BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00001866
         (3531 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1252   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...  1248   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...  1238   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1238   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1237   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1236   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...  1225   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1222   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1215   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1208   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1207   0.0  
emb|CBL69150.1| RNA polymerase [Nuphar advena]                       1207   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1207   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1207   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1199   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1199   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1197   0.0  
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...  1196   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1196   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1184   0.0  

>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1252 bits (3240), Expect = 0.0
 Identities = 631/929 (67%), Positives = 744/929 (80%), Gaps = 5/929 (0%)
 Frame = +3

Query: 123  NSLHSPLNSHHPPITLSHLCSLQSPLINTLPVEFDRDTINLPWISTNGFKDQIFTEEPPW 302
            ++ HSP +S +      H   L SP  N+  +E  +D+ N   I       +IF ++PPW
Sbjct: 59   HNFHSPSHSSNSEAQC-HALPL-SPTNNS--IETLQDSSN---IQVKESIPRIFVQDPPW 111

Query: 303  LSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXXXXXXXXXXX 482
            +S            +            ER+ Y  LRRRQVK                   
Sbjct: 112  ISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIERE 171

Query: 483  XXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLLPAEKMAVIV 662
                   P+LPYVK+LFLGWFEPLR+AI  EQR QR +++KAAYA HI LLPA+KMAVIV
Sbjct: 172  MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 231

Query: 663  MHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRR----GNSTQEVD 830
            MHKMMGL+M+G EE CVRVVQAAV IG AIEQEVRI +FL+ TK   R    G+S + + 
Sbjct: 232  MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL- 290

Query: 831  NLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIELLIESA 1010
                 +E+E+LR+RVK+ ++K+K+ EVQKLVK E+ +  WGRD QAKLGSRLIELL E+A
Sbjct: 291  -----REKEILRKRVKSFIRKKKIIEVQKLVKNEE-ITPWGRDTQAKLGSRLIELLTETA 344

Query: 1011 FVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIECDPLVQKGLNSTARHMV 1187
            +VQ P +QSAD PP++RPAFRH FKTV  E G K  +++GVIECDPLV  GL+ TA+HMV
Sbjct: 345  YVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMV 404

Query: 1188 IPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQALDTLG 1367
            IP +PMLIPPK WKGYDKGG+LFLPSYVMRTHGSR+QQDA+KSVPR+QLQKVF+ALDTLG
Sbjct: 405  IPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLG 464

Query: 1368 STKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIKKAKKA 1547
            +TKWR+N+RVL V E +W+RGG + GL++REN+P+PEKP  ED  E+Q W+W+ +KAKK 
Sbjct: 465  NTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKI 524

Query: 1548 NCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGMLEF 1727
            N E H+LRCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEF
Sbjct: 525  NQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 584

Query: 1728 SEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDGKCWWI 1907
            +EGRPLGKSGLRWLKI LANLY GGV+KLSYDGRLAFV+N+L D+FDSA NP++G  WW+
Sbjct: 585  AEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWL 644

Query: 1908 NAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNL 2087
             AEDPFQCLAACINLS+A+RSSSPH VISHLPIHQDGSCNGLQHYAALGR+S+EA+AVNL
Sbjct: 645  TAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNL 704

Query: 2088 VAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVMTSVYG 2267
            VAG+KPADVYS IAARV + ++RDS KDPA  P ALLAK+L+ QVDRKLVKQTVMTSVYG
Sbjct: 705  VAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYG 764

Query: 2268 VTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWLADCAK 2447
            VTYIGAREQIKRRL EKG ITD+RLLFTA+CYAAKVT+ ALG++F AAR IM WL +CAK
Sbjct: 765  VTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAK 824

Query: 2448 VIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTAFPPNF 2627
            VIASENQPV+WTTPLGLPV+QPY   +RHLIRTSLQVLALQR G  V +++Q+TAFPPNF
Sbjct: 825  VIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNF 884

Query: 2628 VHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTPILENL 2807
            VHSLD SHMMMTA++CR+AGL FAGVHDSFWTHACDVD+MNQILRE+FVELY  PILENL
Sbjct: 885  VHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENL 944

Query: 2808 LESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            LESFQTS PT+TFPPLPDRG+FDL++VLE
Sbjct: 945  LESFQTSHPTLTFPPLPDRGNFDLREVLE 973


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1248 bits (3229), Expect = 0.0
 Identities = 624/965 (64%), Positives = 753/965 (78%), Gaps = 17/965 (1%)
 Frame = +3

Query: 51   RAKIHSLSPFCPHSPPLTHKW-------AIF------NSLHSPLNSHHPPITLSHLCSLQ 191
            +A+ ++ S     +P L HK+       ++F      +S H PLN   PP  + H+  L+
Sbjct: 12   QAQTYTCSSRWSKAPKLNHKFLFSSTSNSLFFKPSHSSSTHFPLNLKPPPEPV-HIPPLR 70

Query: 192  SPLINTL---PVEFDRDTINLPWISTNGFKDQIFTEEPPWLSPDCMPSCLPSFDQXXXXX 362
              + + +    + F         I+      +IF ++PPW++   +       +Q     
Sbjct: 71   DSIQDNIVENSMNFQIPMSEFHLITPQESAPRIFIQDPPWIASLFLKGIYKRANQELKLE 130

Query: 363  XXXXXXXERKRYNELRRRQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGW 542
                   ER+ YN LRRRQ+K                          P+LPYVK+LFLGW
Sbjct: 131  SKEI---ERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGW 187

Query: 543  FEPLRDAIKAEQRLQRGRRRKAAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVV 722
            FEPLR+AI  EQ+ Q+ ++ KAA+A HI LLPA+KMA+IVMHKMMGL+MVG ++ CV+VV
Sbjct: 188  FEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGLVMVGNQDGCVQVV 247

Query: 723  QAAVHIGDAIEQEVRICNFLQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKL 902
            QAAVHIG AIEQEVRI +FL+ TK  ++   T   D   L+KE+E+LR+RV  L+++++L
Sbjct: 248  QAAVHIGMAIEQEVRIHSFLEKTKNLQK-KKTGVADEDGLSKEKEILRKRVNGLIRRKRL 306

Query: 903  TEVQKLVKREDNMKSWGRDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLF 1082
             EVQKL+ +E+ MK WGRD QAKLGSRLIELL E+A+VQPP SQ AD PP++RPAFRH F
Sbjct: 307  NEVQKLLIKEE-MKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLADSPPDVRPAFRHRF 365

Query: 1083 KTVGNEDG-KVKKRFGVIECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFL 1259
            K V    G K+ K +GVIECDPLV  GL+ TA+HM+IP +PML+PPK WKGYDKGGHLFL
Sbjct: 366  KAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFL 425

Query: 1260 PSYVMRTHGSREQQDAIKSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGI 1439
            PSYVMRTHGSR+Q DA++++ R Q+QKVF+ALD LGSTKWRVNK+VL V E +W+RGG I
Sbjct: 426  PSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVESIWARGGNI 485

Query: 1440 AGLINRENIPIPEKPDLEDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDE 1619
            AGL+NRE++P+P+K   ED  E+Q+W+WS++KAKK N E H+ RCD ELKLSVARKMKDE
Sbjct: 486  AGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDE 545

Query: 1620 EGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGG 1799
            EGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEF+EGRPLGKSGLRWLKIHLANLY G
Sbjct: 546  EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAG 605

Query: 1800 GVQKLSYDGRLAFVENNLHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSP 1979
            GV+KLSY+GRLAFV+N++ DIFDSA NPV+G  WW+ AEDP QCLAACINLS+A+ S SP
Sbjct: 606  GVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSP 665

Query: 1980 HDVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRD 2159
            H VISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNLV GDKPADVYS IAARV + ++RD
Sbjct: 666  HTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMKRD 725

Query: 2160 SMKDPANHPTALLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDR 2339
            S KDP   P ALLA++LV+Q+DRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG ITDDR
Sbjct: 726  SNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDR 785

Query: 2340 LLFTASCYAAKVTMNALGQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYR 2519
            LLFTA+CYAAKVT+ ALG++F AAR IM WL DCAKVIASENQPVRWTTPLGLPVVQPY 
Sbjct: 786  LLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 845

Query: 2520 NCKRHLIRTSLQVLALQRYGDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFA 2699
              +RHLIRTSLQVLALQR  +SV +++Q+TAFPPNFVHSLD SHMMMTA++CR+AGL+FA
Sbjct: 846  KSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFA 905

Query: 2700 GVHDSFWTHACDVDQMNQILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDL 2879
            GVHDSFWTH CDVDQMN+ILRE+FVELY  PILE+LLESFQ S+P +TFPPLP+RGDFDL
Sbjct: 906  GVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDL 965

Query: 2880 KKVLE 2894
             +VLE
Sbjct: 966  LQVLE 970


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1238 bits (3203), Expect = 0.0
 Identities = 622/954 (65%), Positives = 750/954 (78%), Gaps = 14/954 (1%)
 Frame = +3

Query: 75   PFCPHSPPLTH--KWAIFNSLHS---PLNSHHPPITLSHLCSLQSPLINTL------PVE 221
            P  PH  PL    K  +  SL S   PLN + PP   +  C L   L +        P  
Sbjct: 26   PQKPHKKPLLFLPKPTLHPSLVSFPFPLNLNSPP-NPARFCPLHDSLHDNFVENIENPSN 84

Query: 222  FDRDTINLPWISTNGFKDQIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYN 401
            F         I +     ++F ++PPW+S   +       +Q            E+++YN
Sbjct: 85   FLLPKAQSHQILSPESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEI---EKRKYN 141

Query: 402  ELRRRQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQR 581
             LRRRQVK                          P+LPYVK LFLGWFEP+R+AI  EQ+
Sbjct: 142  LLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQK 201

Query: 582  LQRGRRRK--AAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIE 755
            +Q+G+ +K  AAYA HI LLPA+KMAVIVMHKMMGL+M  QE   V+VVQAAVHIG AIE
Sbjct: 202  VQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIE 261

Query: 756  QEVRICNFLQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKRED 935
            QEVRI NFL+ TK  +R  +T EV  LS  KE+E+L++RV +L+++R+L EVQKLVK E+
Sbjct: 262  QEVRIHNFLEKTKNYQRKKTTDEVQGLS--KEKEILKKRVNSLIRRRRLVEVQKLVKNEE 319

Query: 936  NMKSWGRDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGK-V 1112
             +K WGRDAQAKLGSRL+ELL E+A+VQPP  QS D PP+++PAFRH FKT+  + GK +
Sbjct: 320  -IKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKM 378

Query: 1113 KKRFGVIECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSR 1292
             KR+GVIECDPL+  GL+ +A+HM+IP +PML+PPK WKGYDKGG+LFLPSYVMRTHGSR
Sbjct: 379  MKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSR 438

Query: 1293 EQQDAIKSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPI 1472
            +QQDA+K V  K++QKVF+ALDTLGSTKWRVNK+VL V E +W+ GG IAGL++R +IPI
Sbjct: 439  KQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPI 498

Query: 1473 PEKPDLEDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDF 1652
            PEKP  EDS E Q+W+WS++KA K N E H+ RCD ELKLSVARKM++EEGFYYPHNLDF
Sbjct: 499  PEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDF 558

Query: 1653 RGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRL 1832
            RGRAYPMH HLNHLSSDLCRG+LEF+EGRPLG+SGL WLKIHLANL+ GGV+KLS+DGRL
Sbjct: 559  RGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRL 618

Query: 1833 AFVENNLHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQ 2012
            AFV+N+L DIFDSA NP++G  WW+ AEDPFQCLAACINLS++++SSSPH V+S+LPIHQ
Sbjct: 619  AFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQ 678

Query: 2013 DGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTA 2192
            DGSCNGLQHYAALGRDS+EAAAVNLVAG+KPADVYS IA RV + ++RDS KDPA +P A
Sbjct: 679  DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNA 738

Query: 2193 LLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAK 2372
             LAKLL+DQVDRKLVKQTVMTSVYGVT++GAREQIKRRLEEKG ITDDR+LF A+CY AK
Sbjct: 739  SLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAK 798

Query: 2373 VTMNALGQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSL 2552
            VT+ ALG++F AAR+IM WL DCAKVIASENQPV+WTTPLGLPVVQPY   +RHLIRTSL
Sbjct: 799  VTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSL 858

Query: 2553 QVLALQRYGDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHAC 2732
            QVLALQR GDSV V++Q+TAFPPNFVHSLD SHMMMTA++CR+AGL FAGVHDSFWTHAC
Sbjct: 859  QVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHAC 918

Query: 2733 DVDQMNQILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            DV++MNQILRE+FVELY  P+LENL ES QTS+P++ FPPLP+RG+FDL++VL+
Sbjct: 919  DVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLK 972


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1238 bits (3202), Expect = 0.0
 Identities = 612/946 (64%), Positives = 741/946 (78%), Gaps = 1/946 (0%)
 Frame = +3

Query: 60   IHSLSPFCPHSPPLTHKWAIFNSLHSPLNSHHPPITLSHLCSLQSPLINTLPVEFDRDTI 239
            +H L     +S  L  K ++ +S H PL+   PP  +        PL +++      +  
Sbjct: 32   LHFLFNSTSNSNSLFFKPSLSSSTHFPLSLRPPPDPIQF-----HPLNDSVQDNLVENLE 86

Query: 240  NLPWISTNGFKDQIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQ 419
            N         + +IF ++PPW++   +      F +            +R++YN LRRRQ
Sbjct: 87   NSIKFQVPISEPRIFIQDPPWIASLFLKGM---FKKVNKELKVESKEIDRRKYNLLRRRQ 143

Query: 420  VKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRR 599
            +K                          PSLPYVK+LFLGWFEPLR+AI  EQ+ Q+ ++
Sbjct: 144  IKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKK 203

Query: 600  RKAAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNF 779
             K A+A HI LLPA+KMA+IVMHK+MGL+M+G ++ CV+VVQAAVHIG AIEQEVRI +F
Sbjct: 204  HKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQDGCVQVVQAAVHIGMAIEQEVRIHSF 263

Query: 780  LQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRD 959
            L+ +K  +R   T   D   L+KE+E+LR+RV  L+++++L EVQKL+K+ED MK WGRD
Sbjct: 264  LEKSKSLQR-KKTSVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKED-MKPWGRD 321

Query: 960  AQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIE 1136
             QAKLGSRLIELL E+A VQPP  Q AD PP++RPAFRH  K      G K+ K +GVIE
Sbjct: 322  TQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIE 381

Query: 1137 CDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKS 1316
            CDPLV  GL+ TA+HM+IP +PML+PPK WKGYDKGGHLFLPSYVMRTHGSR+Q D +++
Sbjct: 382  CDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRN 441

Query: 1317 VPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLED 1496
            +  +Q+QKVF+ALD LGSTKWR+NK+VL V E +W+RGG IAGL++RE++P+PEKP  ED
Sbjct: 442  ISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSED 501

Query: 1497 SDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 1676
              E+Q+WRWS +KAKK N E H+ RCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH
Sbjct: 502  PTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMH 561

Query: 1677 SHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLH 1856
             HLNHLSSDLCRG+LEF+EGRPLGKSGLRWLKIHLANLY GGV+KLSYDGR++FV+N++ 
Sbjct: 562  PHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHID 621

Query: 1857 DIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQ 2036
            DIFDSA NPV+G  WW+ AEDP QCLAACINLS+A+ S SPH VISHLPIHQDGSCNGLQ
Sbjct: 622  DIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQ 681

Query: 2037 HYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVD 2216
            HYAALGRD++EAAAVNLVAG+KPADVYS IA RV D ++RDS KDP  +P ALLAK+LV+
Sbjct: 682  HYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVN 741

Query: 2217 QVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQ 2396
            Q+DRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG ITDDRLLFTA+CYAAKVT+ ALG+
Sbjct: 742  QIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGE 801

Query: 2397 MFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRY 2576
            +F AAR IM WL DCAKVIASENQPVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQR 
Sbjct: 802  IFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE 861

Query: 2577 GDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQI 2756
             + V V++Q+TAFPPNFVHSLD SHMMMTA++CR+AG++FAGVHDSFWTHACDVDQMNQI
Sbjct: 862  SNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQI 921

Query: 2757 LREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            LRE FVELY  PILENLLESFQ ++P +TFPPLP+RGDFDL++VL+
Sbjct: 922  LRENFVELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLK 967


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1237 bits (3200), Expect = 0.0
 Identities = 600/873 (68%), Positives = 720/873 (82%), Gaps = 1/873 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            ++F ++PPW+S          +              E+++YN LRRRQ++          
Sbjct: 8    KVFIQDPPWISAHFWKGM---YKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMA 64

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LPYVK L LGWFEPL++AI+ EQ++++ +++K+A++ +I LL
Sbjct: 65   DEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELL 124

Query: 636  PAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGNS 815
            PA+KMAVIVMHKMMGLLMVG E+ CVRVVQAAV IG AIEQEVRI NFL+ TK  +R  +
Sbjct: 125  PADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKT 184

Query: 816  TQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIEL 995
              EV   +++KE+EVLR+RV +L+++++L EVQ LVK +D  K W R  QAKLGSRLIEL
Sbjct: 185  MHEVQE-TMDKEKEVLRKRVNSLIRRKRLMEVQNLVK-QDETKPWSRGTQAKLGSRLIEL 242

Query: 996  LIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIECDPLVQKGLNST 1172
            L E+A+VQPP +QS DIPP++RPAFRH+FKT+    G K+ K++GVIECDPL+  GL+ T
Sbjct: 243  LTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGT 302

Query: 1173 ARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQA 1352
            A+HM+IP  PML+PPK WKGYDKGGHLFLPSYVMRTHGSR+QQ A++SVP KQ+QKVF+A
Sbjct: 303  AKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEA 362

Query: 1353 LDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIK 1532
            LDTLG+TKWRVN+R+L V E +W+ GG IAGL++RE+IPIPEKP  +D  E+QKW+WS++
Sbjct: 363  LDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVR 422

Query: 1533 KAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCR 1712
            KAKK N E H+ RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HL HLSSDLCR
Sbjct: 423  KAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCR 482

Query: 1713 GMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDG 1892
            G+LEF EGRPLGKSGLRWLKIHLANLY GGV+KLS+DGRLAFVEN+L +IFDSA NPV+G
Sbjct: 483  GVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNG 542

Query: 1893 KCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEA 2072
            K WW+ AEDPFQCLAACINLS+A+ S+SPH VISHLPIHQDGSCNGLQHYAALGRD++EA
Sbjct: 543  KRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEA 602

Query: 2073 AAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVM 2252
            AAVNLVA +KP+DVYS IA RV + IRRDS KDPA +P ALLAK+LVDQVDRKLVKQTVM
Sbjct: 603  AAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVM 662

Query: 2253 TSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWL 2432
            TSVYGVTY+GAREQIKRRLEEKG ITDDRLLF+A+CY AKVT+ ALG++F AAR IM WL
Sbjct: 663  TSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWL 722

Query: 2433 ADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTA 2612
             DCAK+IASE+QPV+WTTPLGLPVVQPY   +RHLI+TSLQ+LALQR G SV V++Q+TA
Sbjct: 723  GDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTA 782

Query: 2613 FPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTP 2792
            FPPNFVHSLD SHMMMTA++CR+AGL FAGVHDSFWTHA DVD MN+ILRE+FVELY  P
Sbjct: 783  FPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMP 842

Query: 2793 ILENLLESFQTSFPTVTFPPLPDRGDFDLKKVL 2891
            ILENLLE FQTS+PT+ FPPLP+RG+FDL+KVL
Sbjct: 843  ILENLLEDFQTSYPTLQFPPLPERGNFDLQKVL 875


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1236 bits (3198), Expect = 0.0
 Identities = 602/802 (75%), Positives = 701/802 (87%), Gaps = 5/802 (0%)
 Frame = +3

Query: 504  PSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLLPAEKMAVIVMHKMMGL 683
            P+LPYVK+LFLGWFEPLR+AI  EQR QR +++KAAYA HI LLPA+KMAVIVMHKMMGL
Sbjct: 8    PNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGL 67

Query: 684  LMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRR----GNSTQEVDNLSLNKE 851
            +M+G EE CVRVVQAAV IG AIEQEVRI +FL+ TK   R    G+S + +      +E
Sbjct: 68   VMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL------RE 121

Query: 852  QEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIELLIESAFVQPPPS 1031
            +E+LR+RVK+ ++K+K+ EVQKLVK E+ +  WGRD QAKLGSRLIELL E+A+VQ P +
Sbjct: 122  KEILRKRVKSFIRKKKIIEVQKLVKNEE-ITPWGRDTQAKLGSRLIELLTETAYVQTPVN 180

Query: 1032 QSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIECDPLVQKGLNSTARHMVIPCMPML 1208
            QSAD PP++RPAFRH FKTV  E G K  +++GVIECDPLV  GL+ TA+HMVIP +PML
Sbjct: 181  QSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPML 240

Query: 1209 IPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQALDTLGSTKWRVN 1388
            IPPK WKGYDKGG+LFLPSYVMRTHGSR+QQDA+KSVPR+QLQKVF+ALDTLG+TKWR+N
Sbjct: 241  IPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRIN 300

Query: 1389 KRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIKKAKKANCEMHAL 1568
            +RVL V E +W+RGG + GL++REN+P+PEKP  ED  E+Q W+W+ +KAKK N E H+L
Sbjct: 301  RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 360

Query: 1569 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLG 1748
            RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEF+EGRPLG
Sbjct: 361  RCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 420

Query: 1749 KSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDGKCWWINAEDPFQ 1928
            KSGLRWLKI LANLY GGV+KLSYDGRLAFV+N+L D+FDSA NP++G  WW+ AEDPFQ
Sbjct: 421  KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 480

Query: 1929 CLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPA 2108
            CLAACINLS+A+RSSSPH VISHLPIHQDGSCNGLQHYAALGR+S+EA+AVNLVAG+KPA
Sbjct: 481  CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPA 540

Query: 2109 DVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAR 2288
            DVYS IAARV + ++RDS KDPA  P ALLAK+L+ QVDRKLVKQTVMTSVYGVTYIGAR
Sbjct: 541  DVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAR 600

Query: 2289 EQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWLADCAKVIASENQ 2468
            EQIKRRL EKG ITD+RLLFTA+CYAAKVT+ ALG++F AAR IM WL +CAKVIASENQ
Sbjct: 601  EQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQ 660

Query: 2469 PVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTAFPPNFVHSLDSS 2648
            PV+WTTPLGLPV+QPY   +RHLIRTSLQVLALQR G  V +++Q+TAFPPNFVHSLD S
Sbjct: 661  PVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGS 720

Query: 2649 HMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTPILENLLESFQTS 2828
            HMMMTA++CR+AGL FAGVHDSFWTHACDVD+MNQILRE+FVELY  PILENLLESFQTS
Sbjct: 721  HMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTS 780

Query: 2829 FPTVTFPPLPDRGDFDLKKVLE 2894
             PT+TFPPLPDRG+FDL++VLE
Sbjct: 781  HPTLTFPPLPDRGNFDLREVLE 802


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1225 bits (3169), Expect = 0.0
 Identities = 596/841 (70%), Positives = 712/841 (84%), Gaps = 4/841 (0%)
 Frame = +3

Query: 384  ERKRYNELRRRQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDA 563
            E+++YN LRRRQVK                          P+LPYVK LFLGWFEP+R+A
Sbjct: 14   EKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREA 73

Query: 564  IKAEQRLQRGRRRK--AAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVH 737
            I  EQ++Q+G+ +K  AAYA HI LLPA+KMAVIVMHKMMGL+M  QE   V+VVQAAVH
Sbjct: 74   IAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVH 133

Query: 738  IGDAIEQEVRICNFLQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQK 917
            IG AIEQEVRI NFL+ TK  +R  +T EV  LS  KE+E+L++RV +L+++R+L EVQK
Sbjct: 134  IGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLS--KEKEILKKRVNSLIRRRRLVEVQK 191

Query: 918  LVKREDNMKSWGRDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGN 1097
            LVK E+ +K WGRDAQAKLGSRL+ELL E+A+VQPP  QS D PP+++PAFRH FKT+  
Sbjct: 192  LVKNEE-IKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISK 250

Query: 1098 EDGK-VKKRFGVIECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVM 1274
            + GK + KR+GVIECDPL+  GL+ +A+HM+IP +PML+PPK WKGYDKGG+LFLPSYVM
Sbjct: 251  DPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVM 310

Query: 1275 RTHGSREQQDAIKSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLIN 1454
            RTHGSR+QQDA+K V  K++QKVF+ALDTLGSTKWRVNK+VL V E +W+ GG IAGL++
Sbjct: 311  RTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVD 370

Query: 1455 RENIPIPEKPDLEDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYY 1634
            R +IPIPEKP  EDS E Q+W+WS++KA K N E H+ RCD ELKLSVARKM++EEGFYY
Sbjct: 371  RNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYY 430

Query: 1635 PHNLDFRGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKL 1814
            PHNLDFRGRAYPMH HLNHLSSDLCRG+LEF+EGRPLG+SGL WLKIHLANL+ GGV+KL
Sbjct: 431  PHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKL 490

Query: 1815 SYDGRLAFVENNLHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVIS 1994
            S+DGRLAFV+N+L DIFDSA NP++G  WW+ AEDPFQCLAACINLS++++SSSPH V+S
Sbjct: 491  SHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLS 550

Query: 1995 HLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDP 2174
            +LPIHQDGSCNGLQHYAALGRDS+EAAAVNLVAG+KPADVYS IA RV + ++RDS KDP
Sbjct: 551  YLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDP 610

Query: 2175 ANHPTALLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTA 2354
            A +P A LAKLL+DQVDRKLVKQTVMTSVYGVT++GAREQIKRRLEEKG ITDDR+LF A
Sbjct: 611  ATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAA 670

Query: 2355 SCYAAKVTMNALGQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRH 2534
            +CY AKVT+ ALG++F AAR+IM WL DCAKVIASENQPV+WTTPLGLPVVQPY   +RH
Sbjct: 671  ACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERH 730

Query: 2535 LIRTSLQVLALQRYGDS-VSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHD 2711
            LIRTSLQVLALQR GDS V V++Q+TAFPPNFVHSLD SHMMMTA++CR+AGL FAGVHD
Sbjct: 731  LIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHD 790

Query: 2712 SFWTHACDVDQMNQILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVL 2891
            SFWTHACDV++MNQILRE+FVELY  P+LENL ES QTS+P++ FPPLP+RG+FDL++VL
Sbjct: 791  SFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVL 850

Query: 2892 E 2894
            +
Sbjct: 851  K 851


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1222 bits (3161), Expect = 0.0
 Identities = 593/874 (67%), Positives = 720/874 (82%), Gaps = 1/874 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            +IF ++PPW S   +                     +++++N LRRRQVK          
Sbjct: 138  RIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMV 191

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LP++K LFLGWF PLR+AI+ EQ++QR +++KAAYA HI LL
Sbjct: 192  DEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIELL 251

Query: 636  PAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGNS 815
            PA+K+AVIVMHKMMGL+M G E+ CV+VVQAAVHIG AIEQE+RI +FL+ TK  +R   
Sbjct: 252  PADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 311

Query: 816  TQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIEL 995
              + + + L+KE+E+LR+RV +L+K +++ E QKL+K E+  K WGRD QAKLGSRL+EL
Sbjct: 312  IADTEEV-LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET-KPWGRDTQAKLGSRLVEL 369

Query: 996  LIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIECDPLVQKGLNST 1172
            LIE+A+VQ P + +   PP++RPAFRH FKT+    G K  KR+GV+ECDPLV  GL+ +
Sbjct: 370  LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRS 429

Query: 1173 ARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQA 1352
            A+HM+IP +PML+PPK WKGY+KGG+LFLPSYVMRTHGSR+QQ+A+KSV    ++KVF+A
Sbjct: 430  AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 489

Query: 1353 LDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIK 1532
            LDTLGSTKWRVNK+VL V E +W  GG IAGL++R ++PIPEKP  ED  E+QKW+WS++
Sbjct: 490  LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVR 549

Query: 1533 KAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCR 1712
            KAKK N E H+ RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CR
Sbjct: 550  KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 609

Query: 1713 GMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDG 1892
            G+LEF+EGRPLGKSGLRWLKIHLANL+ GGV+KLS+DGRLAFVEN+L++IFDSA NP++G
Sbjct: 610  GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 669

Query: 1893 KCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEA 2072
              WW+ AEDPFQCLAACINLS+A++SSSPH VISHLPIHQDGSCNGLQHYAALGR+++EA
Sbjct: 670  SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 729

Query: 2073 AAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVM 2252
            AAVNLVAG+KPADVYS IA RV + ++RDS KDP+ HP ALLAK+L+DQVDRKLVKQTVM
Sbjct: 730  AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 789

Query: 2253 TSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWL 2432
            TSVYGVT++GAREQIKRRLEEKG ITDDR LF A+CYAAKVT+ ALG++F AARSIM WL
Sbjct: 790  TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 849

Query: 2433 ADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTA 2612
             DCAKVIASENQPVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQR G SV +++Q+TA
Sbjct: 850  GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTA 909

Query: 2613 FPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTP 2792
            FPPNFVHSLD SHMMMTA++CR+AGL FAGVHDSFWTHACDVD+MNQILR++FVELY  P
Sbjct: 910  FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMP 969

Query: 2793 ILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            ILENLLESFQTS+PT++FPPLP+RG+FDL++VLE
Sbjct: 970  ILENLLESFQTSYPTLSFPPLPERGNFDLEEVLE 1003


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1215 bits (3143), Expect = 0.0
 Identities = 615/947 (64%), Positives = 739/947 (78%), Gaps = 4/947 (0%)
 Frame = +3

Query: 63   HSLS--PFCPHSPPLTHKWAIFNSLHSPLNSHHPPITLSHLCSLQSPLINTLPVEFDRDT 236
            HSLS       S PL  K +I N    P    HP    SH   L+   I T+      +T
Sbjct: 38   HSLSNPSLSSSSFPLNPKLSILN----PPLLFHPLHDSSHDRLLEDFEIPTINNHQKLET 93

Query: 237  -INLPWISTNGFKDQIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRR 413
             I    I       ++F  + PW+S           ++            E+++YN LRR
Sbjct: 94   LIKFDQIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDI---EKRKYNLLRR 150

Query: 414  RQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRG 593
            RQ++                          P+LPYVKSLFLGWFEPL++AI+ EQ+L++ 
Sbjct: 151  RQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKS 210

Query: 594  RRRKAAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRIC 773
            +++K+A++ +I LLPA+KMAVIVMHKMMGL+MVG E+ CVRVVQAAV IG AIEQEVRI 
Sbjct: 211  KKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIH 270

Query: 774  NFLQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWG 953
            NFL+ TK  +R  +  +V   S++KE+E+LR+RV +L+++++L EVQ LV  +D  K W 
Sbjct: 271  NFLEKTKNHQRKKTMHDVQE-SMDKEKEMLRKRVNSLIRRKRLMEVQNLVI-QDETKPWN 328

Query: 954  RDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGV 1130
            RD QAKLGSRLIELL E+A+VQPP  QS  IPP++RPAFRH+FK+V    G K  K++GV
Sbjct: 329  RDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGV 388

Query: 1131 IECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAI 1310
            IECDPL+  GL+ TA+HM+IP  PML+PPK W+GYDKGGHLFLPSY+MRTHGSR+QQDA+
Sbjct: 389  IECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAV 448

Query: 1311 KSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDL 1490
            +SVP KQ+QKVF+ALDTLG+TKWRVN +VL V E +W+ GG  AGL+NR +IPIPEK   
Sbjct: 449  RSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSS 508

Query: 1491 EDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 1670
            +D  E+QKW+WS++KAKK N E H+ RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYP
Sbjct: 509  DDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYP 568

Query: 1671 MHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENN 1850
            MH HL HLSSDLCRG+LEF+EGRPLGKSGL WLKIHLANLY GGV+KLS+DGRLAFVEN+
Sbjct: 569  MHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENH 628

Query: 1851 LHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNG 2030
            L +IFDSA NPV+GK WW+ AEDPFQCLAACINLS+A++S+SPH VISHLPIHQDGSCNG
Sbjct: 629  LSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNG 688

Query: 2031 LQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLL 2210
            LQHYAALGRDS EAAAVNLVA +KP+DVYS IA RV + IRRDS KDPA +P ALLAK+L
Sbjct: 689  LQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVL 748

Query: 2211 VDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNAL 2390
            +D+VDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG ITDDR+LF+A+CYAAKVT+ AL
Sbjct: 749  IDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTAL 808

Query: 2391 GQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQ 2570
            G++F AAR IM WL DCAKVIASE+QPVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQ
Sbjct: 809  GELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQ 868

Query: 2571 RYGDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMN 2750
            R G SV V++Q+TAFPPNFVHSLD SHMMMTA++CR+A L+FAGVHDSFWTHA D D MN
Sbjct: 869  REGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMN 928

Query: 2751 QILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVL 2891
            +ILRE+FVELY  PILENLLE FQTS+PT+ FP LP+RG+FDL++VL
Sbjct: 929  RILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVL 975


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1208 bits (3125), Expect = 0.0
 Identities = 598/898 (66%), Positives = 720/898 (80%), Gaps = 10/898 (1%)
 Frame = +3

Query: 231  DTINLPWISTNGFKDQ-----IFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKR 395
            + +NL  I  NGF ++     +F ++PPW+S   M S      Q             R+R
Sbjct: 80   ELVNLQKIP-NGFLNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRR 138

Query: 396  YNELRRRQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAE 575
            Y  LRRRQ+K                          P+LPYVK L LGWFEPLR AI+ E
Sbjct: 139  YAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKE 198

Query: 576  QRLQRGRRRKAAYAAHIGLLPAEKMAVIVMHKMMGLLMVG-QEEECVRVVQAAVHIGDAI 752
            Q  +   + +AA+A HI  LPA+KMAVIVMHK+MGLLM+G +EE CV+VVQAAV IG A+
Sbjct: 199  QNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAV 258

Query: 753  EQEVRICNFLQNTKRSRR---GNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLV 923
            E EVRI NFL+ TK+ ++   G  +QE     ++KE  +LR+RVK+L+K+ ++ EV+KL+
Sbjct: 259  ENEVRIHNFLEKTKKLQKHMTGAQSQE----DMSKETMILRKRVKSLIKRNRVVEVRKLM 314

Query: 924  KREDNMKSWGRDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNED 1103
            K E+  +SWGRD QAKLG RL+ELL E+A+VQ P  QSAD PP+IRPAFRH+FK    + 
Sbjct: 315  KSEEP-ESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDP 373

Query: 1104 GK-VKKRFGVIECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRT 1280
            GK + K++GVIECDPLV  G++ T + M+IP +PML+PPK W+GYDKGG+LFLPSY+MRT
Sbjct: 374  GKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRT 433

Query: 1281 HGSREQQDAIKSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRE 1460
            HGSR QQDA++ VP KQ+Q+V++ALDTLGSTKWRVNKR+L V E +W+ GG IAGL++R+
Sbjct: 434  HGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRK 493

Query: 1461 NIPIPEKPDLEDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPH 1640
            ++PIPE  + +D  E++KW+W ++K+KK N E+H+ RCD ELKLSVARK+KDEEGFYYPH
Sbjct: 494  DVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPH 553

Query: 1641 NLDFRGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSY 1820
            NLDFRGRAYPMH HLNHLSSDLCRG+LEF+EGRPLGKSGLRWLKIHLA+LY GGV+KL Y
Sbjct: 554  NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCY 613

Query: 1821 DGRLAFVENNLHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHL 2000
            D RLAFVEN++HDI DSA NP++G  WW+NAEDPFQCLAACINLS+A++SSSPH VISHL
Sbjct: 614  DARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHL 673

Query: 2001 PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPAN 2180
            PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAG+KPADVY+ IA RV   IR DS+KDPA 
Sbjct: 674  PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAI 733

Query: 2181 HPTALLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASC 2360
             P ALLAKLL+DQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG I DDRLLFTASC
Sbjct: 734  DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC 793

Query: 2361 YAAKVTMNALGQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLI 2540
            YAAKVT+ ALG++F AAR  M WL DCAKVIA ENQPVRWTTPLGLPVVQPY   +RH+I
Sbjct: 794  YAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVI 853

Query: 2541 RTSLQVLALQRYGDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFW 2720
            RTSLQ+LALQR GD+V V++Q+TAFPPNFVHSLD SHMMMTA++CR+AGLQFAGVHDSFW
Sbjct: 854  RTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFW 913

Query: 2721 THACDVDQMNQILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            THACDVDQMN+ILRE+FVELY  PILE+LLE+FQ S+P +TFPPLP RGDF+L++VLE
Sbjct: 914  THACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLE 971


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1207 bits (3124), Expect = 0.0
 Identities = 587/874 (67%), Positives = 717/874 (82%), Gaps = 1/874 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            +IF ++PPW S   +                     +++++N LRRRQVK          
Sbjct: 141  RIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMV 194

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LP++K LFLGWF PL +AI+ EQ++QR +++KAAYA HI LL
Sbjct: 195  DEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELL 254

Query: 636  PAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGNS 815
            PA+KMAVIVMHKMMGL+M G E+ CV+VVQAAVHIG AIEQE+RI +FL+ TK  +R   
Sbjct: 255  PADKMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 314

Query: 816  TQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIEL 995
              + + + L+KE+E+LR+RV +L+K +++ E QKL+K E+  K WGRD QAKLGSRL+EL
Sbjct: 315  IADTEEV-LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET-KPWGRDTQAKLGSRLVEL 372

Query: 996  LIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIECDPLVQKGLNST 1172
            LIE+A+VQ P + +   PP++RPAFRH FKT+    G K  KR+GV+ECDPLV +GL+ +
Sbjct: 373  LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432

Query: 1173 ARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQA 1352
            A+HM+IP +PML+PPK WKGY+KGG+LFLPSYVMRTHGSR+QQ+A+KSV    ++KVF+A
Sbjct: 433  AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492

Query: 1353 LDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIK 1532
            LDTLGSTKWRVNK+VL V E +W  GG IAGL++R ++ IPEKP  ED  E+QKW+WS++
Sbjct: 493  LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552

Query: 1533 KAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCR 1712
            KAKK N E H+ RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CR
Sbjct: 553  KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612

Query: 1713 GMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDG 1892
            G+LEF+EGRPLGKSGLRWLKIHLANL+ GGV+KLS+DGRLAFVEN+L++IFDSA NP++G
Sbjct: 613  GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672

Query: 1893 KCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEA 2072
              WW+ AEDPFQCLAACINL++A++SSSPH VISHLPIHQDGSCNGLQHYAALGR+++EA
Sbjct: 673  SRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732

Query: 2073 AAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVM 2252
            AAVNLVAG+KPADVYS IA RV + ++RDS KD + HP ALLAK+L+DQVDRKLVKQTVM
Sbjct: 733  AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVM 792

Query: 2253 TSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWL 2432
            TSVYGVT++GAREQIKRRLEEKG ITDDR LF A+CYAAKVT+ ALG++F AARSIM WL
Sbjct: 793  TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852

Query: 2433 ADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTA 2612
             DCAKVIASENQPVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQR G+ V +++Q+TA
Sbjct: 853  GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTA 912

Query: 2613 FPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTP 2792
            FPPNFVHSLD SHMMMTA++CR+AGL FAGVHDSFWTHACDVD+MNQILR++FVELY  P
Sbjct: 913  FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMP 972

Query: 2793 ILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            +LENLLESFQTS+PT++FP LP+RG+FDL++VLE
Sbjct: 973  MLENLLESFQTSYPTLSFPSLPERGNFDLEEVLE 1006


>emb|CBL69150.1| RNA polymerase [Nuphar advena]
          Length = 985

 Score = 1207 bits (3124), Expect = 0.0
 Identities = 594/875 (67%), Positives = 703/875 (80%), Gaps = 2/875 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            ++F  +PPWL         P                E  +YN LRRRQVK          
Sbjct: 115  RVFLLDPPWL---------PGGLVQERGRPARERERESSKYNLLRRRQVKMETEAWEDAA 165

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRK--AAYAAHIG 629
                            P LPYVKSLFLGWFEP RDAIK +Q LQR R++   AAYA  IG
Sbjct: 166  REYRELIKEMCEKKLAPHLPYVKSLFLGWFEPFRDAIKEDQELQRRRKKNLAAAYAPFIG 225

Query: 630  LLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRG 809
             LPA+ MAVIVMHKMM LLM GQ++ CVR+V AA HIG+AIEQEVRI NF Q  K+S R 
Sbjct: 226  HLPADMMAVIVMHKMMVLLMNGQDDGCVRLVHAACHIGEAIEQEVRIYNFFQKIKKSTRE 285

Query: 810  NSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLI 989
            N     ++ + +K QE LR+RV NLLKK+K+ +VQ LV+ +D ++ WGRD+ AKLGSR I
Sbjct: 286  NQILSENHENESKNQEALRKRVTNLLKKKKIRDVQLLVEADD-VEPWGRDSHAKLGSRXI 344

Query: 990  ELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGKVKKRFGVIECDPLVQKGLNS 1169
            +LLI++ +VQPP +Q A+ PPEIRPAFRH FKT   E     KR+G+IECDPLV+KGL++
Sbjct: 345  DLLIQTXYVQPPLNQLAZGPPEIRPAFRHTFKTXKKEXDNSVKRYGIIECDPLVRKGLDA 404

Query: 1170 TARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQ 1349
            TARH+VIP MPMLIPPK W GYDKGGHLFLPSYVMRTHG+++Q+DA+KSVP+ QL++VF+
Sbjct: 405  TARHLVIPYMPMLIPPKKWTGYDKGGHLFLPSYVMRTHGAKQQRDALKSVPKXQLKEVFE 464

Query: 1350 ALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSI 1529
            ALDTLGSTKWRVNKRVL V + LW+ G  IAGL++  +I +PEKP  ED  ++++WRWS+
Sbjct: 465  ALDTLGSTKWRVNKRVLDVIDSLWASGRPIAGLVDHSDIALPEKPCTEDEAQMRRWRWSV 524

Query: 1530 KKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLC 1709
            KK KK NCE HA RCDIELKLSVARKM+ E+GFYYPHNLDFRGRAYPMH HLNHL SDLC
Sbjct: 525  KKVKKENCERHAQRCDIELKLSVARKMRKEDGFYYPHNLDFRGRAYPMHPHLNHLGSDLC 584

Query: 1710 RGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVD 1889
            RG+LEF+EG+PLGK+GLRWLKIHLANLYGGGV KLS+DGRL FVEN+L DIFDSA  P++
Sbjct: 585  RGILEFAEGKPLGKTGLRWLKIHLANLYGGGVDKLSFDGRLTFVENHLADIFDSAERPIE 644

Query: 1890 GKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSME 2069
            G+ WW+NAEDPFQCLAACI+LS A++SSSP D ISH+P+H DGSCNGLQHYAALGRD + 
Sbjct: 645  GRQWWLNAEDPFQCLAACIDLSXALKSSSPEDAISHIPVHLDGSCNGLQHYAALGRDRLG 704

Query: 2070 AAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTV 2249
            AA+VNLV+G+KP DVYSGIAARV++ + RDS KDPA HPT+LLA++L+DQVDRKLVKQTV
Sbjct: 705  AASVNLVSGEKPXDVYSGIAARVMEIVVRDSKKDPAVHPTSLLARILIDQVDRKLVKQTV 764

Query: 2250 MTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKW 2429
            MTSVYGVTYIGAR+QIKRRL+E+  ITDD+LLF+A+CYAAKVT++AL +MF AARSIM W
Sbjct: 765  MTSVYGVTYIGARDQIKRRLKERDFITDDKLLFSAACYAAKVTLSALEEMFQAARSIMSW 824

Query: 2430 LADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKT 2609
            L DCAKVIASEN+PVRWTTPLGLPVVQPY    RHL+RTSLQVLALQR  + V VK+QKT
Sbjct: 825  LGDCAKVIASENEPVRWTTPLGLPVVQPYWKQSRHLVRTSLQVLALQRESNKVLVKRQKT 884

Query: 2610 AFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKT 2789
            AFPPNFVHSLD SHMMMTA++C+ AGL FAGVHDS+WTHACDVD M++ILR +FVELY  
Sbjct: 885  AFPPNFVHSLDGSHMMMTAVACKLAGLNFAGVHDSYWTHACDVDDMSRILRLKFVELYSM 944

Query: 2790 PILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            PILENLLESFQTSFPT+ FPPLPDRGDFDL++VLE
Sbjct: 945  PILENLLESFQTSFPTLVFPPLPDRGDFDLQEVLE 979


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1207 bits (3123), Expect = 0.0
 Identities = 595/886 (67%), Positives = 712/886 (80%), Gaps = 5/886 (0%)
 Frame = +3

Query: 252  ISTNGFKDQIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXX 431
            + T     ++F ++PPW+S   M S      Q             R+RY  LRRRQ+K  
Sbjct: 92   VLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAE 151

Query: 432  XXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAA 611
                                    P+LPYVK L LGWFEPLR AI+ EQ  +   + +AA
Sbjct: 152  TEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAA 211

Query: 612  YAAHIGLLPAEKMAVIVMHKMMGLLMVG-QEEECVRVVQAAVHIGDAIEQEVRICNFLQN 788
            +A HI  LPA+KMAVIVMHK+MGLLM+G +EE CV+VVQAAV IG A+E EVRI NFL+ 
Sbjct: 212  FAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEK 271

Query: 789  TKRSRR---GNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRD 959
            TK+ ++   G  +QE     +++E  +LR+RVK+L+K+ ++ EV+KL+K E+  +SWGRD
Sbjct: 272  TKKLQKHMTGAQSQE----DMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEP-ESWGRD 326

Query: 960  AQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGK-VKKRFGVIE 1136
             QAKLG RL+ELL E+A+VQPP  QSAD PP+IRPAFRH+F+    + GK + K++GVIE
Sbjct: 327  TQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIE 386

Query: 1137 CDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKS 1316
            CDPLV  G++ T + M+IP +PML+PPK W+GYDKGG+LFLPSY+MRTHGSR QQDA++S
Sbjct: 387  CDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRS 446

Query: 1317 VPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLED 1496
            VP KQ+Q+V++ALDTLGSTKWRVNKR+L V E +W+ GG IAGL++R+++PIPE    +D
Sbjct: 447  VPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHS-DD 505

Query: 1497 SDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 1676
              E++KW+W ++K+KK N E+H+ RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH
Sbjct: 506  IMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMH 565

Query: 1677 SHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLH 1856
             HLNHLSSDLCRG+LEF+EGRPLGKSGLRWLKIHLA+LY GG++KL YD RLAFVEN++ 
Sbjct: 566  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHID 625

Query: 1857 DIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQ 2036
            DI DSA NP++G  WW+NAEDPFQCLAACINLS+A++SSSPH V SHLPIHQDGSCNGLQ
Sbjct: 626  DILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQ 685

Query: 2037 HYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVD 2216
            HYAALGRDSMEAAAVNLVAGDKPADVY+ IA RV   IR DS+KDPA  P ALLAKLL+D
Sbjct: 686  HYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLID 745

Query: 2217 QVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQ 2396
            QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG I DDRLLFTASCYAAKVT+ ALG+
Sbjct: 746  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGE 805

Query: 2397 MFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRY 2576
            +F AAR  M WL DCAKVIASENQPVRWTTPLGLPVVQPY   +RH+IRTSLQVLALQR 
Sbjct: 806  LFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 865

Query: 2577 GDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQI 2756
            GD+V V++Q+TAFPPNFVHSLD SHMMMTA++CR+AGLQFAGVHDSFWTHACDVDQMN+I
Sbjct: 866  GDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRI 925

Query: 2757 LREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            LRE+FVELY  PILE+LLESFQ S+P +TFPPLP RGDFDL +VLE
Sbjct: 926  LREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLE 971


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1207 bits (3122), Expect = 0.0
 Identities = 607/964 (62%), Positives = 745/964 (77%), Gaps = 15/964 (1%)
 Frame = +3

Query: 48   RRAKIHSLSPFCP-HSPPLTHKWAIFNSLHSPLNSHHPPITLSHLC-----------SLQ 191
            + +K    S F P  S  L  +  +F S  S  NS    ++L  L            S Q
Sbjct: 28   KASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSSNSFPSTLSLPSLTPKLGKTSFFQPSPQ 87

Query: 192  SPLINTLPVEFDRDTINLPWISTNGFK--DQIFTEEPPWLSPDCMPSCLPSFDQXXXXXX 365
            S +I   P E   + ++  + +++  K   +IF ++PPW++   M   + S         
Sbjct: 88   SQIILDSPEEELAEKMDGHFRNSDKIKGSSRIFMQDPPWVNTLFMKGLVDS----NTGLR 143

Query: 366  XXXXXXERKRYNELRRRQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWF 545
                  ER++YN LRRRQ+K                          P+LP VK+LFLGWF
Sbjct: 144  LEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWF 203

Query: 546  EPLRDAIKAEQRLQRGRRRKAAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQ 725
            EPL+ AI+ EQ+ QR R++KA Y  HI +LPA+KMAVIVMHKMM LLMVG +  CVR+VQ
Sbjct: 204  EPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMVGNDAGCVRLVQ 263

Query: 726  AAVHIGDAIEQEVRICNFLQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLT 905
            AA+ IG AIEQE++I +FL+ TK  R+  S    D L   KE+E+ R RVK+L+K+++L 
Sbjct: 264  AALQIGTAIEQEIKIHSFLEKTKNIRKNASDLPEDLL---KEKEIQRNRVKSLIKRKRLF 320

Query: 906  EVQKLVKREDNMKSWGRDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFK 1085
            E  KLV  ED+ KSW +D QAKLGSRLIELLI++A++Q P SQSAD PP++RPAFRH FK
Sbjct: 321  EAAKLVTSEDS-KSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFK 379

Query: 1086 TVGNEDGK-VKKRFGVIECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLP 1262
             + NE G+ V KR+GVIECDPLV KG++ +AR+M+IP +PMLIPPK+WKGYDKGG+LFLP
Sbjct: 380  ILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLP 439

Query: 1263 SYVMRTHGSREQQDAIKSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIA 1442
            SYVMRTHGSR+QQDA++  P +Q+QKVF+AL+TLG TKWR+N++VLGV E LW+ GG I 
Sbjct: 440  SYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIG 499

Query: 1443 GLINRENIPIPEKPDLEDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEE 1622
            GL+N +++P+PEKP  ED  E+  W+WS++KAKK N E HALRCD+ELK+SVA+KMKDEE
Sbjct: 500  GLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEE 559

Query: 1623 GFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGG 1802
            GFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEF+ GRPLGK+GL WLKIHLAN+Y GG
Sbjct: 560  GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGG 619

Query: 1803 VQKLSYDGRLAFVENNLHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPH 1982
            V KLSY+ R AFVEN+L ++FDSA NP++G  WW++AEDPFQCLAACI+L+ A+ SSSPH
Sbjct: 620  VDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPH 679

Query: 1983 DVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDS 2162
              IS+LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++PADVYS IA RV + + +DS
Sbjct: 680  SFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEEPADVYSEIAVRVREIMEKDS 739

Query: 2163 MKDPANHPTALLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRL 2342
             KDP   P A+LAK+LVDQVDRKLVKQTVMTSVYGVT++GAREQIKRRLEEKG ITDDRL
Sbjct: 740  RKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGVITDDRL 799

Query: 2343 LFTASCYAAKVTMNALGQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRN 2522
            LF+A+CY+AKVTM+ALGQ+F AAR IM WL DCAKVIASENQPVRWTTPLGLPVVQPY  
Sbjct: 800  LFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 859

Query: 2523 CKRHLIRTSLQVLALQRYGDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAG 2702
             KRHLI+TSLQVLALQ+ G+ + VK+Q+TAFPPN+VHSLD +HMMMTA++CR+AGLQFAG
Sbjct: 860  SKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACRDAGLQFAG 919

Query: 2703 VHDSFWTHACDVDQMNQILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLK 2882
            VHDSFWTHACDV++MNQILR +FVELY  PILENLLESFQT++P  TFPPLP+RGDFDL+
Sbjct: 920  VHDSFWTHACDVEKMNQILRVKFVELYNMPILENLLESFQTAYPASTFPPLPERGDFDLE 979

Query: 2883 KVLE 2894
            +VLE
Sbjct: 980  EVLE 983


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1199 bits (3102), Expect = 0.0
 Identities = 586/875 (66%), Positives = 706/875 (80%), Gaps = 2/875 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            ++F ++PPW+S   M S      Q             R+RY  LRRRQ+K          
Sbjct: 138  RVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 197

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LPYVK L LGWFEPLR AI+ EQ  +  ++ + AYA HI  L
Sbjct: 198  EEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSL 257

Query: 636  PAEKMAVIVMHKMMGLLMVG-QEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGN 812
            PA+KMAVIVMHK+MGLLM+G +EE CV+VVQAAV IG A+E EVRI NF++ TK+ ++  
Sbjct: 258  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHM 317

Query: 813  STQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIE 992
            S  +     +++E  +LR+RVK+L+K+ ++ EV+KL++ E+  +SWGRD QAKLG RL+E
Sbjct: 318  SGAQGQE-DMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEP-ESWGRDTQAKLGCRLLE 375

Query: 993  LLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGK-VKKRFGVIECDPLVQKGLNS 1169
            LL E+A+VQPP  QSAD PP+IRPAFRH+F+    + GK + K++GVIECDPLV  G++ 
Sbjct: 376  LLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDR 435

Query: 1170 TARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQ 1349
            T + M+IP +PML+PPK W+GYDKGG+LFLPSY+MRTHGSR QQDA++SVP KQ+Q+V++
Sbjct: 436  TVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYE 495

Query: 1350 ALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSI 1529
            ALDTLGSTKWRVNKR+L V E +W+ GG IAGL++R+++PIPE    +D  EL++W+W +
Sbjct: 496  ALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHS-DDIMELKRWKWRV 554

Query: 1530 KKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLC 1709
            +KAKK N E+H+ RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLC
Sbjct: 555  RKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 614

Query: 1710 RGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVD 1889
            RG+LEF+EGRPLGKSGLRWLK+HLA+LY GG++KL YD R+AFVEN++ DI DSA NP++
Sbjct: 615  RGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLN 674

Query: 1890 GKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSME 2069
            G  WW+NAEDP QCLAACINLS+A++S SPH VISHLPIHQDGSCNGLQHYAALGRDSME
Sbjct: 675  GNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSME 734

Query: 2070 AAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTV 2249
            AAAVNLVAG+KPADVY+ IA RV   IR DS KDPA  P ALLAKLL+DQVDRKLVKQTV
Sbjct: 735  AAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTV 794

Query: 2250 MTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKW 2429
            MTSVYGVTY+GAREQIKRRLEEKG I DDRLLFTASCYAAKVT+ ALG++F AAR  M W
Sbjct: 795  MTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTW 854

Query: 2430 LADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKT 2609
            L DCAKVIASENQPVRWTTPLGLPVVQPY   +RH+IRTSLQVLALQR GD+V V++Q+T
Sbjct: 855  LGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRT 914

Query: 2610 AFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKT 2789
            AFPPNFVHSLD SHMMMTA++CR+AGL FAGVHDSFWTHACDVDQMN+ILRE+FVELY  
Sbjct: 915  AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSM 974

Query: 2790 PILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            PILE+LLESFQ S+P +TFPPLP RGDFDL++VLE
Sbjct: 975  PILEDLLESFQESYPALTFPPLPKRGDFDLQEVLE 1009


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1199 bits (3101), Expect = 0.0
 Identities = 590/874 (67%), Positives = 713/874 (81%), Gaps = 1/874 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            +IF ++PPW++   +        +            E+++YN LRRRQ+K          
Sbjct: 103  RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEI---EKRKYNLLRRRQIKAETEAWEKMV 159

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LPYVK LFLGWFEPL++AI+ EQ+ QR +++KAA+A HI LL
Sbjct: 160  EEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELL 219

Query: 636  PAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGNS 815
             A+KMAVIVM+KMMGLLM+  ++ CV+VVQAAV IG AIEQEVRI + L+  + ++R  +
Sbjct: 220  SADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQR--T 277

Query: 816  TQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIEL 995
                D   L KE+EVLR++V  L+++RKL EVQKL+K+E+  K+WGRD QAKLGSRLIEL
Sbjct: 278  KVRADTECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEE-FKAWGRDTQAKLGSRLIEL 336

Query: 996  LIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGK-VKKRFGVIECDPLVQKGLNST 1172
            LIESAF+QPP SQSAD PP+IRPAF H FK V    G+   K++GV+ECDP+V  GL+ T
Sbjct: 337  LIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRT 396

Query: 1173 ARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQA 1352
            A+HM+IP +PML+PPK WKGYDKGGH FLPSYVMRTHGS  QQDA+K++  KQ+QKVF+A
Sbjct: 397  AKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEA 456

Query: 1353 LDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIK 1532
            LD LGSTKWRVN+ VL V E LW++GG  AGL++R+++PIPEKP L D  E+Q+WRWS+K
Sbjct: 457  LDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKP-LGDLTEMQEWRWSMK 515

Query: 1533 KAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCR 1712
            KAKK N E+H+ RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCR
Sbjct: 516  KAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 575

Query: 1713 GMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDG 1892
            G+LEF+EGRPLGKSGL WLKIHLANLY GGV+KLSYD RLAFV+++L +IFDSA+NPV+G
Sbjct: 576  GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNG 635

Query: 1893 KCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEA 2072
              WW+ AEDPFQCLAAC+NLS+A++SS+PH VIS+LPIHQDGSCNGLQHYAALGRD++EA
Sbjct: 636  DRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEA 695

Query: 2073 AAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVM 2252
            AAVNLVAG+KPADVYS IAARV   + RD+ KDP  +P A LAKLL+DQVDRKLVKQTVM
Sbjct: 696  AAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVM 755

Query: 2253 TSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWL 2432
            TSVYGVTYIGAREQIKRRLEEKG I+DDRL F ASCYAAKVT++ALG++F AAR IM WL
Sbjct: 756  TSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWL 815

Query: 2433 ADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTA 2612
             DCAKVIA +NQPVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQR G+ V V++Q+TA
Sbjct: 816  GDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTA 875

Query: 2613 FPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTP 2792
            FPPNFVHSLD SHMM+TA++CR+AGL+FAGVHDSFWTHACDVD+MN ILRE+FVELY  P
Sbjct: 876  FPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMP 935

Query: 2793 ILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            +LE+LLE F+T++P +TFP LP RGDFDL++VL+
Sbjct: 936  VLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLK 969


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1197 bits (3096), Expect = 0.0
 Identities = 584/875 (66%), Positives = 706/875 (80%), Gaps = 2/875 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            ++F ++PPW+S   M +      Q             R+RY  LRRRQ+K          
Sbjct: 130  RVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 189

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LPYVK L LGWFEPLR AI+ EQ  +  ++ + AYA HI  L
Sbjct: 190  EEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSL 249

Query: 636  PAEKMAVIVMHKMMGLLMVG-QEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGN 812
            PA+KMAVIVMHK+MGLLM+G +EE CV+VVQAAV IG A+E EVRI NF++ TK+ ++ +
Sbjct: 250  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQK-H 308

Query: 813  STQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIE 992
             T       +++E  +LR+RVK+L+K+ ++ EV+KL++ E+  +SWGRD QAKLG RL+E
Sbjct: 309  MTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEP-ESWGRDTQAKLGCRLLE 367

Query: 993  LLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGK-VKKRFGVIECDPLVQKGLNS 1169
            LL E+A+VQPP  QSAD PP+IRPAFRH+F+    + GK + K++GVIECDPLV  G++ 
Sbjct: 368  LLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDR 427

Query: 1170 TARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQ 1349
            T + M+IP +PML+PPK W+GYDKGG+LFLPSY+MRTHGSR QQDA++SVP KQ+Q+V++
Sbjct: 428  TVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYE 487

Query: 1350 ALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSI 1529
            ALDTLGSTKWRVNKR+L V E +W+ GG IAGL++R+++PIPE    +D  EL++W+W +
Sbjct: 488  ALDTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPELHS-DDIMELKRWKWRV 546

Query: 1530 KKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLC 1709
            +KAKK N E+H+ RCD ELKLSVARK++DEEGFYYPHNLDFRGRAYPMH HLNHLSSDLC
Sbjct: 547  RKAKKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 606

Query: 1710 RGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVD 1889
            RG+LEF+EGRPLGKSGLRWLK+HLA+LY GG++KL YD R+AFVEN++ DI DSA NP++
Sbjct: 607  RGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLN 666

Query: 1890 GKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSME 2069
            G  WW+NAEDP QCLAACINLS+A++S SPH VISHLPIHQDGSCNGLQHYAALGRDSME
Sbjct: 667  GNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSME 726

Query: 2070 AAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTV 2249
            AAAVNLVAG+KPADVY+ IA RV   IR DS KDPA  P ALLAKLL+DQVDRKLVKQTV
Sbjct: 727  AAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTV 786

Query: 2250 MTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKW 2429
            MTSVYGVTY+GAREQIKRRLEEKG I DDRLLFTASCYAAKVT+ ALG++F AAR  M W
Sbjct: 787  MTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTW 846

Query: 2430 LADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKT 2609
            L DCAKVIASENQPVRWTTPLGLPVVQPY   +RH+IRTSLQVLALQR GD+V V++Q+T
Sbjct: 847  LGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRT 906

Query: 2610 AFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKT 2789
            AFPPNFVHSLD SHMMMTA++CR+AGL FAGVHDSFWTHACDVDQMN+ILRE+FVELY  
Sbjct: 907  AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSM 966

Query: 2790 PILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            PILE+LLESFQ S+P +TFPPLP RGDFDL++VLE
Sbjct: 967  PILEDLLESFQESYPALTFPPLPKRGDFDLREVLE 1001


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score = 1196 bits (3095), Expect = 0.0
 Identities = 596/907 (65%), Positives = 716/907 (78%), Gaps = 4/907 (0%)
 Frame = +3

Query: 186  LQSPLINTLPVEFDRDTINLPWISTNGFKDQIFTEEPPWLSPDCMPSCLPSF-DQXXXXX 362
            ++ P++ TL    D DT+N+PWI++   +         W S     S + +  D+     
Sbjct: 78   IEDPIL-TLDSTID-DTVNVPWIASQISEILPIQTPQAWSSFYASDSHIKNITDEAIDGE 135

Query: 363  XXXXXXXE--RKRYNELRRRQVKXXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFL 536
                   E  + ++N LRRRQVK                          P+LPY+KSLFL
Sbjct: 136  LKKKGSREMSKTKFNGLRRRQVKIETEAWERAVREYRELISEMCEQKLAPNLPYMKSLFL 195

Query: 537  GWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVR 716
            GWFEPLRDAI  EQ LQ  +R K  YA +IGLL A+KMAVIVMHK+MGL+M GQ+   VR
Sbjct: 196  GWFEPLRDAIAEEQALQETKRAKTGYAPYIGLLTADKMAVIVMHKLMGLMMTGQDCGSVR 255

Query: 717  VVQAAVHIGDAIEQEVRICNFLQNTKR-SRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKK 893
            VVQAA  IG+A+E E RI +FL+ TK+ SRRG    E ++ SL+KEQE LR+RV NL+K 
Sbjct: 256  VVQAACQIGEAVEHEARIHDFLEKTKKKSRRGKKVGE-ESESLSKEQENLRKRVTNLMKM 314

Query: 894  RKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFR 1073
            +KL EV+KLV++ D++K WG+DA AKLGSRLIEL I++A++QPP  Q A+ PPEIRPAFR
Sbjct: 315  QKLREVRKLVRQGDDVKPWGQDAHAKLGSRLIELFIKTAYIQPPVDQQAEGPPEIRPAFR 374

Query: 1074 HLFKTVGNEDGKVKKRFGVIECDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHL 1253
            H F+T   +  K  +R+GVIECDPLV KGL+ TARHMV    PMLI PK W+GYDKGG+L
Sbjct: 375  HTFRTFTKDRQKFCRRYGVIECDPLVHKGLDKTARHMVTAYTPMLIRPKPWRGYDKGGYL 434

Query: 1254 FLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGG 1433
             LPS +MR HG+++Q++A+K+VP+KQLQ VF+ALDTLGSTKWRVNKR+L V   +W+RGG
Sbjct: 435  VLPSQIMRIHGAKQQREAVKNVPQKQLQNVFEALDTLGSTKWRVNKRILDVVNRVWARGG 494

Query: 1434 GIAGLINRENIPIPEKPDLEDSDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMK 1613
            GIAGL++RE++ +PEKPD ED  E++KWRWS+KKAKK N E H+ RCD+ELKLSVARKM+
Sbjct: 495  GIAGLVDREDVLLPEKPDTEDEMEIRKWRWSVKKAKKVNSERHSQRCDLELKLSVARKMR 554

Query: 1614 DEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLY 1793
            +EEGFYYPHNLDFRGRAYPMH HLNHL SDLCRG+LEF+EGRPLGKSGLRW KIHLANLY
Sbjct: 555  EEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWSKIHLANLY 614

Query: 1794 GGGVQKLSYDGRLAFVENNLHDIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSS 1973
              GV KLSYDGRLAFVEN+L DIFDSA  P++GK WW+NAEDPFQCLAAC+NL +A++S 
Sbjct: 615  ACGVDKLSYDGRLAFVENHLDDIFDSAERPLEGKRWWLNAEDPFQCLAACMNLFEALKSP 674

Query: 1974 SPHDVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIR 2153
            +P +VISH+P+HQDGSCNGLQHYAALGRD + AAAVNLVAG+KPADVYSGIAARVL+ ++
Sbjct: 675  TPENVISHMPVHQDGSCNGLQHYAALGRDRLGAAAVNLVAGEKPADVYSGIAARVLEIMK 734

Query: 2154 RDSMKDPANHPTALLAKLLVDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITD 2333
            RDS K PA++P A LA+ LVDQVDRKLVKQTVMTSVYGVTYIGAR+QI RRL+E+G ITD
Sbjct: 735  RDSEKGPASNPNAFLARALVDQVDRKLVKQTVMTSVYGVTYIGARDQICRRLKERGHITD 794

Query: 2334 DRLLFTASCYAAKVTMNALGQMFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQP 2513
            D  LF ASCYAAKVT+ ALG+ F AAR+IM WL DCAKVIASEN+PVRWTTPLGLPVVQP
Sbjct: 795  DSQLFRASCYAAKVTLTALGETFQAARNIMSWLGDCAKVIASENEPVRWTTPLGLPVVQP 854

Query: 2514 YRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQ 2693
            YR   RHL++TSLQVLALQR  +SV VK+Q+TAF PNFVHSLD SHMMMTAI+C+  GL 
Sbjct: 855  YRKFARHLVKTSLQVLALQRESNSVMVKRQRTAFAPNFVHSLDGSHMMMTAIACKKIGLN 914

Query: 2694 FAGVHDSFWTHACDVDQMNQILREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDF 2873
            FAGVHDS+WTHACDVD+MN ILRE+FVELY  PILENLLE FQTSFPT+ FP +P+RGDF
Sbjct: 915  FAGVHDSYWTHACDVDEMNWILREKFVELYSMPILENLLEGFQTSFPTLVFPAVPERGDF 974

Query: 2874 DLKKVLE 2894
            DL+ VLE
Sbjct: 975  DLRDVLE 981


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1196 bits (3094), Expect = 0.0
 Identities = 589/874 (67%), Positives = 712/874 (81%), Gaps = 1/874 (0%)
 Frame = +3

Query: 276  QIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVKXXXXXXXXXX 455
            +IF ++PPW++   +        +            E+++YN LRRRQ+K          
Sbjct: 103  RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEI---EKRKYNLLRRRQIKAETEAWEKMV 159

Query: 456  XXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRKAAYAAHIGLL 635
                            P+LPYVK LFLGWFEPL++AI+ EQ+ QR +++KAA+A HI LL
Sbjct: 160  EEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELL 219

Query: 636  PAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNFLQNTKRSRRGNS 815
             A+KMA IVM+KMMGLLM+  ++ CV+VVQAAV IG AIEQEVRI + L+  + ++R  +
Sbjct: 220  SADKMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQR--T 277

Query: 816  TQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRDAQAKLGSRLIEL 995
                D   L KE+EVLR++V  L+++RKL EVQKL+K+E+  K+WGRD QAKLGSRLIEL
Sbjct: 278  KVRADTECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEE-FKAWGRDTQAKLGSRLIEL 336

Query: 996  LIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDGK-VKKRFGVIECDPLVQKGLNST 1172
            LIESAF+QPP SQSAD PP+IRPAF H FK V    G+   K++GV+ECDP+V  GL+ T
Sbjct: 337  LIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRT 396

Query: 1173 ARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKSVPRKQLQKVFQA 1352
            A+HM+IP +PML+PPK WKGYDKGGH FLPSYVMRTHGS  QQDA+K++  KQ+QKVF+A
Sbjct: 397  AKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEA 456

Query: 1353 LDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLEDSDELQKWRWSIK 1532
            LD LGSTKWRVN+ VL V E LW++GG  AGL++R+++PIPEKP L D  E+Q+WRWS+K
Sbjct: 457  LDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKP-LGDLTEMQEWRWSMK 515

Query: 1533 KAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCR 1712
            KAKK N E+H+ RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCR
Sbjct: 516  KAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 575

Query: 1713 GMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLHDIFDSAANPVDG 1892
            G+LEF+EGRPLGKSGL WLKIHLANLY GGV+KLSYD RLAFV+++L +IFDSA+NPV+G
Sbjct: 576  GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNG 635

Query: 1893 KCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQHYAALGRDSMEA 2072
              WW+ AEDPFQCLAAC+NLS+A++SS+PH VIS+LPIHQDGSCNGLQHYAALGRD++EA
Sbjct: 636  DRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEA 695

Query: 2073 AAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVDQVDRKLVKQTVM 2252
            AAVNLVAG+KPADVYS IAARV   + RD+ KDP  +P A LAKLL+DQVDRKLVKQTVM
Sbjct: 696  AAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVM 755

Query: 2253 TSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQMFYAARSIMKWL 2432
            TSVYGVTYIGAREQIKRRLEEKG I+DDRL F ASCYAAKVT++ALG++F AAR IM WL
Sbjct: 756  TSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWL 815

Query: 2433 ADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRYGDSVSVKQQKTA 2612
             DCAKVIA +NQPVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQR G+ V V++Q+TA
Sbjct: 816  GDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTA 875

Query: 2613 FPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQILREQFVELYKTP 2792
            FPPNFVHSLD SHMM+TA++CR+AGL+FAGVHDSFWTHACDVD+MN ILRE+FVELY  P
Sbjct: 876  FPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMP 935

Query: 2793 ILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            +LE+LLE F+T++P +TFP LP RGDFDL++VL+
Sbjct: 936  VLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLK 969


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1184 bits (3064), Expect = 0.0
 Identities = 576/886 (65%), Positives = 709/886 (80%), Gaps = 5/886 (0%)
 Frame = +3

Query: 252  ISTNGF--KDQIFTEEPPWLSPDCMPSCLPSFDQXXXXXXXXXXXXERKRYNELRRRQVK 425
            +  NG   + ++F ++PPW+S   +       DQ            ++++++ LRRRQVK
Sbjct: 112  VERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTLKIERKDI---DKRKFDSLRRRQVK 168

Query: 426  XXXXXXXXXXXXXXXXXXXXXXXXXXPSLPYVKSLFLGWFEPLRDAIKAEQRLQRGRRRK 605
                                      P+LPYVK +FLGWF+PL+D I+ EQ+LQ+ + +K
Sbjct: 169  EETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKK 228

Query: 606  --AAYAAHIGLLPAEKMAVIVMHKMMGLLMVGQEEECVRVVQAAVHIGDAIEQEVRICNF 779
              AAYA HI LLPA+KMAVIVMHKMMGL+M G E+ C++VVQAAV IG AIEQEVRI NF
Sbjct: 229  VRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNF 288

Query: 780  LQNTKRSRRGNSTQEVDNLSLNKEQEVLRQRVKNLLKKRKLTEVQKLVKREDNMKSWGRD 959
            L+ T+++  G+S +E+      KE+++LR+RV +L++++++ +  K+VK E   K WGR 
Sbjct: 289  LKRTRKNNAGDSQEEL------KEKQLLRKRVNSLIRRKRIIDALKVVKSEGT-KPWGRA 341

Query: 960  AQAKLGSRLIELLIESAFVQPPPSQSADIPPEIRPAFRHLFKTVGNEDG-KVKKRFGVIE 1136
             QAKLGSRL+ELLIE+A+VQPP +QS D  PE RPAFRH FKTV    G K+ +R+GVIE
Sbjct: 342  TQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIE 401

Query: 1137 CDPLVQKGLNSTARHMVIPCMPMLIPPKSWKGYDKGGHLFLPSYVMRTHGSREQQDAIKS 1316
            CD L+  GL+ +A+HM+IP +PML+PPK WKGYDKGG+LFLPSY+MRTHGS++QQDA+K 
Sbjct: 402  CDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKD 461

Query: 1317 VPRKQLQKVFQALDTLGSTKWRVNKRVLGVTEILWSRGGGIAGLINRENIPIPEKPDLED 1496
            +  K   +VF+ALDTLG+TKWRVN+ +L V E LW+ GG IAGL+NRE++PIPEKP  ED
Sbjct: 462  ISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSED 521

Query: 1497 SDELQKWRWSIKKAKKANCEMHALRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 1676
             +ELQ W+WS +KA K N E H+LRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH
Sbjct: 522  PEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 581

Query: 1677 SHLNHLSSDLCRGMLEFSEGRPLGKSGLRWLKIHLANLYGGGVQKLSYDGRLAFVENNLH 1856
             HLNHLSSDLCRG LEF+EGRPLGKSGL WLKIHLANLY GGV+KLS+D RLAFVEN+L 
Sbjct: 582  PHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLD 641

Query: 1857 DIFDSAANPVDGKCWWINAEDPFQCLAACINLSDAMRSSSPHDVISHLPIHQDGSCNGLQ 2036
            DI DSA NP+ GK WW+ AEDPFQCLAAC+ L+ A++S SP+ VISHLPIHQDGSCNGLQ
Sbjct: 642  DIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQ 701

Query: 2037 HYAALGRDSMEAAAVNLVAGDKPADVYSGIAARVLDTIRRDSMKDPANHPTALLAKLLVD 2216
            HYAALGRDS EAAAVNLVAG+KPADVYS I+ RV + +++DS KDP ++PTA LAK+L+ 
Sbjct: 702  HYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILIT 761

Query: 2217 QVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGQITDDRLLFTASCYAAKVTMNALGQ 2396
            QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG ITD+R+LF A+CY+AKVT+ ALG+
Sbjct: 762  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGE 821

Query: 2397 MFYAARSIMKWLADCAKVIASENQPVRWTTPLGLPVVQPYRNCKRHLIRTSLQVLALQRY 2576
            +F AAR+IM WL DCAK+IAS+N PVRW TPLGLPVVQPY   +RHLIRTSLQVLALQR 
Sbjct: 822  IFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQRE 881

Query: 2577 GDSVSVKQQKTAFPPNFVHSLDSSHMMMTAISCRNAGLQFAGVHDSFWTHACDVDQMNQI 2756
            G++V V++Q+TAFPPNFVHSLD +HMMMTA++CR AGL FAGVHDS+WTHACDVD MN+I
Sbjct: 882  GNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRI 941

Query: 2757 LREQFVELYKTPILENLLESFQTSFPTVTFPPLPDRGDFDLKKVLE 2894
            LRE+FVELY TPILE+LL+SFQ S+P + FPP+P RGDFDLK+VL+
Sbjct: 942  LREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLK 987