BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00001855
         (3017 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                1010   0.0  
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   995   0.0  
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   994   0.0  
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               982   0.0  
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   979   0.0  
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   978   0.0  
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   978   0.0  
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   976   0.0  
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       974   0.0  
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                973   0.0  
ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform ...   968   0.0  
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   964   0.0  
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              961   0.0  
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   959   0.0  
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]             959   0.0  
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]             956   0.0  
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g...   955   0.0  
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom...   955   0.0  
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   952   0.0  
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]                  952   0.0  

>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score = 1010 bits (2612), Expect = 0.0
 Identities = 561/938 (59%), Positives = 643/938 (68%), Gaps = 14/938 (1%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG 412
            M+ E    P L D  D+DD PIVFKR ++ SK  Q +S+T+K+SSQK DG   R      
Sbjct: 1    MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 60

Query: 413  PANGQSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKP--VQSNISSEHRSSIKDVEKRLP 586
            PANG+SSS QK +++PP+K S  KS     S   SKP  V+S +SS   S+     K+ P
Sbjct: 61   PANGESSSGQKGRMVPPSKPSQVKSPL---SSPPSKPSQVKSPLSSPKVSTSS--AKKSP 115

Query: 587  IKSEAENYDYSDDD----KPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXXXVPLSS 754
            + S   N   S       KP +  ++ +    + SS  +LA    N          PLS 
Sbjct: 116  VSSLPANSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGK-PLSL 174

Query: 755  KYPTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSNK 934
            ++  +S+   KG++   +   S          K  ++DS+D+KPL+SR  LKS VG S  
Sbjct: 175  RHSASSS---KGNTNQVSKEGS----------KPENEDSDDEKPLSSRFPLKSGVGESTS 221

Query: 935  --FTNSNEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXXXXXXXX 1108
              + + ++K LA  L+ NG+  +D        NM NKRP  D + S+  S+         
Sbjct: 222  KAYDSDDDKPLAKKLQHNGSAMRDGQPNKYS-NMSNKRPPGDIKSSNQLSVKKPKLSSVT 280

Query: 1109 XXXXXXXXXXXXX--RETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXX-IXXXXXX 1279
                            E DD DH+PISQRI                       +      
Sbjct: 281  APTNKKQASVKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKK 340

Query: 1280 XXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQ 1459
                          KVPP S  G+KW  LEHNGVIFPPPYKPHGIKMLY G+PVDLTPEQ
Sbjct: 341  SKKVMKNSKYSKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQ 400

Query: 1460 EEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEK 1639
            EEVATMFAVM DTDY  KP+F ENF  DW++ILGKNHVI+  E CDF+PIYEWH  EKEK
Sbjct: 401  EEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEK 460

Query: 1640 KKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKR 1819
            KKQMT+              +KYMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKLK+
Sbjct: 461  KKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 520

Query: 1820 RIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASS 1999
            RIRP DITINIGK+ PIPECP+PGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASS
Sbjct: 521  RIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASS 580

Query: 2000 TLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNEK 2179
            TLKG SDKEKYEKARLLKDYI  IRA YTKDF SKD TK+QIAVATYLIDKLALRAGNEK
Sbjct: 581  TLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEK 640

Query: 2180 DDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEXX 2359
            DDDEADTVGCCTLKVENV  VPPN ++FDFLGKDSIRY N VEVE  V+KAI  FR+   
Sbjct: 641  DDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRS--- 697

Query: 2360 XXXXXXSEG-DDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNL 2536
                   EG  DLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML+RETKGG++
Sbjct: 698  -----GKEGSSDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDV 752

Query: 2537 PEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGK 2716
             EK+ VYQ ANKEVAIICNHQR+VSKSH  QM +LNEKI+ LKA  EELK +LSR KKGK
Sbjct: 753  AEKVVVYQHANKEVAIICNHQRTVSKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGK 812

Query: 2717 PPL--KDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDP 2890
            PPL  K+ADGK ++NL+PE LEKK+ Q +A+IEKME DK+ KEDLKTVALGTSKINYLDP
Sbjct: 813  PPLKSKNADGKPKRNLNPESLEKKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDP 872

Query: 2891 RITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            RITVAWCKRHEVPIEKIFNKSLLAKFTWAMDV+PSFRF
Sbjct: 873  RITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPSFRF 910


>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  995 bits (2573), Expect = 0.0
 Identities = 535/933 (57%), Positives = 634/933 (67%), Gaps = 9/933 (0%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMS-KPRQLSSDTKKLSSQKNDGPVKRMASVQ 409
            M+ E  AK       DDDD P+VFKR +T S K  QL+S+ KK SSQ++DG   R  S  
Sbjct: 1    MAVEAPAKHVYDFDDDDDDGPVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSDV 60

Query: 410  GPANGQSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPI 589
               NGQSS++ KNK      +S+ KS  ++S  L+ K   S+             K LP+
Sbjct: 61   RSPNGQSSNAPKNK-----SISSSKSPPVKSPILSPKASTSST------------KALPV 103

Query: 590  KSEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAE---NSXXXXXXXXVPLSSKY 760
            KS   N+  S       S++   Q    A  E +  IK     NS        +PLS++ 
Sbjct: 104  KSPVVNFKASTSLND-QSKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARL 162

Query: 761  PTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSNKFT 940
               S    KG+S  +       V + EV +   ++D +D+ PL++R  +KS+ G S+   
Sbjct: 163  KGISNQGNKGASTSAPAQSRRLVPKTEVKVS--AEDPDDEAPLSARFNVKSNTGTSSSRL 220

Query: 941  NS--NEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXXXXXXXXXX 1114
            +    +K LA+ +++NG+  K          +  KRPL     S   S            
Sbjct: 221  HDCDEKKPLASKIQQNGSIMKGKQQN--SSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTT 278

Query: 1115 XXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXX--IXXXXXXXXX 1288
                       +  +D DHMPI+QR+                                  
Sbjct: 279  MKTKQVTVKAEKADEDDDHMPIAQRMKKSTASNSKLSSMKQKTTKVVSSSFKKINKKSKK 338

Query: 1289 XXXXXXXXXXLKVPPGS-DGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQEE 1465
                       KVPP S DG +KW+TL HNGVIFP PY PHG+KMLY+G+PVDLTPEQEE
Sbjct: 339  EMKSSKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEE 398

Query: 1466 VATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEKKK 1645
            VATMFAVMKDTDY +K +F +NF  DW ++LGKNH IK  + CDFTPIYEWHL+EKEKKK
Sbjct: 399  VATMFAVMKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKK 458

Query: 1646 QMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 1825
            QM+S              +K+MWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI
Sbjct: 459  QMSSEEKKALKEEKLKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 518

Query: 1826 RPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTL 2005
            RP DITINIGK+ PIPECPIPGERWK+++HDNTVTWLAFWNDPINPKEFKYVFLAASS+L
Sbjct: 519  RPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 578

Query: 2006 KGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNEKDD 2185
            KGQSDKEKYEKAR+LKDYI NIRA YTKDFT+KD  KRQIAVATYLIDKLALRAGNEKDD
Sbjct: 579  KGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAVATYLIDKLALRAGNEKDD 638

Query: 2186 DEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEXXXX 2365
            DEADTVGCCTLKV NV  +PPNK++FDFLGKDSI+Y NTVEVELPVYKAIG F+T     
Sbjct: 639  DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT----- 693

Query: 2366 XXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNLPEK 2545
                S+ DDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD+MLN+ETK G++ EK
Sbjct: 694  --GKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKETKDGDVAEK 751

Query: 2546 IAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGKPPL 2725
            + VYQ+ANKEVAIICNHQRS+SKSH  QMS+L EKI  LK   +ELK++L RAKKGKPPL
Sbjct: 752  VVVYQRANKEVAIICNHQRSISKSHSAQMSRLTEKITELKGVLKELKIDLDRAKKGKPPL 811

Query: 2726 KDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRITVA 2905
            KDADGK ++NL+P+ ++KK+ Q +A+IEKME D + KEDLKTVALGTSKINYLDPRITVA
Sbjct: 812  KDADGKQKRNLTPQAIQKKIDQTNAKIEKMERDMQTKEDLKTVALGTSKINYLDPRITVA 871

Query: 2906 WCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            WCKRHEVPIEKIFNKSLLAKF WAMDV+P FRF
Sbjct: 872  WCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFRF 904


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  994 bits (2569), Expect = 0.0
 Identities = 538/881 (61%), Positives = 618/881 (70%), Gaps = 18/881 (2%)
 Frame = +2

Query: 416  ANGQSSSSQKNKVMPPAKMSTE--KSTSMRSSYLASKPVQSNISS-EHRSSIKDVEKRLP 586
            ANG+S  S+ +K +  AK+S    K  S     L+S  +QS  +  + + S  D E  +P
Sbjct: 12   ANGESEDSEDDKPLS-AKLSARLPKGNSHVLKGLSSPVLQSQKTKVDVKKSDGDSEDEVP 70

Query: 587  IKSE--AENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKA---ENSXXXXXXXXVPLS 751
            + S+   + Y  S   K L S+   S        E K+ +K    ++         + L 
Sbjct: 71   LSSKFPLKTYVRSSSGKSLGSKGLNSPSLSSHPPETKVGVKESSDDSEDEIPLLLKLQLK 130

Query: 752  SKYPTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPS- 928
            S+   +S+ +     + S  S   + Q+ +V+ K  SDDSED+ PL+S+  LK+ +G S 
Sbjct: 131  SRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFRLKTGMGASL 190

Query: 929  NKFTNSNEKL-LATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXXXXXXX 1105
            +K  N +EK  L +TLK NG +KKD   ++  P   NKRPL     S   S         
Sbjct: 191  DKLDNFDEKKPLTSTLKPNGISKKDD-ERVKSPKGQNKRPLGQANTSHHSSSKKPKLLDG 249

Query: 1106 XXXXXXXXXXXXXXRETDDTD-------HMPISQRIXXXXXXXXXXXXXXXXXXXXXXIX 1264
                          ++ DD D       + P  +R+                        
Sbjct: 250  SVKGKVKQVSVKAEQKDDDDDDNDDDDEYTPTVKRLKKSVSSDNKKASKTKVIPSSRKKA 309

Query: 1265 XXXXXXXXXXXXXXXXXXLKVPPGSDG-GQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPV 1441
                                  P + G GQKWTTLEHNGVIFPPPYKPHG+KMLYNG+PV
Sbjct: 310  TKKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPV 369

Query: 1442 DLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWH 1621
            DLTPEQEEVATMFAVMKDTDYATKP+FIENFMNDWR  LGKNHVIKKFELCDFTPIYEWH
Sbjct: 370  DLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWH 429

Query: 1622 LREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPK 1801
             +EKEKKKQMT+              DKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPK
Sbjct: 430  EKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPK 489

Query: 1802 MGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYV 1981
            MGKLK+RI P DITINIGK  P+PECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYV
Sbjct: 490  MGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYV 549

Query: 1982 FLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLAL 2161
            FLAASS+LKGQSDKEKYEKARLLKDYI NIRA YTKDFT+KD  KRQIAVATYLIDKLAL
Sbjct: 550  FLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLAL 609

Query: 2162 RAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGD 2341
            RAGNEKDDDEADTVGCCTLKVENV LVPPNK++FDFLGKDSIRYFNTVEVELPVYKAIG 
Sbjct: 610  RAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQ 669

Query: 2342 FRTEXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRET 2521
            F+T         S GDDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD+MLNRE 
Sbjct: 670  FKT-------GKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREA 722

Query: 2522 KGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSR 2701
            +GG+  EKI +YQ ANKEVAIICNHQRSVSKSH+ QMS+L+EK+  L+   +ELK +L+R
Sbjct: 723  RGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTDLAR 782

Query: 2702 AKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINY 2881
            AKKGKPPLKD+DGK +KN++PEVLE+K+ Q + +IEKME D K KEDLKTVALGTSKINY
Sbjct: 783  AKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINY 842

Query: 2882 LDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            LDPRI+VAWCKR EVPIEKIFNKSLLAKF WAMDV+PSFRF
Sbjct: 843  LDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 883


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  982 bits (2539), Expect = 0.0
 Identities = 537/942 (57%), Positives = 635/942 (67%), Gaps = 18/942 (1%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG 412
            M+ +   K  + D  D+DD P+VFKR++  SK  QL+SDTKK SSQ+ DG   R  S   
Sbjct: 1    MAVQACVKEKMMDEIDEDDEPLVFKRSNATSKHNQLNSDTKK-SSQRYDGQSGRQVSDVP 59

Query: 413  PANGQSSSSQKNKVMPPAKM-----STEKSTSMRSSYLASKPVQSNIS---SEHRSSIKD 568
              NGQSSS+ K K    + M     S + STS   +   + P  S+ S   S+H S    
Sbjct: 60   STNGQSSSASKGKTTKLSSMKSPIASPKASTSFAKASPVANPKVSSSSDDRSKHSSKQNT 119

Query: 569  V----EKRLPIKSEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXX 736
            +    E++  +   AE Y  S+D+KPLS+R         +++ NK  I +          
Sbjct: 120  INVVKEEKELVNPAAEPYGDSEDEKPLSARLFTGLTKGSSNNANKGLINSS--------- 170

Query: 737  XVPLSSKYPTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSS 916
                      AS  VPK                   +I ++SDDS+D+ PL+S+  LK++
Sbjct: 171  ---------PASLPVPKP------------------EINRYSDDSDDEIPLSSKFRLKAN 203

Query: 917  VGPSN--KFTNSNEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXX 1090
             G S    + + + K L +  ++NG+  + S S +     +NKRPL + + S   S+   
Sbjct: 204  AGTSTVKSYESDDNKTLVSNFQQNGSINRGSKSSI----KVNKRPLGEVKSSVQSSVKKP 259

Query: 1091 XXXXXXXXXXXXXXXXXXXRETDDTD--HMPISQRIXXXXXXXXXXXXXXXXXXXXXX-- 1258
                                + DD+D  H+PISQR+                        
Sbjct: 260  KLSDASTPVNNKQASKKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQKVTKVVSSS 319

Query: 1259 IXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQP 1438
            +                    KVPP S  G+KW TL HNGVIFPPPYKPHG+KMLY G+P
Sbjct: 320  MKKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNTLVHNGVIFPPPYKPHGVKMLYKGKP 379

Query: 1439 VDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEW 1618
            VDLTPEQEEVATMFAVM DTDY TK KF ENFM+DWR+ILGKNHVI+  E CDFTPIYEW
Sbjct: 380  VDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDWRKILGKNHVIQNLEDCDFTPIYEW 439

Query: 1619 HLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHP 1798
            H REKEKKK+MT+              +KYMWA+V+GVKEKVGNFRVEPP LFRGRGEHP
Sbjct: 440  HQREKEKKKKMTAEEKKVLKEERLKQEEKYMWAIVNGVKEKVGNFRVEPPSLFRGRGEHP 499

Query: 1799 KMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKY 1978
            KMGKLK+ IRP DITINIGK+ PIPECPIPGE WKE+RHDNTVTWLAFWNDPI P+EFKY
Sbjct: 500  KMGKLKKCIRPSDITINIGKDAPIPECPIPGESWKEIRHDNTVTWLAFWNDPIKPREFKY 559

Query: 1979 VFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLA 2158
            VFLAASS+LKGQSDKEKYEKARLLKD+I  IRA YTKDF SKD TKRQIAVATYLIDKLA
Sbjct: 560  VFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIAVATYLIDKLA 619

Query: 2159 LRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIG 2338
            LRAGNEKDDDEADTVGCCTLKVENV   PP+ ++FDFLGKDSIRY N VEVELPVYKAI 
Sbjct: 620  LRAGNEKDDDEADTVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEVEVELPVYKAIQ 679

Query: 2339 DFRTEXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRE 2518
             FRT           GDDLFD LDTSKLNAHLK LMPGLTAKVFRTYNASITLD+ML+RE
Sbjct: 680  QFRT-------GKRGGDDLFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASITLDEMLSRE 732

Query: 2519 TKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLS 2698
            TKGGN+ EKI VYQ ANKEVAIICNHQR+VSKSH  QM++LN KID LK   + L+ +L+
Sbjct: 733  TKGGNVAEKIVVYQHANKEVAIICNHQRTVSKSHPAQMTRLNGKIDELKGILDGLQTDLA 792

Query: 2699 RAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKIN 2878
            RAKKGKPPL+DADGK ++NL+PE LE+K+ Q +A+IEKME DK+ KE LKT+ALGTSKI+
Sbjct: 793  RAKKGKPPLEDADGKPKRNLTPEALERKIGQTNAKIEKMERDKETKEGLKTIALGTSKIS 852

Query: 2879 YLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            YLDPRITVAWCKRHEVPIEK+FNKSLLAKF W+MDV+PSFRF
Sbjct: 853  YLDPRITVAWCKRHEVPIEKVFNKSLLAKFAWSMDVDPSFRF 894


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  979 bits (2531), Expect = 0.0
 Identities = 531/951 (55%), Positives = 642/951 (67%), Gaps = 35/951 (3%)
 Frame = +2

Query: 257  PFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG--PANG-- 424
            P + D+ DD++ PI FKR+ST  K R   + TK+  S  N GP++   +V      NG  
Sbjct: 6    PVMFDN-DDEEGPISFKRSSTSVKNRP--TPTKQEGSSGNAGPIRSPKAVASNQQKNGLT 62

Query: 425  ----------QSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVE 574
                      QSSS     +      S+++ +S  S+ +    ++     +     +D  
Sbjct: 63   GVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSEDDH 122

Query: 575  KRLPIKSEAENYDY------------SDDDKPLSSRRNGSQKAPQASSENKLAIKAE--- 709
            K + ++ + E+ +             SDDDKPLS + N S K P +S+   + +K     
Sbjct: 123  KPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKIN-STKTPSSSANKAIVLKTTPKI 181

Query: 710  NSXXXXXXXXVPLSSKYPTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPL 889
                       PL+S+ PT +A + +G +V                    SDDSED+KPL
Sbjct: 182  EQPGDDSEDDKPLASRLPTNAA-LKRGGNV--------------------SDDSEDEKPL 220

Query: 890  ASRLTLKSSVGPSNKFTNSNEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISS 1069
            A+R + K +   S   ++S +K+L+ ++K + ++K  +       N + KRP+ +N  +S
Sbjct: 221  AARFS-KVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSI-KRPIDNNNQTS 278

Query: 1070 GPSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXX 1249
                                       + DD D++P+SQR+                   
Sbjct: 279  SA------LKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKS 332

Query: 1250 XXXIXXXXXXXXXXXXXXXXXXX------LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHG 1411
               +                         +KVPPGS GGQKWTTL H+GVIFPPPYKPHG
Sbjct: 333  PSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHG 392

Query: 1412 IKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFEL 1591
            +KMLYNGQPVDLTPEQEEVATMFAVMKDTDYA+K  FI+NF  DWR+ILGKNHVIKKFEL
Sbjct: 393  VKMLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFEL 452

Query: 1592 CDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPG 1771
            CDFTPIYEWHLREKEKKKQMTS              +KYMWA+VDGVKEKVGNFRVEPPG
Sbjct: 453  CDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPG 512

Query: 1772 LFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWND 1951
            LFRGRGEHPKMGKLKRRI+P DITINIGK  PIPECPIPGE WKEV+HDNTVTWLAFWND
Sbjct: 513  LFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWND 572

Query: 1952 PINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAV 2131
            PI+ K+FKYVFLAASS LKGQSDKEKYEK+R LK ++H IR  YTKDF SKD TK+QIAV
Sbjct: 573  PISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAV 632

Query: 2132 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEV 2311
            ATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+NV  VPPNK+QFDFLGKDSIRYFNTVEV
Sbjct: 633  ATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEV 692

Query: 2312 ELPVYKAIGDFRTEXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASI 2491
            EL VYKAI +FR            G DLFD LDT++LNAHLK+LMPGLTAKVFRTYNASI
Sbjct: 693  ELLVYKAIEEFRA-------GKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASI 745

Query: 2492 TLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAE 2671
            TLDD+L++ET+ G L EKIAVYQ+ANKEVAIICNHQRSVSKSH++QM++LNEKID LKA+
Sbjct: 746  TLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQ 805

Query: 2672 REELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKT 2851
            R+ELK +LS+ +KGK    D DGK ++NL+PE  EKK+ QI+ +IEKME+DKKIKEDLKT
Sbjct: 806  RDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKT 865

Query: 2852 VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL+AKF+WAMDV+P FRF
Sbjct: 866  VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  978 bits (2528), Expect = 0.0
 Identities = 531/936 (56%), Positives = 633/936 (67%), Gaps = 20/936 (2%)
 Frame = +2

Query: 257  PFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQGPANGQSSS 436
            P + D+ DDD+ P+ FKR+S   K R   + TK   S  N G V+   SV       +SS
Sbjct: 6    PVMFDN-DDDEGPVSFKRSSASVKNRP--TPTKPEGSSGNVGSVRSPKSV-------ASS 55

Query: 437  SQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIKS--EAENY 610
             Q+N +   ++   ++  S   +      VQ N S EH ++   ++K    +   E ++ 
Sbjct: 56   QQRNGLTGVSRPLQQRPQSSTPNPRPLGSVQLNSSKEHNNNSNAMDKSKLKRPFVEDKSD 115

Query: 611  DYSDDDKPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXXXVPL---SSKYPTASADV 781
            D  DD KP+  RR    K     +  K A+ +E +        + L   S+K P+ S + 
Sbjct: 116  DSEDDHKPIGLRRKVEDK-----NFKKAAVGSETADDSDDNKPLSLKINSTKTPSNSTNK 170

Query: 782  PKGSSVHSNVSVSIEVQRMEVDIKKH-------------SDDSEDDKPLASRLTLKSSVG 922
                 V   +    +    E  + +              SDDSED+KPLA+R + K +  
Sbjct: 171  ASVLKVTPKIVQPADDSEDEKPLARRLPAKTTLKSGANASDDSEDEKPLAARFS-KVTGS 229

Query: 923  PSNKFTNSNEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXXXXXX 1102
             S   ++S +K+ +  LK + ++K  +       N + KRP+ +N  S            
Sbjct: 230  ASASISSSKDKVQSANLKPSSSSKVSNNDTNTSRNSI-KRPIDNNNQSISA------LKK 282

Query: 1103 XXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXXXXXX 1282
                            + DD D++P+SQR+                              
Sbjct: 283  ARPSDVSVSASVKRESKADDNDNIPLSQRLKMGESSKSKPPAKNIVKKNPSSFKKDSKKM 342

Query: 1283 XXXXXXXXXXXX--LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPE 1456
                          +KVPPGS GGQKWTTL HNGVIFPPPYKPHG+KMLYNGQPVDLTPE
Sbjct: 343  KTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHNGVIFPPPYKPHGVKMLYNGQPVDLTPE 402

Query: 1457 QEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKE 1636
            QEEVATMF+VMKDTDYA+K  FI+NF  DWR+ILGKNH+IKKFELCDFTPIYEWHLREKE
Sbjct: 403  QEEVATMFSVMKDTDYASKQTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKE 462

Query: 1637 KKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 1816
            KKKQMTS              +KYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK
Sbjct: 463  KKKQMTSEEKKAVKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 522

Query: 1817 RRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAAS 1996
            RRI+P DITINIGK  PIPECPIPGE WKEV+HDNTVTWLAFWNDPI+ K+FKYVFLAAS
Sbjct: 523  RRIQPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAAS 582

Query: 1997 STLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNE 2176
            S LKGQSDKEKYEK+R LK +IH IR  YTKDF SKD TK+QIAVATYLIDKLALRAGNE
Sbjct: 583  SALKGQSDKEKYEKSRKLKHHIHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNE 642

Query: 2177 KDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEX 2356
            KDDDEA+TVGCCTLKV+NV  VPPN +QFDFLGKDSIRYFNTVEVELPVYKAI +FR   
Sbjct: 643  KDDDEAETVGCCTLKVDNVTCVPPNNLQFDFLGKDSIRYFNTVEVELPVYKAIEEFRA-- 700

Query: 2357 XXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNL 2536
                     GDDLFD LDT++LNAHLK+LMPGLTAKVFRTYNASITLDD+L++ET+ G L
Sbjct: 701  -----GKKPGDDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTL 755

Query: 2537 PEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGK 2716
             EKIAVYQ+ANKEVAIICNHQRSVSKSH++QM++LNEKID LKA+R+ELK +LS+ KKGK
Sbjct: 756  LEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVKKGK 815

Query: 2717 PPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRI 2896
                D DGK ++NL+PE  EKK+ Q++ +IEKME+DKKIKEDLKTVALGTSKINYLDPRI
Sbjct: 816  SLGYDKDGKPKRNLAPEAFEKKISQVETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRI 875

Query: 2897 TVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            TVAWCKRHEVPIEKIFNKSL+AKF+WAMDV+P FRF
Sbjct: 876  TVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 911


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  978 bits (2527), Expect = 0.0
 Identities = 530/951 (55%), Positives = 642/951 (67%), Gaps = 35/951 (3%)
 Frame = +2

Query: 257  PFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG--PANG-- 424
            P + D+ DD++ PI FKR+ST  K R   + TK+  S  N GP++   +V      NG  
Sbjct: 6    PVMFDN-DDEEGPISFKRSSTSVKNRP--TPTKQEGSSGNAGPIRSPKAVASNQQKNGLT 62

Query: 425  ----------QSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVE 574
                      QSSS     +      S+++ +S  S+ +    ++     +     +D  
Sbjct: 63   GVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSEDDH 122

Query: 575  KRLPIKSEAENYDY------------SDDDKPLSSRRNGSQKAPQASSENKLAIKAE--- 709
            K + ++ + E+ +             SDDDKPLS + N S K P +S+   + +K     
Sbjct: 123  KPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKIN-STKTPSSSANKAIVLKTTPKI 181

Query: 710  NSXXXXXXXXVPLSSKYPTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPL 889
                       PL+S+ PT +A + +G +V                    SDDSED+KPL
Sbjct: 182  EQPGDDSEDDKPLASRLPTNAA-LKRGGNV--------------------SDDSEDEKPL 220

Query: 890  ASRLTLKSSVGPSNKFTNSNEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISS 1069
            A+R + K +   S   ++S +K+L+ ++K + ++K  +       N + KRP+ +N  +S
Sbjct: 221  AARFS-KVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSI-KRPIDNNNQTS 278

Query: 1070 GPSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXX 1249
                                       + DD D++P+SQR+                   
Sbjct: 279  SA------LKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKS 332

Query: 1250 XXXIXXXXXXXXXXXXXXXXXXX------LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHG 1411
               +                         +KVPPGS GGQKWTTL H+GVIFPPPYKPHG
Sbjct: 333  PSSLKKDNKKMKMKLKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHG 392

Query: 1412 IKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFEL 1591
            +K+LYNGQPVDLTPEQEEVATMFAVMKDTDYA+K  FI+NF  DWR+ILGKNHVIKKFEL
Sbjct: 393  VKILYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFEL 452

Query: 1592 CDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPG 1771
            CDFTPIYEWHLREKEKKKQMTS              +KYMWA+VDGVKEKVGNFRVEPPG
Sbjct: 453  CDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPG 512

Query: 1772 LFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWND 1951
            LFRGRGEHPKMGKLKRRI+P DITINIGK  PIPECPIPGE WKEV+HDNTVTWLAFWND
Sbjct: 513  LFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWND 572

Query: 1952 PINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAV 2131
            PI+ K+FKYVFLAASS LKGQSDKEKYEK+R LK ++H IR  YTKDF SKD TK+QIAV
Sbjct: 573  PISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAV 632

Query: 2132 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEV 2311
            ATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+NV  VPPNK+QFDFLGKDSIRYFNTVEV
Sbjct: 633  ATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEV 692

Query: 2312 ELPVYKAIGDFRTEXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASI 2491
            EL VYKAI +FR            G DLFD LDT++LNAHLK+LMPGLTAKVFRTYNASI
Sbjct: 693  ELLVYKAIEEFRA-------GKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASI 745

Query: 2492 TLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAE 2671
            TLDD+L++ET+ G L EKIAVYQ+ANKEVAIICNHQRSVSKSH++QM++LNEKID LKA+
Sbjct: 746  TLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQ 805

Query: 2672 REELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKT 2851
            R+ELK +LS+ +KGK    D DGK ++NL+PE  EKK+ QI+ +IEKME+DKKIKEDLKT
Sbjct: 806  RDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKT 865

Query: 2852 VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL+AKF+WAMDV+P FRF
Sbjct: 866  VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  976 bits (2522), Expect = 0.0
 Identities = 538/933 (57%), Positives = 633/933 (67%), Gaps = 17/933 (1%)
 Frame = +2

Query: 257  PFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASV--QGPANGQS 430
            P L D+ DDDD PI FKR+S   K  + +   ++ SS     PV+    V      NG S
Sbjct: 9    PVLFDN-DDDDGPISFKRSSNSVKSSRPTPSKQEGSSGGAGVPVRSQKHVAPNQQKNGVS 67

Query: 431  SSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIKSEAENY 610
            +S  +   M P   S  +  S      +S    S  +S  +S +K      P+  E EN 
Sbjct: 68   ASVSRPMHMKPPPSSPNQRPSGSGQPNSSAAHSSKSNSNDKSKLKR-----PLVKE-ENS 121

Query: 611  DYSDDDKPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXXXVPLSSKYPTASADVPKG 790
            D SDDD P+  R+   +K  +   E     KA++S         PLS K           
Sbjct: 122  DDSDDDVPIGLRKKVEEKKLKRVDE-----KADDSDDDK-----PLSLKI--------NS 163

Query: 791  SSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSV--GPSNKFTNSNEKLLA 964
            S + SN +    +Q+    +++  +DS+DDKPLASRL   ++   G +    + +EK LA
Sbjct: 164  SKMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLA 223

Query: 965  TTLKE---NGNTKKDSVSKLVP-----PNMLNKRPLSDNRISSGPSIXXXXXXXXXXXXX 1120
                +   +GN K  S SK +      P  L KRPL ++  +S                 
Sbjct: 224  ARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQTS------LALKKAKPSNV 277

Query: 1121 XXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXX 1300
                      + DD D+ P++QR+                      +             
Sbjct: 278  SASASVKREIKADDNDNTPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVKT 337

Query: 1301 XXXXXX-----LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQEE 1465
                       +KVPPGS GG+KWTTLEHNGVIFPPPYKPHG+KMLYNGQPVDLTPEQEE
Sbjct: 338  KMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEE 397

Query: 1466 VATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEKKK 1645
            VATMFAVMKDTDYA KP FIENF  DWR +LGKNHVIKKFELCDFTPIYEWHLREKEKKK
Sbjct: 398  VATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKK 457

Query: 1646 QMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 1825
            QMT+              +KYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI
Sbjct: 458  QMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 517

Query: 1826 RPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTL 2005
            +P DITINIG++ P+PECPIPGERWKEV+HDNTVTWLAFWNDPI+ K+FKYVFLAASS+L
Sbjct: 518  KPSDITINIGEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSL 577

Query: 2006 KGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNEKDD 2185
            KGQSDKEKYEK+R LK YI +IR NYTKDF SKD  KRQIAVATYLIDKLALRAGNEKD+
Sbjct: 578  KGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKDE 637

Query: 2186 DEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEXXXX 2365
            DEADTVGCCTLKV+NV  +PPNKIQFDFLGKDSIRYFNTVEVE  VYKAI  FR      
Sbjct: 638  DEADTVGCCTLKVDNVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRA----- 692

Query: 2366 XXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNLPEK 2545
                  G DLFD LDT++LNAHLK+LMPGLTAKVFRTYNASITLD +L++ET+ G L EK
Sbjct: 693  --GKKPGKDLFDQLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDGILHKETEDGTLLEK 750

Query: 2546 IAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGKPPL 2725
            IAVYQ+ANKEVAIICNHQRSVSKSHE+QM++LNE+ID LKA+R+ELKV+LS+AKKGKP  
Sbjct: 751  IAVYQRANKEVAIICNHQRSVSKSHESQMTRLNERIDDLKAQRDELKVDLSKAKKGKPLG 810

Query: 2726 KDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRITVA 2905
             D +GK ++NL+P+ +EKK+  I+ +IEKME++KK KEDLKTVALGTSKINYLDPRITVA
Sbjct: 811  YDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDPRITVA 870

Query: 2906 WCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            WCKRHEVPIEKIFNKSL+AKF WAMDV+P FRF
Sbjct: 871  WCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFRF 903


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  974 bits (2518), Expect = 0.0
 Identities = 544/948 (57%), Positives = 632/948 (66%), Gaps = 34/948 (3%)
 Frame = +2

Query: 263  LHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQGPANGQSSSSQ 442
            L +  +DD  P++FKR+    K  Q +S+ KKLS QK DG      S   PANG+SSS+Q
Sbjct: 10   LMEDMEDDGGPVIFKRSKPAPKQNQANSEKKKLSLQKQDGQSAVHTSDVRPANGESSSAQ 69

Query: 443  KNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIKSEAENYDYSD 622
            K ++ P AK    KS         S P  SN S+          K  PI S   N   S 
Sbjct: 70   KGRIQPSAKTPPVKSP-------LSSPKASNSSA----------KASPITSPGANSKPSA 112

Query: 623  DDKPLSSRRNGSQKAPQASSENKLAIKAE--NSXXXXXXXXVPLSSKYPTASADVPKGSS 796
                 + ++N   K+  A  E K ++ A   NS         PLS++    S+   KG S
Sbjct: 113  SATSTAKQQN-HHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSS---KGKS 168

Query: 797  VHSNVSV--SIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSNK--FTNSNEKLLA 964
             H+N     S  ++R  ++    S+DSED+KPL+ R T KSS+G S    + +  +K LA
Sbjct: 169  NHANKEGGDSCSIRRPVIE---ESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKKPLA 225

Query: 965  TTLKENGNTKKD-------SVSKLVPPN---MLNKRPLSDNRISSG-------------- 1072
              +++NG+  +D       S+S   PP     LN+  +   ++SS               
Sbjct: 226  AKVQQNGSASRDGPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPE 285

Query: 1073 PSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXX 1252
            P                         + DD D++PISQRI                    
Sbjct: 286  PKAEDDDDNIPLSQRGKKSQSATSKPKDDDDDNVPISQRIKKSPASVSKSSVPVKKASTV 345

Query: 1253 XX--IXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLY 1426
                +                    KVPPGS  GQKWTTL HNGVIFPPPYKPHG+KMLY
Sbjct: 346  VSSSLKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLY 405

Query: 1427 NGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTP 1606
              QP+ LTPEQEEVATMFAVM DTDY  KP F ENF +DW++ILGKNH+I+  E CDF P
Sbjct: 406  KRQPITLTPEQEEVATMFAVMLDTDYMNKPCFKENFFSDWKKILGKNHMIQNLEDCDFGP 465

Query: 1607 IYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGR 1786
            IYEWH +EKEKKKQMT+              +KYMWA+VDGVKEKVGNFRVEPPGLFRGR
Sbjct: 466  IYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGR 525

Query: 1787 GEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPK 1966
            GEHPKMGKLK+RIRPRDITINIGK+ PIPECPIPGERWKEVR+ NTVTWLA+WNDPIN K
Sbjct: 526  GEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNGNTVTWLAYWNDPINQK 585

Query: 1967 EFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFT-SKDATKRQIAVATYL 2143
            EFKYVFLAASSTLKGQSDKEKYEKARLLKDYIH IRA YTKDFT +KD  K+QIAVATYL
Sbjct: 586  EFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYL 645

Query: 2144 IDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPV 2323
            IDKLALRAGNEKDDDEADTVGCCTLKVENV  VPPN ++FDFLGKDSIRY N V+VE  V
Sbjct: 646  IDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAV 705

Query: 2324 YKAIGDFRTEXXXXXXXXSEG-DDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLD 2500
            +KAI  FR+          EG +DLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD
Sbjct: 706  FKAIQQFRS--------GKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLD 757

Query: 2501 DMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREE 2680
            DML++ETKGG + E + VYQ ANKEVAIICNHQR+VSKSH  QMS+LNEKID LK   EE
Sbjct: 758  DMLSKETKGGEVAENVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEE 817

Query: 2681 LKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVAL 2860
            LK +LSRAKKGKPP K ADGK+++NL+PE LE+K+ Q +A+IEKME DK+ KEDLKTVAL
Sbjct: 818  LKTDLSRAKKGKPPTKGADGKAKRNLNPEALERKITQTNAKIEKMERDKETKEDLKTVAL 877

Query: 2861 GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF W+MDV+PSFRF
Sbjct: 878  GTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 925


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  973 bits (2516), Expect = 0.0
 Identities = 543/952 (57%), Positives = 635/952 (66%), Gaps = 36/952 (3%)
 Frame = +2

Query: 257  PFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQGPANGQSSS 436
            P L +  +DD+ P++FKR++  SK  Q +S+ KKLS QK+ G      S   PANG+SSS
Sbjct: 8    PNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVRPANGESSS 67

Query: 437  SQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIKSEAENYDY 616
            +QK ++ P AK    KS         S P  SN S+          K  PI S   N   
Sbjct: 68   AQKGRIQPSAKTPPVKSP-------LSSPKASNSSA----------KASPITSPGANSKP 110

Query: 617  SDDDKPLSSRRNGSQKAPQASSENKLAIKAE--NSXXXXXXXXVPLSSKYPTASADVPKG 790
            S      + ++N   K+  A  E K ++ A   NS         PLS++    S+   KG
Sbjct: 111  SASATSTAKQQN-HHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSS---KG 166

Query: 791  SSVHSNVSV--SIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSNK--FTNSNEKL 958
             S H+N     S  ++R  ++    S+DSED+KPL+ R T KSS+G S    + +  +K 
Sbjct: 167  KSNHANKEGGDSCSIRRRVIE---ESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKP 223

Query: 959  LATTLKENGNTKKD-------SVSKLVPPN---MLNKRPLSDNRISSG------------ 1072
            LA  +++NG+  +D       S+S   PP     LN+  +   ++SS             
Sbjct: 224  LAAKVQQNGSVSRDGPMNKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVK 283

Query: 1073 ----PSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXX 1240
                P                         + +D D++PI+QRI                
Sbjct: 284  PEPEPKAEDDDDNIPLSQRGKKSQAATSKPKDEDDDNVPIAQRIKKSPASVSKSSAPVKK 343

Query: 1241 XXXXXX--IXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGI 1414
                    +                    KVPPGS  GQKWTTL HNGVIFPPPY PHG+
Sbjct: 344  ASTVVSPSLKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGV 403

Query: 1415 KMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELC 1594
            KMLY  QP+ LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGKNH I+  E C
Sbjct: 404  KMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLEDC 463

Query: 1595 DFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGL 1774
            DF PIYEWH +EKEKKKQMT+              +KYMWA+VDGVKEKVGNFRVEPPGL
Sbjct: 464  DFGPIYEWHQQEKEKKKQMTTEEKKALKEDKLQQEEKYMWAIVDGVKEKVGNFRVEPPGL 523

Query: 1775 FRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDP 1954
            FRGRGEHPKMGKLK+RIRPRDITINIGK+ PIPECPIPGERWKEVR+DNTVTWLAFW DP
Sbjct: 524  FRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWIDP 583

Query: 1955 INPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFT-SKDATKRQIAV 2131
            IN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIH IRA YTKDFT +KD  K+QIAV
Sbjct: 584  INQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAV 643

Query: 2132 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEV 2311
            ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV  VPPN ++FDFLGKDSIRY N V+V
Sbjct: 644  ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQV 703

Query: 2312 ELPVYKAIGDFRTEXXXXXXXXSEG-DDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNAS 2488
            E  V+KAI  FR+          EG +DLFD LDTSKLNAHLKELMPGLTAKVFRTYNAS
Sbjct: 704  EPAVFKAIQQFRS--------GKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNAS 755

Query: 2489 ITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKA 2668
            ITLDDML++ETKGG + EK+ VYQ ANKEVAIICNHQR+VSKSH  QMS+LNEKID LK 
Sbjct: 756  ITLDDMLSKETKGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKT 815

Query: 2669 EREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLK 2848
              EELK +LSR KKGKPP K ADGK ++NL+PE LE+K+ QI+A+IEKME DK+ KEDLK
Sbjct: 816  AMEELKTDLSRVKKGKPPSKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKEDLK 875

Query: 2849 TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF W+MDV+PSFRF
Sbjct: 876  TVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 927


>ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform X2 [Setaria italica]
          Length = 930

 Score =  968 bits (2502), Expect = 0.0
 Identities = 538/953 (56%), Positives = 633/953 (66%), Gaps = 37/953 (3%)
 Frame = +2

Query: 257  PFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASV--QGPANGQS 430
            P L D+ DDDD PI FKR+S   K  + +   ++ SS     PV+    V      NG S
Sbjct: 9    PVLFDN-DDDDGPISFKRSSNSVKSSRPTPSKQEGSSGGAGVPVRSQKHVAPNQQKNGVS 67

Query: 431  SSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIKSEAENY 610
            +S  +   M P   S  +  S      +S    S  +S  +S +K      P+  E EN 
Sbjct: 68   ASVSRPMHMKPPPSSPNQRPSGSGQPNSSAAHSSKSNSNDKSKLKR-----PLVKE-ENS 121

Query: 611  DYSDDDKPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXXXVPLSSKYPTASADVPKG 790
            D SDDD P+  R+   +K  +   E     KA++S         PLS K           
Sbjct: 122  DDSDDDVPIGLRKKVEEKKLKRVDE-----KADDSDDDK-----PLSLKI--------NS 163

Query: 791  SSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSV--GPSNKFTNSNEKLLA 964
            S + SN +    +Q+    +++  +DS+DDKPLASRL   ++   G +    + +EK LA
Sbjct: 164  SKMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLA 223

Query: 965  TTLKE---NGNTKKDSVSKLVP-----PNMLNKRPLSDNRISSGPSIXXXXXXXXXXXXX 1120
                +   +GN K  S SK +      P  L KRPL ++  +S                 
Sbjct: 224  ARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQTS------LALKKAKPSNV 277

Query: 1121 XXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXX 1300
                      + DD D+ P++QR+                      +             
Sbjct: 278  SASASVKREIKADDNDNTPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVKT 337

Query: 1301 XXXXXX-----LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQEE 1465
                       +KVPPGS GG+KWTTLEHNGVIFPPPYKPHG+KMLYNGQPVDLTPEQEE
Sbjct: 338  KMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEE 397

Query: 1466 VATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEKKK 1645
            VATMFAVMKDTDYA KP FIENF  DWR +LGKNHVIKKFELCDFTPIYEWHLREKEKKK
Sbjct: 398  VATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKK 457

Query: 1646 QMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 1825
            QMT+              +KYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI
Sbjct: 458  QMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 517

Query: 1826 RPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTL 2005
            +P DITINIG++ P+PECPIPGERWKEV+HDNTVTWLAFWNDPI+ K+FKYVFLAASS+L
Sbjct: 518  KPSDITINIGEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSL 577

Query: 2006 KGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNEKDD 2185
            KGQSDKEKYEK+R LK YI +IR NYTKDF SKD  KRQIAVATYLIDKLALRAGNEKD+
Sbjct: 578  KGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKDE 637

Query: 2186 DEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRT----- 2350
            DEADTVGCCTLKV+NV  +PPNKIQFDFLGKDSIRYFNTVEVE  VYKAI  FR      
Sbjct: 638  DEADTVGCCTLKVDNVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGISLL 697

Query: 2351 ---------------EXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNA 2485
                                      G DLFD LDT++LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 698  FSSSFSFVLNLRYLCPHTSGLVGKKPGKDLFDQLDTTRLNAHLKDLMPGLTAKVFRTYNA 757

Query: 2486 SITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALK 2665
            SITLD +L++ET+ G L EKIAVYQ+ANKEVAIICNHQRSVSKSHE+QM++LNE+ID LK
Sbjct: 758  SITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRLNERIDDLK 817

Query: 2666 AEREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDL 2845
            A+R+ELKV+LS+AKKGKP   D +GK ++NL+P+ +EKK+  I+ +IEKME++KK KEDL
Sbjct: 818  AQRDELKVDLSKAKKGKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDL 877

Query: 2846 KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL+AKF WAMDV+P FRF
Sbjct: 878  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFRF 930


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
            gi|241940222|gb|EES13367.1| hypothetical protein
            SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  964 bits (2491), Expect = 0.0
 Identities = 537/936 (57%), Positives = 632/936 (67%), Gaps = 27/936 (2%)
 Frame = +2

Query: 278  DDDDAPIVFKRTSTMSKPRQLSSDTKKLSS--QKNDGPVKRMASVQGPANGQ-----SSS 436
            DDDD P+ FKRTS   K  + +   ++ SS       P K+  S  G  N       + +
Sbjct: 15   DDDDVPLSFKRTSNSLKTARPTPSKQEGSSGGAARPTPSKQEGSSGGSGNPARPKPVAHN 74

Query: 437  SQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRS----SIKDVEKRLPIKSEAE 604
             QKN V   ++    K  S   ++  S   Q N S++H S    SI   + + P+  + E
Sbjct: 75   LQKNGVTGASRPVHMKPLSSTPNHRPSGSGQPNSSAQHSSKGNNSIDKSKLKRPLVKD-E 133

Query: 605  NYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXXXVPLSSKYPTASADVP 784
              D SDD+ P+  RR   +K  +    +    KA++S         PLS K         
Sbjct: 134  RSDDSDDEVPIGLRRKAEEK--KLKRVDTAVHKADDSDDDDK----PLSLKI-------- 179

Query: 785  KGSSVHSNVSVSIEV-QRMEVDIKKHSDDSEDDKPLASRLTLKS--SVGPSNKFTNSNEK 955
              SS  SN SVS  V QR+   +++  +DS+DDKPLASRL   +    G +    + +EK
Sbjct: 180  -NSSKMSNNSVSKPVLQRIAPKVEQPDEDSDDDKPLASRLPNNACPKSGGNVSEDSEDEK 238

Query: 956  LLATTLKE---NGNTKKDSVSKLVPPNM-----LNKRPLSDNRISSGPSIXXXXXXXXXX 1111
             LA    +   +GN K  S SK +  +      L KRPL DN   +  +I          
Sbjct: 239  PLAARFSKVAGSGNLKTASSSKGLNSDTNGQRSLGKRPL-DNSNQTSLAIKKAKPSNVSA 297

Query: 1112 XXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXX 1291
                         +TDD D+ P++QR+                                 
Sbjct: 298  SASVKREI-----KTDDNDNTPLAQRLKMGESSKGKPPAKSIVKKSPASAKDIKKLKGKG 352

Query: 1292 XXXXXXXXX-----LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPE 1456
                          ++VPPGS  G+KWTTLEHNGVIFPPPYKPHG+KMLYNGQPVDLTPE
Sbjct: 353  KLKKNMKNSQFSKTMRVPPGSGEGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPE 412

Query: 1457 QEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKE 1636
            QEEVATMFAVMKDTDYA KP FI+NF  DWR+ILGKNH+IKKFELCDFTPIYEWHLREKE
Sbjct: 413  QEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKE 472

Query: 1637 KKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 1816
            KKKQMT+              +KYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK
Sbjct: 473  KKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 532

Query: 1817 RRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAAS 1996
            RRI+P DITINIGK  P+PECPIPGE WKE++HDNTVTWLAFWNDPI+ K+FKYVFLAAS
Sbjct: 533  RRIQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVTWLAFWNDPISQKDFKYVFLAAS 592

Query: 1997 STLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNE 2176
            S+LKGQSDKEKYEK+R LK +I  IR NYTKDF +KD T+RQIAVATYLIDKLALRAGNE
Sbjct: 593  SSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNE 652

Query: 2177 KDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEX 2356
            KDDDEADTVGCCTLKV+NV  +PPNKIQFDFLGKDSIRYFNTVEVE  VYKAI  FR   
Sbjct: 653  KDDDEADTVGCCTLKVDNVTCMPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRA-- 710

Query: 2357 XXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNL 2536
                     G+ LFD +DT++LNAHLK+LMPGLTAKVFRTYNASITLD +L+ ET+ G L
Sbjct: 711  -----GKKPGEGLFDKIDTTRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTL 765

Query: 2537 PEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGK 2716
             EKIAVYQ+ANKEVAIICNHQRSVSKSHE+QM KLNEKID LK++ EELK +LS+AKKGK
Sbjct: 766  LEKIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEKIDELKSQMEELKADLSKAKKGK 825

Query: 2717 PPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRI 2896
            P   D +GK ++NL+PE +EKK+  ++ +I+KME+DKKIKEDLKTVALGTSKINYLDPRI
Sbjct: 826  PLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKEDLKTVALGTSKINYLDPRI 885

Query: 2897 TVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            TVAWCKRHEVPIEKIFNKSL+AKF WAMDV+P FRF
Sbjct: 886  TVAWCKRHEVPIEKIFNKSLIAKFGWAMDVDPDFRF 921


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  961 bits (2483), Expect = 0.0
 Identities = 487/719 (67%), Positives = 548/719 (76%), Gaps = 4/719 (0%)
 Frame = +2

Query: 860  SDDSEDDKPLASRLTLKSSVGPSNKFTNSNEKLLAT--TLKENGNTKKDSVSKLVPPNML 1033
            S+DSEDDKPL+++L+ +   G S+     +  +L +  T  ++ +  +D +  L+   + 
Sbjct: 16   SEDSEDDKPLSAKLSARLPKGNSHVLKGLSSPVLQSQKTKVDSSDDSEDEIPLLLKLQLK 75

Query: 1034 NKRPLSDNRISSGPSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQ--RIXXXXX 1207
            +++  S +++     +                         D  D +P+S   R+     
Sbjct: 76   SRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNL---SDDSEDEIPLSSKFRLKTVSS 132

Query: 1208 XXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIF 1387
                                                  KVPP S  GQKWTTLEHNGVIF
Sbjct: 133  DNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIF 192

Query: 1388 PPPYKPHGIKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKN 1567
            PPPYKPHG+KMLYNG+PVDLTPEQEEVATMFAVMKDTDYATKP+FIENFMNDWR  LGKN
Sbjct: 193  PPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKN 252

Query: 1568 HVIKKFELCDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVG 1747
            HVIKKFELCDFTPIYEWH +EKEKKKQMT+              DKYMWAVVDGVKEKVG
Sbjct: 253  HVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVG 312

Query: 1748 NFRVEPPGLFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTV 1927
            NFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK  P+PECPIPGERWKEVRHDNTV
Sbjct: 313  NFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTV 372

Query: 1928 TWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKD 2107
            TWLAFWNDPINPKEFKYVFLAASS+LKGQSDKEKYEKARLLKDYI NIRA YTKDFT+KD
Sbjct: 373  TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKD 432

Query: 2108 ATKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSI 2287
              KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV LVPPNK++FDFLGKDSI
Sbjct: 433  TMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSI 492

Query: 2288 RYFNTVEVELPVYKAIGDFRTEXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKV 2467
            RYFNTVEVELPVYKAIG F+T         S GDDLFD LDTSKLNAHLKELMPGLTAKV
Sbjct: 493  RYFNTVEVELPVYKAIGQFKT-------GKSGGDDLFDKLDTSKLNAHLKELMPGLTAKV 545

Query: 2468 FRTYNASITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNE 2647
            FRTYNASITLD+MLNRE +GG+  EKI +YQ ANKEVAIICNHQRSVSKSH+ QMS+L+E
Sbjct: 546  FRTYNASITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSE 605

Query: 2648 KIDALKAEREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDK 2827
            K+  L+   +ELK +L+RAKKGKPPLKD+DGK +KN++PEVLE+K+ Q + +IEKME D 
Sbjct: 606  KMRELQGVLDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDM 665

Query: 2828 KIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            K KEDLKTVALGTSKINYLDPRI+VAWCKR EVPIEKIFNKSLLAKF WAMDV+PSFRF
Sbjct: 666  KTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 724


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  959 bits (2480), Expect = 0.0
 Identities = 526/934 (56%), Positives = 626/934 (67%), Gaps = 25/934 (2%)
 Frame = +2

Query: 278  DDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVK--RMASVQGPANGQSSSSQKNK 451
            DDDD PI FKRTS  +K  + +      SS  N  PV+  +  S     NG + +S+   
Sbjct: 14   DDDDTPISFKRTSNSTKTARPTPSKHAGSSGGNGAPVRIPKPVSPNPQKNGATGASRPLH 73

Query: 452  VMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVE----KRLPIKSEAENYDYS 619
            + PP         S   ++  S   Q N  ++H S    ++    KR  +K E    D S
Sbjct: 74   MKPP---------SSSPNHRPSGSGQPNSLAQHSSKANSIDMSKLKRPLVKDERS--DDS 122

Query: 620  DDDKPLSSRRNGSQKAPQASSENKLAIKAENSXXXXXXXXVPLSSKYPTASADVPKGSSV 799
            DD+ P+  RR   +K  +    +    K ++S        + ++S            S +
Sbjct: 123  DDEVPIGLRRKVEEK--KLKGVDTRVQKTDDSDDDDKPLGLKINS------------SRM 168

Query: 800  HSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSN----KFTNSNEKLLAT 967
             SN      +QR    +++  +DS+DDKPLASRL   S+ GP +       + +EK LA 
Sbjct: 169  SSNRVNKPVLQRTVPKVEQPDEDSDDDKPLASRLP--SNAGPKSGGDVSEDSEDEKPLAA 226

Query: 968  TLKE---NGNTKKDSVSKLVPPNM-----LNKRPL-SDNRISSGPSIXXXXXXXXXXXXX 1120
               +   +GN K  S SK +  +      L KRPL S N+ SS                 
Sbjct: 227  RFSKVAGSGNPKIASSSKGLTSDTNGQQSLGKRPLDSSNQTSSA---------LKKAKPS 277

Query: 1121 XXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXX 1300
                     RE    D+ P++QR+                      +             
Sbjct: 278  NVSASAIVRREIKTDDNTPLAQRLKMGESSKGKSSAKSVFKKSPVSVKKDIKKMKGKGKL 337

Query: 1301 XXXXXX------LKVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQE 1462
                        +KVPPGS GG+KWTTLEHNGVIFPPPYKPHG+KMLYNG+PVDLTPEQE
Sbjct: 338  KKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPVDLTPEQE 397

Query: 1463 EVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEKK 1642
            EVATMFAVMKDTDYA KP FI+NF  DWR++LGKNH+IK FELCDFTPIYEWHLREKE+K
Sbjct: 398  EVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERK 457

Query: 1643 KQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 1822
            KQMT+              +KYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR
Sbjct: 458  KQMTTEEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 517

Query: 1823 IRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASST 2002
            I P DITINIGK  P+PECPIPGE WKEV+HDNTVTWLAFWNDPINPK+FKYVFLAASS+
Sbjct: 518  ILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSS 577

Query: 2003 LKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNEKD 2182
            LKGQSDKEKYEK+R LK +I  IR NYTKDF +KD T+RQIAVATYLIDKLALRAGNEKD
Sbjct: 578  LKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKD 637

Query: 2183 DDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEXXX 2362
            DDEADTVGCCTLKV+NV  +PPN+IQFDFLGKDSIRYFNTVEVE  VYKAI  FR     
Sbjct: 638  DDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRA---- 693

Query: 2363 XXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNLPE 2542
                   G DLFD +DTS+LNAHLK+LMPGLTAKVFRTYNASITLD +L+ ET+ G + E
Sbjct: 694  ---GKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLE 750

Query: 2543 KIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGKPP 2722
            KIAVYQ+ANKEVAIICN QRSVSKSHE+QM+++NEKID LK++ EELK +L++AKKGKP 
Sbjct: 751  KIAVYQRANKEVAIICNQQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPL 810

Query: 2723 LKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRITV 2902
              D++GK ++NL+PE ++KK+  ++ +IEKME+DK+IKEDLKTVALGTSKINYLDPRITV
Sbjct: 811  GYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITV 870

Query: 2903 AWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            AWCKRHEVPIEKIFNKSLLAKF WAMDV+P FRF
Sbjct: 871  AWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 904


>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
          Length = 926

 Score =  959 bits (2478), Expect = 0.0
 Identities = 536/958 (55%), Positives = 633/958 (66%), Gaps = 34/958 (3%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG 412
            M+ E    P L +  +DD+ P++FKR++  SK  Q +S+ KKLS QK+ G      S   
Sbjct: 1    MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 413  PANGQSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIK 592
            PANG+SSS+QK ++ P A+    KS         S P  SN S+          K  PI 
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSP-------LSSPKASNSSA----------KASPIT 103

Query: 593  SEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAE--NSXXXXXXXXVPLSSKYPT 766
            S   N   S      + ++N   K+  A  E K ++ A   NS         PL ++   
Sbjct: 104  SPGANSKLSASATSTAKQQN-HHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSG 162

Query: 767  ASADVPKGSSVHSNVSV--SIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSNK-- 934
             S+   KG S H+N     S  ++R  ++    S+DSED+KPL+ R   KSS+G S    
Sbjct: 163  CSS---KGKSNHANKEGGDSCSIRRPVIE---ESEDSEDEKPLSRRFPSKSSLGESTSKS 216

Query: 935  FTNSNEKLLATTLKENGNTKKDS--------VSKLVPPNM--LNKRPLSDNRISSG---- 1072
            + +  +K LAT +++NG+  +D         ++K  P  +  LN+  L   ++SS     
Sbjct: 217  YDSDEKKPLATKVQQNGSASRDGPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSI 276

Query: 1073 ----------PSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXX 1222
                      P                         + +D D+ PISQRI          
Sbjct: 277  SNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKS 336

Query: 1223 XXXXXXXXXXXX--IXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPP 1396
                          +                    KVPPGS  GQKWTTL HNGV+F PP
Sbjct: 337  SAPVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFLPP 396

Query: 1397 YKPHGIKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVI 1576
            YKPHG+KMLY  QP+ LTPEQEEVATMFAVM DTDY TKP+F ENF +DW+++LGKNH +
Sbjct: 397  YKPHGVKMLYKXQPLTLTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGKNHTV 456

Query: 1577 KKFELCDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFR 1756
            +  E CDF PIYEWH +EKEK+KQMT+              +KYMWA+VDGVKEKVGNFR
Sbjct: 457  QNLEDCDFGPIYEWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMWAIVDGVKEKVGNFR 516

Query: 1757 VEPPGLFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWL 1936
            VEPPGLFRGRGEHPKMGKLK+RIRPRDITINIGK+ PIPECPIPGERWKEVR+DNTVTWL
Sbjct: 517  VEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWL 576

Query: 1937 AFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFT-SKDAT 2113
            AFWNDPIN KE KYVFLAASSTLKGQSDKEKYEKARLLKDYIH IRA YTKDFT +KD  
Sbjct: 577  AFWNDPINQKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPM 636

Query: 2114 KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRY 2293
            K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV  VPPN ++ DF+GKDSIRY
Sbjct: 637  KKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRY 696

Query: 2294 FNTVEVELPVYKAIGDFRTEXXXXXXXXSEG-DDLFDLLDTSKLNAHLKELMPGLTAKVF 2470
             N V+VE  V+KAI  FR+          EG  DLFD LDTSKLNAHLKELMPGLTAKVF
Sbjct: 697  QNEVQVEPAVFKAIQQFRS--------GKEGCADLFDRLDTSKLNAHLKELMPGLTAKVF 748

Query: 2471 RTYNASITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEK 2650
            RTYNASITLDDML++ETKGG + EK+ VYQ ANKEVAIICNHQR+VSKSH  QMS+LNEK
Sbjct: 749  RTYNASITLDDMLSKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEK 808

Query: 2651 IDALKAEREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKK 2830
            ID LK   EELK +LSRAKKGKPP K ADG+ ++NL+PE LE+K+ Q +A+IEKME DKK
Sbjct: 809  IDELKTALEELKTDLSRAKKGKPPAKGADGEPKRNLNPESLERKIAQTNAKIEKMERDKK 868

Query: 2831 IKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
             KEDLK VAL TSKI+YLDPRITVAWCKRHEVPIEKIFNKSLLAKF W+MDV+PSFRF
Sbjct: 869  TKEDLKAVALSTSKISYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 926


>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
          Length = 920

 Score =  956 bits (2470), Expect = 0.0
 Identities = 537/951 (56%), Positives = 629/951 (66%), Gaps = 34/951 (3%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG 412
            M+ E      L +  +DD+ P++FKR++  SK  Q +S+ KKLS QK+ G      S   
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 413  PANGQSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIK 592
            PANG++SS+QK ++ P AK    KS         S P  SN S+          K  PI 
Sbjct: 61   PANGENSSAQKGRIQPSAKTPPVKSP-------LSSPKASNSSA----------KASPIT 103

Query: 593  SEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAE--NSXXXXXXXXVPLSSKYPT 766
            S   N   S      + ++N   K+  A  E K ++ A   NS         PLS++   
Sbjct: 104  SPGANSKPSASATSTAKQQN-HHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFG 162

Query: 767  ASADVPKGSSVHSNVSV--SIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSNK-- 934
             S+   KG S H+N     S  ++R  ++    S+DSED+KPL+ R T KSS+G S    
Sbjct: 163  CSS---KGKSNHANKEGGDSCSIRRPVIE---ESEDSEDEKPLSRRFTSKSSLGESTSKS 216

Query: 935  FTNSNEKLLATTLKENGNTKKDS-------VSKLVPPN---MLNKRPLSDNRISSG---- 1072
            + +  +K LA  ++ NG+  +DS       +S   PP     LN+  L   ++SS     
Sbjct: 217  YDSDEKKPLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSI 276

Query: 1073 ----------PSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXX 1222
                      P                         + +D D++PISQRI          
Sbjct: 277  SNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKS 336

Query: 1223 XXXXXXXXXXXX--IXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPP 1396
                          +                    KVPPGS  GQKWTTL HNGVIFPPP
Sbjct: 337  SAPVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPP 396

Query: 1397 YKPHGIKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVI 1576
            YKPHG+KMLY  QP+ LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGKNH I
Sbjct: 397  YKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTI 456

Query: 1577 KKFELCDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFR 1756
            +  E CDF PIYEWH +EKEKKKQMT+              +KYMWA+VDGVKEKVGNFR
Sbjct: 457  QNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFR 516

Query: 1757 VEPPGLFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWL 1936
            VEPPGLFRGRGEHPKMGKLK+RIRPRDITINIGK+ PIPECPIPGERWKEVR+DNTVTWL
Sbjct: 517  VEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWL 576

Query: 1937 AFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFT-SKDAT 2113
            A+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIH IRA YTKDFT +KD  
Sbjct: 577  AYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPM 636

Query: 2114 KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRY 2293
            K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV  VPPN ++FDFLGKDSIRY
Sbjct: 637  KKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRY 696

Query: 2294 FNTVEVELPVYKAIGDFRTEXXXXXXXXSEG-DDLFDLLDTSKLNAHLKELMPGLTAKVF 2470
             N V+VE  V+KAI  FR+          EG +DLFD LDTSKLNAHLKELMPGLTAKVF
Sbjct: 697  QNEVQVEPAVFKAIHQFRS--------GKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVF 748

Query: 2471 RTYNASITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEK 2650
            RTYNASITLDDML+++T GG + EK+ VYQ ANKEVAIICNHQR+VSKSH  QMS+LNEK
Sbjct: 749  RTYNASITLDDMLSKKTNGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEK 808

Query: 2651 IDALKAEREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKK 2830
            ID LK   EELK +LSRAKKGKP  K ADGK ++NL+PE LE+K+ Q +A+IEKME DK+
Sbjct: 809  IDELKTALEELKTDLSRAKKGKPLSKGADGKPKRNLNPEALERKIAQTNAKIEKMERDKE 868

Query: 2831 IKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMD 2983
             KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF WAM+
Sbjct: 869  TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMN 919


>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
          Length = 920

 Score =  955 bits (2469), Expect = 0.0
 Identities = 534/970 (55%), Positives = 630/970 (64%), Gaps = 53/970 (5%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG 412
            M+ E      L +  +DD+ P++FKR++  SK  Q +S+ KKLS Q++ G      S   
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQRHVGQSAVHTSDVR 60

Query: 413  PANGQSSSSQKNKVMPPAKM--------------STEKSTSMRSSYLASKPVQSNISS-- 544
            PANG++SS+QK ++ P AK               S+ K++ + S+   SKP  S  S+  
Sbjct: 61   PANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSAGANSKPSASATSTAK 120

Query: 545  ---EHRSSIKDVEKR--LPIKSEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAE 709
                H+SS   +E +  +P      N + SDD+KPLS+R  G                  
Sbjct: 121  QQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSS--------------- 165

Query: 710  NSXXXXXXXXVPLSSKYPTASADVPKGSSVHSNVSV--SIEVQRMEVDIKKHSDDSEDDK 883
                                     KG S H+N     S  ++R  ++    S+DSED+K
Sbjct: 166  -------------------------KGKSNHANKEGGDSCSIRRPVIE---ESEDSEDEK 197

Query: 884  PLASRLTLKSSVGPSNK--FTNSNEKLLATTLKENGNTKKDS-------VSKLVPPN--- 1027
            PL+ R T KSS+G S    + +  +K LA  ++ NG+  +DS       +S   PP    
Sbjct: 198  PLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVK 257

Query: 1028 MLNKRPLSDNRISSG--------------PSIXXXXXXXXXXXXXXXXXXXXXXRETDDT 1165
             LN+  L   ++SS               P                         + +D 
Sbjct: 258  SLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDD 317

Query: 1166 DHMPISQRIXXXXXXXXXXXXXXXXXXXXXX--IXXXXXXXXXXXXXXXXXXXLKVPPGS 1339
            D++PISQRI                        +                    KVPPGS
Sbjct: 318  DNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGS 377

Query: 1340 DGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPK 1519
              GQKWTTL HNGVIFPPPYKPHG+KMLY  QP+ LTPEQEEVATMFAVM DTDY  KP+
Sbjct: 378  GEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPR 437

Query: 1520 FIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXX 1699
            F ENF +DW+++LGKNH I+  E CDF PIYEWH +EKEKKKQMT+              
Sbjct: 438  FKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQE 497

Query: 1700 DKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPEC 1879
            +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRPRDITINIGK+ PIPEC
Sbjct: 498  EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPEC 557

Query: 1880 PIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDY 2059
            PIPGERWKEVR+DNTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDY
Sbjct: 558  PIPGERWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDY 617

Query: 2060 IHNIRANYTKDFT-SKDATKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVM 2236
            IH IRA YTKDFT +KD  K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV 
Sbjct: 618  IHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677

Query: 2237 LVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEXXXXXXXXSEG-DDLFDLLDT 2413
             VPPN ++FDFLGKDSIRY N V+VE  V+KAI  FR+          EG +DLFD LDT
Sbjct: 678  PVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRS--------GKEGSEDLFDRLDT 729

Query: 2414 SKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICN 2593
            SKLNAHLKELMPGLTAKVFRTYNASITLDDML+++T GG + EK+ VYQ ANKEVAIICN
Sbjct: 730  SKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKKTNGGEVAEKVVVYQHANKEVAIICN 789

Query: 2594 HQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVL 2773
            HQR+VSKSH  QMS+LNEKID LK   EELK +LSRAKKGKP  K ADGK ++NL+PE L
Sbjct: 790  HQRTVSKSHSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPLSKGADGKPKRNLNPEAL 849

Query: 2774 EKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 2953
            E+K+ Q +A+IEKME DK+ KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS
Sbjct: 850  ERKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 909

Query: 2954 LLAKFTWAMD 2983
            LLAKF WAM+
Sbjct: 910  LLAKFAWAMN 919


>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
            tuberosum]
          Length = 905

 Score =  955 bits (2468), Expect = 0.0
 Identities = 534/939 (56%), Positives = 637/939 (67%), Gaps = 15/939 (1%)
 Frame = +2

Query: 233  MSAEGGAKP-FLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQ 409
            M+ E  AK   + D  DDDD P+VFKR+ST SK  Q +S     SSQK DG   R     
Sbjct: 1    MAVEAFAKTNLMEDIDDDDDMPLVFKRSSTTSKQNQSNS-----SSQKQDGRSGRQVPDV 55

Query: 410  GPANGQSSSSQKNKVMPPAKMSTEKS--TSMRSSYLASKPVQSNISSEHRSSIKDVEKRL 583
               NGQSSS+ K K    +K S   S  TS +++ L+S+   ++ +   R+S     +  
Sbjct: 56   RSPNGQSSSTHKVKTAASSKASPAVSPLTSPKAAPLSSR---TSPAPNFRTSPAPNSRTP 112

Query: 584  PIKSEAENYDYSDDDKPLSSRRNGSQKAPQASS----ENKLAIKAE---NSXXXXXXXXV 742
            P  +   +   + + +P SS  N ++   Q S+    E+K AI+ +   N          
Sbjct: 113  PAPNSRTSP--APNSRPSSSAGNQAKNVNQQSNIAPKESKQAIEPKSEPNDEAEDSEDDK 170

Query: 743  PLSSKYPTASADVPKGSSVHSN--VSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSS 916
            PLS++ P+    + K +S+H+N  +  S  VQ+     K   +DS+D+ PLASR  +KSS
Sbjct: 171  PLSARVPSG---LSKSNSIHANNVLGTSTSVQKSRPPKK---EDSDDEIPLASRFQMKSS 224

Query: 917  VGPS-NKFTNSNEKLLATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXXX 1093
             G S +KF++S E  +   +++NG         L    +L+KRP  +  +     +    
Sbjct: 225  AGASTSKFSSSEE--VKPKIRQNG---------LPSATVLSKRPPGEVSLLLRLQLKSLD 273

Query: 1094 XXXXXXXXXXXXXXXXXXRET-DDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXX 1270
                              ++T DD D +P+SQRI                      +   
Sbjct: 274  FLMHLHLFLVSNXSVKTEKKTEDDDDEVPLSQRIKKAVASASASASKVSSVKKATKVVSS 333

Query: 1271 XXXXXXXXXXXXXXXXL-KVPPGSDGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDL 1447
                              K+ P S  GQKWTTLEHNGVIFPPPYKPHG+KMLY G+PVDL
Sbjct: 334  SMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDL 393

Query: 1448 TPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLR 1627
            TPEQEEVATM+AVM DT+Y TK +F ENFMNDWR+ILGKNHVI+K E C+FTPIYEWH  
Sbjct: 394  TPEQEEVATMYAVMLDTEYLTKQQFKENFMNDWRKILGKNHVIQKLEECNFTPIYEWHQS 453

Query: 1628 EKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 1807
            EKEKKKQM+S              +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMG
Sbjct: 454  EKEKKKQMSSEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 513

Query: 1808 KLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFL 1987
            KLKRRIRP DITINIGK VP+PECPIPG+RWKEVRHDNTVTWLAFWNDPINP+EFKYVFL
Sbjct: 514  KLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFL 573

Query: 1988 AASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRA 2167
            AASS+LKGQSDKEKYEKAR LKDYI  IR+ YTKDFTSKD  KRQIAVATYLIDKLALRA
Sbjct: 574  AASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFTSKDPVKRQIAVATYLIDKLALRA 633

Query: 2168 GNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFR 2347
            GNEKDDDEADTVGCCTLKVENV  VPPN ++FDFLGKDSIRY N V V  PV+KAI  FR
Sbjct: 634  GNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFR 693

Query: 2348 TEXXXXXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKG 2527
            +           GDDLFD LDTSKLNAHLKELMPGLTAKVFRTYNAS TL+  L + T+G
Sbjct: 694  S-------GKKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLTKLTQG 746

Query: 2528 GNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAK 2707
            G L +K+AVY  ANKEVAIICNHQR+VSKSH  Q+S+LNEKID LKA  EE KV+L+RAK
Sbjct: 747  GELADKVAVYNVANKEVAIICNHQRTVSKSHSVQISRLNEKIDELKAILEEFKVDLARAK 806

Query: 2708 KGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLD 2887
            KGKPP+K ADGK+++NL+PE L+KK+ Q + +I+ +E   + KE+LKTVALGTSKINYLD
Sbjct: 807  KGKPPVKGADGKAKRNLTPEALQKKIDQTNVKIDNIERQIETKEELKTVALGTSKINYLD 866

Query: 2888 PRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            PRITVAWCKRHEVPIEK+FNKSLLAKF WAMDVEPSF F
Sbjct: 867  PRITVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF 905


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  952 bits (2461), Expect = 0.0
 Identities = 529/935 (56%), Positives = 628/935 (67%), Gaps = 11/935 (1%)
 Frame = +2

Query: 233  MSAEGGAKPF-LHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQ 409
            M+ E  +KP  ++D  DD+D P VFKR +  S+    + + K+ SS              
Sbjct: 1    MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSST------------ 48

Query: 410  GPANGQSSSSQKNKV-MPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLP 586
              ANGQ+S++ K+K  +  +K+   KS         S    S   S  RS +K    R P
Sbjct: 49   --ANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKS-PVRSP 105

Query: 587  IKSEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAEN---SXXXXXXXXVPLSSK 757
            +KS   N   S +  PL  R   S +    +   K  IK  N   S         PLS++
Sbjct: 106  VKSPVAN---SKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSAR 162

Query: 758  YPTASADVPKGSSVHSNVSVSIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPSN-K 934
                S +V +G    S    +I     EV++K   +DS+D+ PL+SR   KS+ G S  K
Sbjct: 163  LKGNSKNVNQGIGA-SKADAAIS----EVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGAK 216

Query: 935  FTNSNEKL-LATTLKENGNTKKDSVSKLVPPNMLNKRPLSDNRISSGPSIXXXXXXXXXX 1111
              +S+EK  LA+ +++NG+T +++  K    ++  KRPL     S   S           
Sbjct: 217  PIDSDEKKPLASKVQQNGSTSRETQQK--SSSVPVKRPLQKASSSGASSAKKPKVSDTSK 274

Query: 1112 XXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXX 1291
                        ++ DD DH+PISQR+                                 
Sbjct: 275  EVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTK 334

Query: 1292 XXXXXXXXX--LKVPPGS-DGGQKWTTLEHNGVIFPPPYKPHGIKMLYNGQPVDLTPEQE 1462
                        K+ PGS DG +KWTTL HNGVIFPPPY PHG+KMLY G+ V+LTPEQE
Sbjct: 335  KVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQE 394

Query: 1463 EVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVIKKFELCDFTPIYEWHLREKEKK 1642
            EVATMFAVM DTDY  KPKF ENF NDWR++LGKNHVI+  E CDF PIY+WH  +KEKK
Sbjct: 395  EVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKK 454

Query: 1643 KQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 1822
            KQM+S              +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 455  KQMSSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 514

Query: 1823 IRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASST 2002
            I+P DITINIGK+VPIPECPIPGE WKEV+HDNTVTWLAFWNDPINPKEFKYVFLAASS+
Sbjct: 515  IQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 574

Query: 2003 LKGQSDKEKYEKARLLKDYIHNIRANYTKDFTSKDATKRQIAVATYLIDKLALRAGNEKD 2182
            LKGQSDKEKYEKAR LKDYIH+IRA YTKDF S+D T+RQIAVATYLIDKLALRAGNEKD
Sbjct: 575  LKGQSDKEKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD 634

Query: 2183 DDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRYFNTVEVELPVYKAIGDFRTEXXX 2362
            DDEADTVGCCTLKV NV  +PPNK++FDFLGKDSI+Y NTVEVELPVYKAIG F+T    
Sbjct: 635  DDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT---- 690

Query: 2363 XXXXXSEGDDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLNRETKGGNLPE 2542
                  + DDLFD LDT+KLNAHLKELMPGLTAKVFRTYNASITLD MLN+ T  G++  
Sbjct: 691  ---GKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV 747

Query: 2543 KIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEKIDALKAEREELKVNLSRAKKGKPP 2722
            KI VYQ+ANKEVAIICNHQR+VSK+H  QMS+L EKI+ LK   ++L+V+L RAKKGKPP
Sbjct: 748  KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP 807

Query: 2723 L-KDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKKIKEDLKTVALGTSKINYLDPRIT 2899
            L KD+DGK ++NL+PE LE+K+ Q +A+IEKME D K KEDLKTVALGTSKINYLDPRIT
Sbjct: 808  LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRIT 867

Query: 2900 VAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
            VAWCKRHEVPIEKIFNKSLLAKF WAMDV+P FRF
Sbjct: 868  VAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 902


>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
          Length = 926

 Score =  952 bits (2460), Expect = 0.0
 Identities = 535/958 (55%), Positives = 633/958 (66%), Gaps = 34/958 (3%)
 Frame = +2

Query: 233  MSAEGGAKPFLHDSSDDDDAPIVFKRTSTMSKPRQLSSDTKKLSSQKNDGPVKRMASVQG 412
            M+ E    P L +  +DD+ P++FKR++  SK  Q +S+ KKLS QK+ G      S   
Sbjct: 1    MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 413  PANGQSSSSQKNKVMPPAKMSTEKSTSMRSSYLASKPVQSNISSEHRSSIKDVEKRLPIK 592
            PANG+SSS+QK ++ P A+    KS         S P  SN S+          K  PI 
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSP-------LSSPKASNSSA----------KASPIT 103

Query: 593  SEAENYDYSDDDKPLSSRRNGSQKAPQASSENKLAIKAE--NSXXXXXXXXVPLSSKYPT 766
            S   N   S      + ++N   K+  A  E K ++ A   NS         PL ++   
Sbjct: 104  SPGANSKLSASATSTAKQQN-HHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSG 162

Query: 767  ASADVPKGSSVHSNVSV--SIEVQRMEVDIKKHSDDSEDDKPLASRLTLKSSVGPS-NKF 937
             S+   KG S H+N     S  ++R  ++    S+DSED+KPL+ R   KSS+G S +K 
Sbjct: 163  CSS---KGKSNHANKEGGDSCSIRRPVIE---ESEDSEDEKPLSRRFPSKSSLGESTSKS 216

Query: 938  TNSNEKL-LATTLKENGNTKKD-------SVSKLVPPN---MLNKRPLSDNRISSG---- 1072
             +S+EK  LA  +++NG+  +D       S+S    P     LN+  L   ++SS     
Sbjct: 217  HDSDEKKPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSTITSI 276

Query: 1073 ----------PSIXXXXXXXXXXXXXXXXXXXXXXRETDDTDHMPISQRIXXXXXXXXXX 1222
                      P                         + +D D+ PISQRI          
Sbjct: 277  SNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKS 336

Query: 1223 XXXXXXXXXXXX--IXXXXXXXXXXXXXXXXXXXLKVPPGSDGGQKWTTLEHNGVIFPPP 1396
                          +                    KVPPGS  GQKWTTL HNGV+FPPP
Sbjct: 337  SAPVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPP 396

Query: 1397 YKPHGIKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGKNHVI 1576
            YKPHG+KMLY  QP+ LTPEQEEVATMFA M DTDY  KP+F ENF +DW++ILGKNH I
Sbjct: 397  YKPHGVKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGKNHTI 456

Query: 1577 KKFELCDFTPIYEWHLREKEKKKQMTSXXXXXXXXXXXXXXDKYMWAVVDGVKEKVGNFR 1756
            +  E CDF PIYEWH +EKEKKKQMT+              +KYMWA+VDGVKEKVGNFR
Sbjct: 457  QNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQLEEKYMWAIVDGVKEKVGNFR 516

Query: 1757 VEPPGLFRGRGEHPKMGKLKRRIRPRDITINIGKNVPIPECPIPGERWKEVRHDNTVTWL 1936
            VEPPGLFRGRGEHPK+GKLK+RIRPRDITINIGK+ PIPECPIPGERWKEVR+DNTVTWL
Sbjct: 517  VEPPGLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWL 576

Query: 1937 AFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHNIRANYTKDFT-SKDAT 2113
            A+WNDP+N KE KYVFLAASSTLKGQSDKEKYEKARLLKDYIH IRA YTKDFT +KD  
Sbjct: 577  AYWNDPVNLKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPM 636

Query: 2114 KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVMLVPPNKIQFDFLGKDSIRY 2293
            K+Q+AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV  VPPN ++ DF+GKDSIRY
Sbjct: 637  KKQVAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKIDFIGKDSIRY 696

Query: 2294 FNTVEVELPVYKAIGDFRTEXXXXXXXXSEG-DDLFDLLDTSKLNAHLKELMPGLTAKVF 2470
             N V+VE  V+KAI  FR+          EG +DLFD LDTSKLNAHLKELMPGLTAKVF
Sbjct: 697  QNEVQVEPAVFKAIQQFRS--------GKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVF 748

Query: 2471 RTYNASITLDDMLNRETKGGNLPEKIAVYQKANKEVAIICNHQRSVSKSHENQMSKLNEK 2650
            RTYNASITLDDML++ETKGG + EK+ VYQ+ANKEVAIICNHQR+VSKSH  QMS+LNEK
Sbjct: 749  RTYNASITLDDMLSKETKGGKVAEKVGVYQRANKEVAIICNHQRTVSKSHSAQMSRLNEK 808

Query: 2651 IDALKAEREELKVNLSRAKKGKPPLKDADGKSRKNLSPEVLEKKLLQIDARIEKMELDKK 2830
            ID LK   EELK +LSRAKKGKPP K  DG+ ++NL+PE LE+K+ Q +A+IEKME DKK
Sbjct: 809  IDELKTALEELKTDLSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKK 868

Query: 2831 IKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVEPSFRF 3004
             KEDLK VAL TSKI+YLDPRITVAWCKR EVPIEK+FNKSLLAKF WAMDV+PSFRF
Sbjct: 869  TKEDLKAVALSTSKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMDVDPSFRF 926