 IRPSETAGRYVTYRY 208
>dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|326511589|dbj|BAJ91939.1|
predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 322 bits (825), Expect = 1e-85
Identities = 157/200 (78%), Positives = 175/200 (87%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
D T RLVRIRRTVM MLRDRGYLVV+ E++MTR +F KYGE RED++INK KKND
Sbjct: 9 DVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDP 68
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
DQ+YVFFPND KVG+KHIKKY+E+M +E V RAILVVQQNLTPFA+S LQ+ K HLE
Sbjct: 69 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 128
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
VFQ+AEML+NIKEHVLVPEHQVL ++EKKTLL RYTLKETQLPRIQ+TDPIARYYGLKRG
Sbjct: 129 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRG 188
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 189 QVVKIIRPSETAGRYVTYRY 208
>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
gi|567918420|ref|XP_006451216.1| hypothetical protein
CICLE_v10009504mg [Citrus clementina]
gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
RNA polymerases II and IV subunit 5A-like isoform X1
[Citrus sinensis] gi|568843558|ref|XP_006475671.1|
PREDICTED: DNA-directed RNA polymerases II and IV
subunit 5A-like isoform X2 [Citrus sinensis]
gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
RNA polymerases II and IV subunit 5A-like isoform X3
[Citrus sinensis] gi|557554441|gb|ESR64455.1|
hypothetical protein CICLE_v10009504mg [Citrus
clementina] gi|557554442|gb|ESR64456.1| hypothetical
protein CICLE_v10009504mg [Citrus clementina]
Length = 206
Score = 321 bits (823), Expect = 2e-85
Identities = 160/202 (79%), Positives = 181/202 (89%)
Frame = +3
Query: 81 VGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKN 260
+ DE RL RIRRTVMQMLRDRGY V D EINM++ +F+ K+GEN+KREDLVINKA +N
Sbjct: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
Query: 261 DSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFH 440
DS+DQ+YVFFP++ KVGVK +K Y MKSENV RAILVVQQNLTPFAR+ +Q+ S KFH
Sbjct: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
Query: 441 LEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLK 620
LEVFQEAE+LVNIKEHVLVPEHQVLT++EKKTLL+RYT+KETQLPRIQVTDPIARYYGLK
Sbjct: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYGLK 182
Query: 621 RGQVVKIIRPSETAGRYVTYRY 686
RGQVVKIIRPSETAGRYVTYRY
Sbjct: 183 RGQVVKIIRPSETAGRYVTYRY 204
>ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 321 bits (823), Expect = 2e-85
Identities = 157/200 (78%), Positives = 175/200 (87%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
D RLVRIR TVM MLRDRGYLVV+ E+ MTR +F KYGE+ REDL+INK KKND
Sbjct: 9 DAGVGRLVRIRSTVMHMLRDRGYLVVEHELAMTRRDFERKYGESFHREDLLINKCKKNDP 68
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
DQ+YVFFPND KVG+KHIKKY+E+M +E V RA++VVQQNLTPFA+S LQ+ K HLE
Sbjct: 69 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPKIHLE 128
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
VFQ+AEML+NIKEHVLVPEHQVLT+DEKKTLLERYTLKETQLPRIQ+TDPIARYYGLKRG
Sbjct: 129 VFQDAEMLINIKEHVLVPEHQVLTNDEKKTLLERYTLKETQLPRIQITDPIARYYGLKRG 188
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 189 QVVKIIRPSETAGRYVTYRY 208
>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 253
Score = 320 bits (820), Expect = 5e-85
Identities = 156/202 (77%), Positives = 181/202 (89%)
Frame = +3
Query: 81 VGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKN 260
+ ++ +RL RIRRTVMQMLRDR YLV D E+NMT+ +F +KYGEN+KREDL+INK+++N
Sbjct: 3 LSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSRRN 62
Query: 261 DSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFH 440
DS DQ+YVFFP + KVGVK +K YI MKSENV RA+LVVQQNLTPFAR+ + + S KFH
Sbjct: 63 DSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTKFH 122
Query: 441 LEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLK 620
LEVFQEAE+LVNIKEHVLVPEHQVLT++EKKTLLERYT+KETQLPRIQVTDPIARYYGLK
Sbjct: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 182
Query: 621 RGQVVKIIRPSETAGRYVTYRY 686
RGQVVKIIRPSETAGRY+TYRY
Sbjct: 183 RGQVVKIIRPSETAGRYITYRY 204
>ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA
polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases
II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase
II polypeptide [Zea mays]
Length = 210
Score = 320 bits (820), Expect = 5e-85
Identities = 155/200 (77%), Positives = 177/200 (88%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
+ T RL RIRRTVMQMLRDRGYLVVD E+ +R +FL K+GE+ REDL+INK KKND
Sbjct: 9 EATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDP 68
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
+DQ+YVFFPND KVG+KHIKKY+E+M ENV RA+LV+QQNLTPFA+S L + K HLE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLE 128
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
+FQEAEML+NIKEHVLVPEHQVLT++EKKTLLERYTLKETQLPRIQ+TDPIARYYGL+RG
Sbjct: 129 IFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRG 188
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 189 QVVKIIRPSETAGRYVTYRY 208
>ref|XP_004970292.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Setaria italica]
Length = 210
Score = 318 bits (816), Expect = 1e-84
Identities = 157/203 (77%), Positives = 179/203 (88%), Gaps = 1/203 (0%)
Frame = +3
Query: 81 VGDETT-SRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKK 257
V DE T RL RIRRTVMQMLRDRGYLVV+ E+ +R +FL K+GE+ REDL+INK KK
Sbjct: 6 VTDEVTMGRLYRIRRTVMQMLRDRGYLVVEHELATSRRDFLRKFGESFHREDLLINKYKK 65
Query: 258 NDSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKF 437
ND +DQ+YVFFPND KVG+KHIKKY+E+M ENV RA+LV+QQNLTPFA+S L + K
Sbjct: 66 NDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKI 125
Query: 438 HLEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGL 617
HLE+FQEAE+L+NIKEHVLVPEHQVLT++EKKTLLERYTLKETQLPRIQ+TDPIARYYGL
Sbjct: 126 HLEIFQEAELLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGL 185
Query: 618 KRGQVVKIIRPSETAGRYVTYRY 686
KRGQVVKIIRPSETAGRYVTYRY
Sbjct: 186 KRGQVVKIIRPSETAGRYVTYRY 208
>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 isoform 2
[Vitis vinifera]
Length = 206
Score = 318 bits (815), Expect = 2e-84
Identities = 157/203 (77%), Positives = 181/203 (89%)
Frame = +3
Query: 78 AVGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKK 257
+ +E SRL RIR+TVMQML+DRGY V D EINMT+++F+ K+GEN+KREDLVINKAK+
Sbjct: 2 SASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKR 61
Query: 258 NDSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKF 437
DS+DQ+YVFFP + KVGVK +K Y MKSENV RAILVVQQNLTPFAR+ + + S KF
Sbjct: 62 TDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKF 121
Query: 438 HLEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGL 617
HLEVFQEAE+LVNIKEHVLVPEHQVLTS+EKKTLLERYT+KETQLPRIQV+DPIARY+GL
Sbjct: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGL 181
Query: 618 KRGQVVKIIRPSETAGRYVTYRY 686
KRGQVVKIIRPSETAGRY+TYRY
Sbjct: 182 KRGQVVKIIRPSETAGRYITYRY 204
>ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [Amborella trichopoda]
gi|548863022|gb|ERN20377.1| hypothetical protein
AMTR_s00068p00034280 [Amborella trichopoda]
Length = 206
Score = 315 bits (808), Expect = 1e-83
Identities = 154/200 (77%), Positives = 179/200 (89%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
D+ TS+L RIRRT+MQMLRDRGYLV D EINMT+ +F+ K+G+ VK++DLVINK +N+
Sbjct: 5 DDQTSKLFRIRRTLMQMLRDRGYLVGDFEINMTKAQFIEKFGDEVKKDDLVINKTMRNNP 64
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
++Q+YVFFP + KVGVK +K Y E MKSENV RAILV+QQNLTPFAR +Q+ S KFHLE
Sbjct: 65 SEQIYVFFPEEQKVGVKTVKTYTERMKSENVFRAILVLQQNLTPFARQCVQEISAKFHLE 124
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
+FQE+E+LVNIKEHVLVPEHQVLTS+EKKTLLERYTLKETQLPRIQ+TDPIARYYGLKRG
Sbjct: 125 IFQESELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRG 184
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 185 QVVKIIRPSETAGRYVTYRY 204
>ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|566176743|ref|XP_006381734.1| DNA-directed RNA
polymerase family protein [Populus trichocarpa]
gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 206
Score = 315 bits (806), Expect = 2e-83
Identities = 156/200 (78%), Positives = 176/200 (88%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
+E RL+RIR+TVMQML+DRGY V D EI MTR +F KYG N+KREDLVINK K+NDS
Sbjct: 5 EEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDS 64
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
+DQ+YVFFP + KVGVK +K Y MKSENV RAILVVQQNLTPFAR+ + + S KFHLE
Sbjct: 65 SDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLE 124
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
VFQEAE+LVNIKEHVLVPEHQVL+++EKKTLLERYT+KETQLPRIQ+TDPIARYYGLKRG
Sbjct: 125 VFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRG 184
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 185 QVVKIIRPSETAGRYVTYRY 204
>gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus persica]
Length = 206
Score = 313 bits (801), Expect = 8e-83
Identities = 152/200 (76%), Positives = 176/200 (88%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
+E +RL R+R+TVMQML+DR YLV D EINMTR +F KYGEN+KREDL INK K++DS
Sbjct: 5 EEEITRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTKRSDS 64
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
+DQ+YVFFP +PKVGVK +K Y MKSENV RA+LV QQNLTPFA++ + + S KFHLE
Sbjct: 65 SDQIYVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSKFHLE 124
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
VFQEAE+LVNIKEHVLVPEH VLT++EKKTLLERYT+KETQLPRIQVTDPIA+YYGLKRG
Sbjct: 125 VFQEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLPRIQVTDPIAKYYGLKRG 184
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRY+TYRY
Sbjct: 185 QVVKIIRPSETAGRYITYRY 204
>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Solanum lycopersicum]
gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
isoform 2 [Solanum lycopersicum]
Length = 206
Score = 312 bits (800), Expect = 1e-82
Identities = 150/203 (73%), Positives = 181/203 (89%)
Frame = +3
Query: 78 AVGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKK 257
A+ +E S+L R+R+T+M+ML DRGYLV D EINM++++FL KYGEN+KREDLVI KAK+
Sbjct: 2 ALSEEELSKLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVIQKAKR 61
Query: 258 NDSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKF 437
N+S+DQ+YVFFP +PKVGVK +K Y E MK E+V +AIL+VQQNLTPFAR+ + + S KF
Sbjct: 62 NNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTKF 121
Query: 438 HLEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGL 617
HLEVFQEAEMLVNIK HVL+PEHQ+L+ +EKKTLLERYT+KETQLPRIQ+TDPIARYYGL
Sbjct: 122 HLEVFQEAEMLVNIKNHVLIPEHQLLSPEEKKTLLERYTVKETQLPRIQITDPIARYYGL 181
Query: 618 KRGQVVKIIRPSETAGRYVTYRY 686
KRGQVVKIIRPSETAGRY+TYRY
Sbjct: 182 KRGQVVKIIRPSETAGRYITYRY 204
>gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 206
Score = 311 bits (797), Expect = 2e-82
Identities = 151/202 (74%), Positives = 178/202 (88%)
Frame = +3
Query: 81 VGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKN 260
+ D+ RL RIR+TVMQML+DRGY V D EI MT+ +F+ KYGEN+KREDLVINK K+N
Sbjct: 3 LSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTKRN 62
Query: 261 DSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFH 440
D++DQ+YVFFP++ KVGVK +K Y MKSENV RA+LVVQQNLTPFAR+ + + S KFH
Sbjct: 63 DNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSKFH 122
Query: 441 LEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLK 620
LEVFQE+E+LVN+KEH LVPEHQVLT++EKKTLL+RYT+KETQLPRIQV+DPIARYYGLK
Sbjct: 123 LEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYGLK 182
Query: 621 RGQVVKIIRPSETAGRYVTYRY 686
RGQVVKIIRPSETAGRYVTYRY
Sbjct: 183 RGQVVKIIRPSETAGRYVTYRY 204
>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Solanum tuberosum]
Length = 206
Score = 310 bits (795), Expect = 4e-82
Identities = 151/202 (74%), Positives = 178/202 (88%)
Frame = +3
Query: 81 VGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKN 260
+ +E SRL R+R+T+M+ML DRGYLV D EINM++ EFL KYGEN+KREDLV+ KAK+N
Sbjct: 3 LSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKYEFLQKYGENMKREDLVLQKAKRN 62
Query: 261 DSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFH 440
+S+DQ+YVFFP +PKVGVK +K Y E MK E+V +AIL+VQQNLTPFAR+ + + S KFH
Sbjct: 63 NSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISIKFH 122
Query: 441 LEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLK 620
LEVFQEAEMLVNIK HVL+P+HQ LT +EKKTLLERYT+KETQLPRIQ+TDPIARYYGLK
Sbjct: 123 LEVFQEAEMLVNIKNHVLIPKHQTLTPEEKKTLLERYTVKETQLPRIQITDPIARYYGLK 182
Query: 621 RGQVVKIIRPSETAGRYVTYRY 686
RGQVVKIIRPSETAGRYVTYRY
Sbjct: 183 RGQVVKIIRPSETAGRYVTYRY 204
>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
gi|482567281|gb|EOA31470.1| hypothetical protein
CARUB_v10014656mg [Capsella rubella]
Length = 205
Score = 310 bits (795), Expect = 4e-82
Identities = 151/200 (75%), Positives = 176/200 (88%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
+E RL RI +T+MQML+DRGY + D EI +T+ +F+ KYG+N+KREDLV KAK+ND+
Sbjct: 4 EEEIKRLYRIHKTLMQMLKDRGYFIADSEITITKQQFIRKYGDNMKREDLVTLKAKRNDN 63
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
+DQ+Y+FFP++ KVGVK +K Y MKSENV RAILVVQQNLTPFAR+ + + S KFHLE
Sbjct: 64 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLE 123
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
VFQEAEMLVNIKEHVLVPEHQVLTS+EKKTLLERYT+KETQLPRIQVTDPIARY+GLKRG
Sbjct: 124 VFQEAEMLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRG 183
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 184 QVVKIIRPSETAGRYVTYRY 203
>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
Full=DNA-directed RNA polymerases II and IV subunit 5A;
Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
II subunit E; AltName: Full=RNA polymerase I, II and III
24.3 kDa subunit; Short=AtRPB24.3
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
NRPB5 [Arabidopsis thaliana]
Length = 205
Score = 309 bits (792), Expect = 8e-82
Identities = 150/200 (75%), Positives = 177/200 (88%)
Frame = +3
Query: 87 DETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKNDS 266
+E RL RI++T+MQMLRDRGY + D E+ MT+ +F+ K+G+N+KREDLV KAK+ND+
Sbjct: 4 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63
Query: 267 ADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFHLE 446
+DQ+Y+FFP++ KVGVK +K Y MKSENV RAILVVQQNLTPFAR+ + + S KFHLE
Sbjct: 64 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLE 123
Query: 447 VFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 626
VFQEAEMLVNIKEHVLVPEHQVLT++EKKTLLERYT+KETQLPRIQVTDPIARY+GLKRG
Sbjct: 124 VFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRG 183
Query: 627 QVVKIIRPSETAGRYVTYRY 686
QVVKIIRPSETAGRYVTYRY
Sbjct: 184 QVVKIIRPSETAGRYVTYRY 203
>ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Solanum tuberosum]
Length = 206
Score = 308 bits (790), Expect = 1e-81
Identities = 148/203 (72%), Positives = 180/203 (88%)
Frame = +3
Query: 78 AVGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKK 257
A+ +E SRL R+R+T+M+ML DRGYLV D EINM++++FL KYGEN+KREDLV+ KAK+
Sbjct: 2 ALSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVLQKAKR 61
Query: 258 NDSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKF 437
N+S+DQ+YVFFP +PKVGVK +K Y E MK E+V +AIL+VQQNLTPFAR+ + + S KF
Sbjct: 62 NNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTKF 121
Query: 438 HLEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGL 617
HLEVFQEAEMLVNIK HVL+PEH +L+ +EKK+LLERYT+KETQLPRIQ+TDPIARYYGL
Sbjct: 122 HLEVFQEAEMLVNIKNHVLIPEHLLLSPEEKKSLLERYTVKETQLPRIQITDPIARYYGL 181
Query: 618 KRGQVVKIIRPSETAGRYVTYRY 686
KRGQVVKIIRPSETAGRY+TYRY
Sbjct: 182 KRGQVVKIIRPSETAGRYITYRY 204
>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 308 bits (790), Expect = 1e-81
Identities = 153/202 (75%), Positives = 176/202 (87%)
Frame = +3
Query: 81 VGDETTSRLVRIRRTVMQMLRDRGYLVVDREINMTRNEFLHKYGENVKREDLVINKAKKN 260
+ +E RL RIR+TVMQMLRDRG+LV D EINM+++EF KYGE++KREDLVINK+KK+
Sbjct: 3 LSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKD 62
Query: 261 DSADQVYVFFPNDPKVGVKHIKKYIELMKSENVPRAILVVQQNLTPFARSSLQDFSQKFH 440
+S DQ+YVFFP++PKVGVK +K Y M SENV RAILV Q NLTPFAR+ + + S KFH
Sbjct: 63 NSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSKFH 122
Query: 441 LEVFQEAEMLVNIKEHVLVPEHQVLTSDEKKTLLERYTLKETQLPRIQVTDPIARYYGLK 620
LEVFQEAE+LVNIKEH LVPEHQVLT EKKTLLERYT+KETQLPRIQVTDP+ARYYGLK
Sbjct: 123 LEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLK 182
Query: 621 RGQVVKIIRPSETAGRYVTYRY 686
RGQVVKIIRPSETAGRYVTYR+
Sbjct: 183 RGQVVKIIRPSETAGRYVTYRF 204