BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00001405
         (2921 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]             502   e-149
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   489   e-146
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   480   e-145
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   491   e-145
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe...   481   e-142
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      472   e-141
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   480   e-141
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   470   e-141
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   474   e-140
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   466   e-140
gb|ESW03465.1| hypothetical protein PHAVU_011G016400g [Phaseolus...   474   e-140
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   504   e-140
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   504   e-140
ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ...   462   e-137
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali...   457   e-136
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      469   e-136
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   456   e-136
ref|NP_001185314.1| RNA polymerase sigma subunit 1 [Arabidopsis ...   456   e-136
gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]             454   e-136
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   453   e-135

>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  502 bits (1293), Expect(2) = e-149
 Identities = 266/381 (69%), Positives = 310/381 (81%), Gaps = 6/381 (1%)
 Frame = +2

Query: 1796 GATDIVAES-----SLEAIVLLQKSMLEKQWKLSFDG-IATEVASGESCRKIEVTRSGVS 1957
            G+ D+  ES     S+EA++LLQKSMLEKQW LSF+  + TE  S +  +KI VT SGVS
Sbjct: 94   GSNDLEVESYDLDYSVEALLLLQKSMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVS 153

Query: 1958 ARQRRAKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVV 2137
            ARQRR   ++K L QN S++  N +KQ RS +SPE LQSR KGYV+G VS++LL+HAEVV
Sbjct: 154  ARQRRFNTKRKILIQNKSIIQPN-AKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVV 212

Query: 2138 SLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMS 2317
             LSKKIKAG              G EPSD+QLA+SL+ISRAEL + L+E SLAREKLAMS
Sbjct: 213  RLSKKIKAGLSLEEHRLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMS 272

Query: 2318 NIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRA 2497
            N+RLVMSIAQ+YDN+GAEM+DL+QGGLI LLRGIEKFDSSKGY+ISTYVYWWIRQGVSRA
Sbjct: 273  NVRLVMSIAQRYDNMGAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRA 332

Query: 2498 LVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVK 2677
            LVENSRTLRLP HLHERL  IRNAKIRLE KGI P++D IAESLNMSQKKVRNATEAV K
Sbjct: 333  LVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSK 392

Query: 2678 VISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKRERE 2857
            V SLD++AFP+LNGLPGET HSYI DN +EN PW G +EW+LKDEVN+L+  TLG+RERE
Sbjct: 393  VFSLDRDAFPSLNGLPGETHHSYIADNHVENIPWHGVDEWALKDEVNRLITITLGERERE 452

Query: 2858 IIRLYYGLDEECHTWEDISRQ 2920
            IIRLYYGLD+E  TWEDIS++
Sbjct: 453  IIRLYYGLDKESLTWEDISKR 473



 Score = 57.0 bits (136), Expect(2) = e-149
 Identities = 35/66 (53%), Positives = 45/66 (68%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MMATAAVIGL+ GKRLL SS  Y SD+ EK   A ++      + STKS+I+A KSS+  
Sbjct: 1    MMATAAVIGLTTGKRLLSSSFSY-SDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCS 59

Query: 1740 PNLPSN 1757
             +LPS+
Sbjct: 60   QSLPSS 65


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  489 bits (1258), Expect(2) = e-146
 Identities = 253/370 (68%), Positives = 299/370 (80%), Gaps = 2/370 (0%)
 Frame = +2

Query: 1817 ESSLEAIVLLQKSMLEKQWKLSFD--GIATEVASGESCRKIEVTRSGVSARQRRAKCRKK 1990
            ESSLEA++LLQKSMLEKQW LSFD  G +T++   ESC+K+ V  SG SARQRR   R+ 
Sbjct: 95   ESSLEALILLQKSMLEKQWNLSFDQAGTSTDLCE-ESCKKLGVISSGASARQRRNSLRRP 153

Query: 1991 YLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSKKIKAGXX 2170
             L+Q A  V   + KQ    VSPE LQ  F+GYV+G  ++ LL+HAEVV LS KI+AG  
Sbjct: 154  -LNQRAGTVLVRRKKQATPIVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLS 212

Query: 2171 XXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRLVMSIAQK 2350
                        GF+PSD+ LASSL+ISR+ELH+ L+E SLA+EKLAMSNIRLVMSIAQK
Sbjct: 213  LEEHKSRLKEKLGFDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQK 272

Query: 2351 YDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVENSRTLRLP 2530
            YDN+G EMADL+QGGLI LLRGIEKFDSSKG++ISTYVYWWIRQGVSRA+VENSRTLRLP
Sbjct: 273  YDNMGIEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLP 332

Query: 2531 VHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISLDKEAFPT 2710
             HLHERLS IRNAKIRL+ +G+ PS+  IA+SLNMS+KKV+NATEA+ KV SLD+EAFPT
Sbjct: 333  THLHERLSLIRNAKIRLKEQGLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPT 392

Query: 2711 LNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRLYYGLDEE 2890
            LNGLPGETLHSYI DN L N+PW G +EW LK EVNKL+ +TL +RE++IIRLYYGLD+E
Sbjct: 393  LNGLPGETLHSYIADNNLMNNPWHGVDEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKE 452

Query: 2891 CHTWEDISRQ 2920
            CHTWEDISR+
Sbjct: 453  CHTWEDISRK 462



 Score = 60.1 bits (144), Expect(2) = e-146
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIG+S GKRLLRSS F +SD+ E+  P  +    Q  ++S KS I++ KS  FGP
Sbjct: 1    MATAAVIGISTGKRLLRSS-FLASDI-ERVIPIYDFGATQFPAVSHKSFIVSKKSPGFGP 58

Query: 1743 NLPSN 1757
            N PSN
Sbjct: 59   NSPSN 63


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
            gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  480 bits (1235), Expect(2) = e-145
 Identities = 251/393 (63%), Positives = 303/393 (77%), Gaps = 1/393 (0%)
 Frame = +2

Query: 1745 SPIKQXXXXXXVWFQEVGATDIVAESSLEAIVLLQKSMLEKQWKLSFDG-IATEVASGES 1921
            SPI +       W  E    +   + ++EA++LLQKSMLEKQW LSF+  ++T+    ++
Sbjct: 85   SPIAEPWHNTTSWEDE----ETELKYTVEALLLLQKSMLEKQWSLSFEQTVSTDTPKEKT 140

Query: 1922 CRKIEVTRSGVSARQRRAKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGR 2101
             +K+ VT SGVSARQRR   ++K   ++  +     SKQ R  +SPE LQ+R KGYV+G 
Sbjct: 141  LKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGL 200

Query: 2102 VSEDLLTHAEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILM 2281
            +SE+LL+HAEVV LSKKIK G              G EPS+ QLA SL+ISRAEL + +M
Sbjct: 201  LSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISRAELRSRMM 260

Query: 2282 EFSLAREKLAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTY 2461
            E SLAREKLAMSN+RLVMSIAQ+YDN+GAEMADLVQGGLI LLRGIEKFDSSKG++ISTY
Sbjct: 261  ESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320

Query: 2462 VYWWIRQGVSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQ 2641
            VYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK++L+ KGI PSLD IAESLNMS+
Sbjct: 321  VYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSK 380

Query: 2642 KKVRNATEAVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNK 2821
            KKV+NATEA+ KV SLD+EAFP+LNGLPGET HSYI DN LEN+PW G + W LK EVN+
Sbjct: 381  KKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKVEVNQ 440

Query: 2822 LLHATLGKREREIIRLYYGLDEECHTWEDISRQ 2920
            L++ TLG REREIIRLY+GLD EC TWE+IS++
Sbjct: 441  LINMTLGDREREIIRLYHGLDNECLTWEEISKR 473



 Score = 64.3 bits (155), Expect(2) = e-145
 Identities = 35/66 (53%), Positives = 46/66 (69%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MMATAA+IGL A KRLL SS +YS D  EK   A ++RL Q+   S+KSV++A  S++F 
Sbjct: 1    MMATAAIIGLGAAKRLLNSSSYYS-DFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFS 59

Query: 1740 PNLPSN 1757
            P  PS+
Sbjct: 60   PRYPSS 65


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  491 bits (1264), Expect(2) = e-145
 Identities = 256/387 (66%), Positives = 307/387 (79%), Gaps = 7/387 (1%)
 Frame = +2

Query: 1781 WFQEVGATDIVAESS-----LEAIVLLQKSMLEKQWKLSFDG-IATEVAS-GESCRKIEV 1939
            WFQ   + D+  ESS     +EA++LLQKSMLEKQW LSF+  + TE +S G+ CRK+ V
Sbjct: 88   WFQSYNSNDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLTENSSKGKKCRKVAV 147

Query: 1940 TRSGVSARQRRAKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLL 2119
            T SGVSARQRR   ++K      + +    + Q +S++SPE LQ R KGYV+G VSE+LL
Sbjct: 148  TCSGVSARQRRMNTKRK------TAIKTCGAMQLKSKISPELLQHRLKGYVKGLVSEELL 201

Query: 2120 THAEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAR 2299
            +HAEVV+LS+KIK G              G EPSD Q+A+SL+ISR EL A ++E SLAR
Sbjct: 202  SHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAR 261

Query: 2300 EKLAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIR 2479
            EKLAMSN+RLVMSIAQKYDNLGAEM DLVQGGLI LLRGIEKFDSSKG++ISTYVYWWIR
Sbjct: 262  EKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 321

Query: 2480 QGVSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNA 2659
            QGVSRALVENSRTLRLP HLHERLS IRNAK RLE +GI P++D IA+ LNMSQKKVRNA
Sbjct: 322  QGVSRALVENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNA 381

Query: 2660 TEAVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATL 2839
            TEA+ K+ISLD+EAFP+LNGL GET HSYI DN++EN PW G +EW+LKDEVN+L++ TL
Sbjct: 382  TEAISKIISLDREAFPSLNGLQGETHHSYIADNRVENIPWNGVDEWALKDEVNRLINVTL 441

Query: 2840 GKREREIIRLYYGLDEECHTWEDISRQ 2920
             +REREIIRLYYGL++EC TWEDIS++
Sbjct: 442  VEREREIIRLYYGLEKECLTWEDISKR 468



 Score = 52.8 bits (125), Expect(2) = e-145
 Identities = 32/65 (49%), Positives = 41/65 (63%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGLS GKRLL SS  Y SD+ EK     +        + TKS+I+A KSS++ P
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHY-SDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTP 59

Query: 1743 NLPSN 1757
              P++
Sbjct: 60   TFPAS 64


>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  481 bits (1239), Expect(2) = e-142
 Identities = 254/387 (65%), Positives = 306/387 (79%), Gaps = 7/387 (1%)
 Frame = +2

Query: 1781 WFQEVGATDIVAESS-----LEAIVLLQKSMLEKQWKLSFDG-IATEVASGESCRKIEVT 1942
            WFQE+   D+  ESS     +EA++LLQKSMLEKQW LSF+  +  +  S  + +KI VT
Sbjct: 93   WFQELN--DLEEESSDLEYSVEALLLLQKSMLEKQWNLSFEKKVLRDSTSKTTDKKIPVT 150

Query: 1943 RSGVSARQRR-AKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLL 2119
             SGVSARQRR    ++K  +++  V+  + +K  R+ VSPE LQ+  KGYV+G +SEDLL
Sbjct: 151  CSGVSARQRRMTSTKRKTFNKSTCVMHPSTNKPLRAIVSPELLQNHVKGYVKGVLSEDLL 210

Query: 2120 THAEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAR 2299
            TH EVV LSKKIK G              G EPSD+QLA+SLRISRA+L + L+E  LAR
Sbjct: 211  THTEVVRLSKKIKVGLSVEEHKSRLKERLGCEPSDEQLATSLRISRAQLQSKLIECKLAR 270

Query: 2300 EKLAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIR 2479
            EKLAMSN+RLVMSIAQ+YDN+GAEMADL+QGGLI LLRGIEKFDSSKG++ISTYVYWWIR
Sbjct: 271  EKLAMSNVRLVMSIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 330

Query: 2480 QGVSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNA 2659
            QGVSRALVENSRTLRLP HLHERL  IRNAKIRLE KGI PS+D IAESLNMS+KKVRNA
Sbjct: 331  QGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNA 390

Query: 2660 TEAVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATL 2839
            TEA+ KV SLD++AFP+LNGLPGET HSYI DN+LEN PW G + W+LK+EV+KL++  L
Sbjct: 391  TEAISKVFSLDRDAFPSLNGLPGETHHSYIADNRLENIPWHGVDAWALKEEVSKLINMML 450

Query: 2840 GKREREIIRLYYGLDEECHTWEDISRQ 2920
            G+RE+EII+LYYGL+ EC TWEDIS++
Sbjct: 451  GEREKEIIQLYYGLENECLTWEDISKR 477



 Score = 55.1 bits (131), Expect(2) = e-142
 Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHR-LPQSSSLSTKSVILANKSSHF 1736
            MMATAAVIGLS GKRLL SS FY SD+ EK F   +H         STK+V+ A K S+ 
Sbjct: 1    MMATAAVIGLSTGKRLLNSS-FYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNC 59

Query: 1737 GPNLPSN 1757
                PS+
Sbjct: 60   SSRFPSS 66


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  472 bits (1214), Expect(2) = e-141
 Identities = 244/369 (66%), Positives = 289/369 (78%), Gaps = 1/369 (0%)
 Frame = +2

Query: 1817 ESSLEAIVLLQKSMLEKQWKLSFDGIATEVASGES-CRKIEVTRSGVSARQRRAKCRKKY 1993
            + S+E ++LLQKSMLEKQW LS +   T     E   +K+ +T SG SAR+RR   R++ 
Sbjct: 105  DESVEVLLLLQKSMLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRV 164

Query: 1994 LHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSKKIKAGXXX 2173
            L +++S    + +K  RS + PE LQ+R KGYV+G VSE+LLTHAEV+ LSKKI+ G   
Sbjct: 165  LDRHSSATPTSAAKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYL 224

Query: 2174 XXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRLVMSIAQKY 2353
                       G EPSD QLA SL++SR +L + L+E SLARE+LAMSN+RLVMSIAQ+Y
Sbjct: 225  EEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRY 284

Query: 2354 DNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVENSRTLRLPV 2533
            DN+GAEMADLVQGGLI LLRGIEKFD SKGY+ISTYVYWWIRQGVSRALVENSRTLRLP 
Sbjct: 285  DNVGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPT 344

Query: 2534 HLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISLDKEAFPTL 2713
            +LHERLS IRNAK RLE KGI PS++NIA SLNMSQKKVRNATEA  K+ SLD+EAFP+L
Sbjct: 345  YLHERLSLIRNAKARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSL 404

Query: 2714 NGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRLYYGLDEEC 2893
            NGLPGETLHSYI DN LEN+PW G + W+LKDEVN L+ +TL  REREIIRLYYGLD EC
Sbjct: 405  NGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNEC 464

Query: 2894 HTWEDISRQ 2920
             TWEDIS++
Sbjct: 465  LTWEDISKR 473



 Score = 61.6 bits (148), Expect(2) = e-141
 Identities = 38/66 (57%), Positives = 44/66 (66%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MM+TAAVIGLSAGKRLL SS FY SDL EK     +H LP     S K+VI A KSS + 
Sbjct: 1    MMSTAAVIGLSAGKRLLSSS-FYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYS 59

Query: 1740 PNLPSN 1757
            P+  S+
Sbjct: 60   PSCVSS 65


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Glycine
            max] gi|571478813|ref|XP_006587676.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Glycine
            max]
          Length = 503

 Score =  480 bits (1236), Expect(2) = e-141
 Identities = 252/387 (65%), Positives = 304/387 (78%), Gaps = 7/387 (1%)
 Frame = +2

Query: 1781 WFQEVGATDIVAESS-----LEAIVLLQKSMLEKQWKLSFDG-IATEVAS-GESCRKIEV 1939
            WFQ   + D+  ESS     +EA++LLQKSMLEKQW LSF+  + TE +S G+ C+K+ V
Sbjct: 88   WFQSCNSNDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLTEHSSKGKKCKKVAV 147

Query: 1940 TRSGVSARQRRAKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLL 2119
            T SGVSARQRR   ++K      + +    + Q +S++SPE LQ R KGYV+G VSE+LL
Sbjct: 148  TCSGVSARQRRMNTKRK------TAIKTCGAMQLKSKISPELLQHRLKGYVKGIVSEELL 201

Query: 2120 THAEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAR 2299
            +HAEVV+LS++IK G              G EPSD Q+A SL+ISR EL A ++E +LAR
Sbjct: 202  SHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPSDDQMAISLKISRTELRARMIECTLAR 261

Query: 2300 EKLAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIR 2479
            EKLAMSN+RLVMSIAQKYDNLGAEM DLVQGGLI LLRGIEKFDSSKG++ISTYVYWWIR
Sbjct: 262  EKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIR 321

Query: 2480 QGVSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNA 2659
            QGVSRALVENSRTLRLP HLHERLS IRNAK RLE +GI P++D IA+ LNMSQKKVRNA
Sbjct: 322  QGVSRALVENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNA 381

Query: 2660 TEAVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATL 2839
            TEA+ K ISLD+EAFP+LNG+ GET HSYI D+++EN PW G +EW+LKDEVNKL++ TL
Sbjct: 382  TEAISKTISLDREAFPSLNGIQGETHHSYIADDRVENIPWNGVDEWALKDEVNKLINVTL 441

Query: 2840 GKREREIIRLYYGLDEECHTWEDISRQ 2920
             +REREIIRLYYGLD+E  TWEDIS++
Sbjct: 442  VEREREIIRLYYGLDKEGLTWEDISKR 468



 Score = 51.6 bits (122), Expect(2) = e-141
 Identities = 32/65 (49%), Positives = 40/65 (61%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGLS GKRLL SS  Y SD+ EK     +        + TKS+I A KSS++ P
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHY-SDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTP 59

Query: 1743 NLPSN 1757
              P++
Sbjct: 60   TFPAS 64


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 509

 Score =  470 bits (1209), Expect(2) = e-141
 Identities = 243/385 (63%), Positives = 291/385 (75%), Gaps = 5/385 (1%)
 Frame = +2

Query: 1781 WFQEV----GATDIVAESSLEAIVLLQKSMLEKQWKLSFDGIAT-EVASGESCRKIEVTR 1945
            WF+        +D   + S+E ++LLQKSMLEKQW LS +   T      ++C+K+ +  
Sbjct: 90   WFERFEQLQNESDDEEDDSVEVLLLLQKSMLEKQWNLSAEETLTASTQRKKNCKKMHIAC 149

Query: 1946 SGVSARQRRAKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTH 2125
            SG SAR+RR   R++ L Q +S    + +K  RS + P+ LQ+R KGYV+G VSE+LLTH
Sbjct: 150  SGTSARRRRMDSRQRVLAQKSSATPISATKPLRSILGPDLLQNRLKGYVKGIVSEELLTH 209

Query: 2126 AEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREK 2305
             EV+ LSKKIK G              G EPSD QLA SL++SR +L + L+E SLARE+
Sbjct: 210  TEVLQLSKKIKVGLHVEEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARER 269

Query: 2306 LAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQG 2485
            L+MSN+RLVMSIAQ+YDN+GAEMADLVQGGLI LLRGIEKFD SKGY+ISTYVYWWIRQG
Sbjct: 270  LSMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQG 329

Query: 2486 VSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATE 2665
            VSR LVENSRTLRLP HLHERL  IRNAK+RLE KGI PS++NIA SLNMSQKKVRNATE
Sbjct: 330  VSRTLVENSRTLRLPTHLHERLGLIRNAKMRLEEKGINPSVNNIAASLNMSQKKVRNATE 389

Query: 2666 AVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGK 2845
            A  KV SLD+E FP+LNGLPG TLHSYI DN LEN+PW G + W+LKDEVN L+ +TL +
Sbjct: 390  ASSKVYSLDREVFPSLNGLPGTTLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRE 449

Query: 2846 REREIIRLYYGLDEECHTWEDISRQ 2920
            REREIIRLYYGLD EC TWEDIS++
Sbjct: 450  REREIIRLYYGLDSECLTWEDISKR 474



 Score = 60.8 bits (146), Expect(2) = e-141
 Identities = 37/66 (56%), Positives = 44/66 (66%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MMAT AVIGLSAGKRLL SS FY SDL EK   + +H LP     + K+VI A KSS + 
Sbjct: 1    MMATTAVIGLSAGKRLLSSS-FYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYS 59

Query: 1740 PNLPSN 1757
            P+  S+
Sbjct: 60   PSCVSS 65


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  474 bits (1220), Expect(2) = e-140
 Identities = 258/387 (66%), Positives = 308/387 (79%), Gaps = 8/387 (2%)
 Frame = +2

Query: 1784 FQEVGATD-IVAESSLEAIVLLQKSMLEKQWKLSFDGIATEVASGE-SCRKIEV---TRS 1948
            F+E G  D ++   S+EA++LLQKSMLEK W LSF+  A+  +SG+ + RK +V   T S
Sbjct: 100  FEEGGYDDDVLIGHSVEALLLLQKSMLEKSWNLSFEKAASSESSGKRTIRKKKVPVITCS 159

Query: 1949 GVSARQRRAKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQ-SRFKG-YVRGRVSEDLL 2119
            G+SARQRR   +KK    +A  VS  +  KQ RS +S E  Q +R +G YV+G +SED+L
Sbjct: 160  GISARQRRIGAKKKTNMTSAKAVSDVSSGKQVRSVMSSELFQHNRVRGGYVKGVISEDVL 219

Query: 2120 THAEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAR 2299
            +H EVV LSKKIK+G              G EPSD+QLA SL+ISRAEL A LME  LAR
Sbjct: 220  SHTEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAR 279

Query: 2300 EKLAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIR 2479
            EKLAMSN+RLVMSIAQ+YDNLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIR
Sbjct: 280  EKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR 339

Query: 2480 QGVSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNA 2659
            QGVSRALV+NSRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNA
Sbjct: 340  QGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNA 399

Query: 2660 TEAVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATL 2839
            TEAV K+ SLD++AFP+LNGLPGET HSYI DN+LEN+PW G++E +LK+EV+KL+ ATL
Sbjct: 400  TEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLENNPWHGYDELALKEEVSKLITATL 459

Query: 2840 GKREREIIRLYYGLDEECHTWEDISRQ 2920
            G+REREIIRLYYGLD+EC TWEDIS++
Sbjct: 460  GEREREIIRLYYGLDKECLTWEDISKR 486



 Score = 55.8 bits (133), Expect(2) = e-140
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANK---SSH 1733
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K   SS+
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASSSSN 59

Query: 1734 FGPNLPSN 1757
            + P+ PS+
Sbjct: 60   YSPSFPSS 67


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
            gi|550325184|gb|EEE95160.2| hypothetical protein
            POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  466 bits (1199), Expect(2) = e-140
 Identities = 246/371 (66%), Positives = 296/371 (79%), Gaps = 1/371 (0%)
 Frame = +2

Query: 1811 VAESSLEAIVLLQKSMLEKQWKLSFDGI-ATEVASGESCRKIEVTRSGVSARQRRAKCRK 1987
            V + S+EA++LLQKSMLEKQW LSF+ I +++    +S +KI VT SGVSARQRR   ++
Sbjct: 104  VLDYSVEALILLQKSMLEKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKR 163

Query: 1988 KYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSKKIKAGX 2167
            K  +QN S        +F S +SP+ L +R KGYV+G VS+++L H EVV LS+ I+AG 
Sbjct: 164  K--NQNQS--------KFMSDISPDLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGL 213

Query: 2168 XXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRLVMSIAQ 2347
                         G EPSD+QLA SLRISRA+L + L++ SLAREKLAMSN+RLVMSIAQ
Sbjct: 214  SLEDHKSSLKERLGCEPSDEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQ 273

Query: 2348 KYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVENSRTLRL 2527
            K DN+GAEMADLVQ GLI LLRGIEKFDSSKG++ISTYVYWWIRQGVSRALVEN RTLRL
Sbjct: 274  KNDNMGAEMADLVQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRL 333

Query: 2528 PVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISLDKEAFP 2707
            P HLHERL  IRNAKIRLE KG+ PS+D IAESLNMSQ+KVRNATEA+ KV SLD+EAFP
Sbjct: 334  PNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFP 393

Query: 2708 TLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRLYYGLDE 2887
            +LNGLPGET HSYI DN+LEN+PW G +EW+LK+EVNKL+ + L +REREIIRLY+GLD+
Sbjct: 394  SLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDK 453

Query: 2888 ECHTWEDISRQ 2920
            EC TWEDIS++
Sbjct: 454  ECLTWEDISKR 464



 Score = 63.9 bits (154), Expect(2) = e-140
 Identities = 36/66 (54%), Positives = 45/66 (68%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MMATA+ IGL+ GKRLL SS FY SDL EK     +H +      +TKSVI+A KSS +G
Sbjct: 1    MMATASFIGLTTGKRLLSSS-FYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYG 59

Query: 1740 PNLPSN 1757
            P+ PS+
Sbjct: 60   PSFPSS 65


>gb|ESW03465.1| hypothetical protein PHAVU_011G016400g [Phaseolus vulgaris]
          Length = 504

 Score =  474 bits (1221), Expect(2) = e-140
 Identities = 248/388 (63%), Positives = 304/388 (78%), Gaps = 8/388 (2%)
 Frame = +2

Query: 1781 WFQEVGATDIVAESS-----LEAIVLLQKSMLEKQWKLSFDGIA-TEVASGE-SCRKIE- 1936
            WFQ + + D+  ESS     +EA++LLQKSMLEKQW LSF+G   TE +S E +CRK+  
Sbjct: 88   WFQSLSSNDLEVESSEMGYSVEALLLLQKSMLEKQWSLSFEGEGVTEHSSKEKNCRKVAA 147

Query: 1937 VTRSGVSARQRRAKCRKKYLHQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDL 2116
            VT SGVSARQRR   ++K      + V    + Q +S++SPE LQ+R KGYV+G VSE+L
Sbjct: 148  VTCSGVSARQRRMNAKRK------TAVKTGGAVQLKSKISPELLQNRLKGYVKGVVSEEL 201

Query: 2117 LTHAEVVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLA 2296
            L+HA+VVSLS+KIK G              G EPSD ++A+SL+IS  EL   ++E SLA
Sbjct: 202  LSHAQVVSLSEKIKVGLSLEEHKSRMKERLGCEPSDDEIATSLKISSTELREKMLECSLA 261

Query: 2297 REKLAMSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWI 2476
            REKLAMSN+RLVMSIAQ+Y+N G EM DLVQGGLI LLRGIEKFDSSKG++ISTYVYWWI
Sbjct: 262  REKLAMSNVRLVMSIAQRYENAGTEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 321

Query: 2477 RQGVSRALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRN 2656
            RQGVS+AL+ENSRTLRLP HLHERLS IRNAK+RLE +GI P++D IA+ LNMSQKKVRN
Sbjct: 322  RQGVSKALIENSRTLRLPAHLHERLSLIRNAKLRLEERGITPTIDRIAQHLNMSQKKVRN 381

Query: 2657 ATEAVVKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHAT 2836
            ATEA+ K ISLD+EAFP+LNGL G+T HSYI DN++EN PW G +EW+LKDEVN+L++ T
Sbjct: 382  ATEAISKTISLDREAFPSLNGLRGDTHHSYIADNRVENIPWEGVDEWALKDEVNRLINVT 441

Query: 2837 LGKREREIIRLYYGLDEECHTWEDISRQ 2920
            L +REREIIRLYYGL +EC TWEDIS++
Sbjct: 442  LKEREREIIRLYYGLGKECLTWEDISKR 469



 Score = 53.9 bits (128), Expect(2) = e-140
 Identities = 33/64 (51%), Positives = 41/64 (64%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MA+AAVIGLS GKRLL SS  Y SD+ EK     +        +STKSVI+A KSS++ P
Sbjct: 1    MASAAVIGLSGGKRLLSSSYHY-SDIIEKLSYGSDFGSTHYQIVSTKSVIVAKKSSNYTP 59

Query: 1743 NLPS 1754
              P+
Sbjct: 60   TFPA 63


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  504 bits (1299), Expect = e-140
 Identities = 260/367 (70%), Positives = 302/367 (82%), Gaps = 1/367 (0%)
 Frame = +2

Query: 1823 SLEAIVLLQKSMLEKQWKLSFDG-IATEVASGESCRKIEVTRSGVSARQRRAKCRKKYLH 1999
            S+EA++LLQKSMLEKQW LSF+  + T+  S ++ +K+ VT SGVSARQRR   +KK L 
Sbjct: 107  SVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS 166

Query: 2000 QNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSKKIKAGXXXXX 2179
            QN SV   N SKQ RS +SPE +Q+  KGYV+G VSE+LLTHAEVV LSKKIK G     
Sbjct: 167  QNKSVPQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226

Query: 2180 XXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRLVMSIAQKYDN 2359
                     G EPS +QLA+SLRISR EL +ILME SLAREKL MSN+RLVMSIAQ+YDN
Sbjct: 227  HKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 286

Query: 2360 LGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVENSRTLRLPVHL 2539
            +GA+MADLVQGGLI LLRGIEKFDSSKG++ISTYVYWWIRQGVSRALVENSRTLRLP HL
Sbjct: 287  MGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 346

Query: 2540 HERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISLDKEAFPTLNG 2719
            HERL  IRNAK+RLE KG+ PS+D IAE LNMSQKKVRNATEA+ KV SLD+EAFP+LNG
Sbjct: 347  HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNG 406

Query: 2720 LPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRLYYGLDEECHT 2899
            LPGET HSYI DN++EN+PW G ++W+LKDEVNKL+  TLG+REREIIRLYYGLD+EC T
Sbjct: 407  LPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 466

Query: 2900 WEDISRQ 2920
            WEDIS++
Sbjct: 467  WEDISKR 473



 Score = 60.8 bits (146), Expect = 3e-06
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MMATAAVIGLSAGKRLL SS FY SD+ EK     +     S   STK+V+ A KSS++ 
Sbjct: 1    MMATAAVIGLSAGKRLLSSS-FYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1740 PNLPSN 1757
            P+ PS+
Sbjct: 60   PSFPSS 65


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  504 bits (1298), Expect = e-140
 Identities = 258/367 (70%), Positives = 303/367 (82%), Gaps = 1/367 (0%)
 Frame = +2

Query: 1823 SLEAIVLLQKSMLEKQWKLSFDG-IATEVASGESCRKIEVTRSGVSARQRRAKCRKKYLH 1999
            S+EA++LLQKSMLEKQW LSF+  + T+  S ++ +K+ VT SGVSARQRR   +KK L 
Sbjct: 107  SVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS 166

Query: 2000 QNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSKKIKAGXXXXX 2179
            QN SV+  N SKQ RS +SPE +Q+  KGYV+G VSE+LLTHAEVV LSKKIK G     
Sbjct: 167  QNKSVLQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226

Query: 2180 XXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRLVMSIAQKYDN 2359
                     G EPS +QLA+SLRISR EL +ILME SLAREKL MSN+RLVMSIAQ+YDN
Sbjct: 227  HKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 286

Query: 2360 LGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVENSRTLRLPVHL 2539
            +GA+MADL+QGGLI LLRGIEKFDSSKG++ISTYVYWWIRQGVSRALVENSRTLRLP HL
Sbjct: 287  MGADMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 346

Query: 2540 HERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISLDKEAFPTLNG 2719
            HERL  IRNAK+RLE KG+ P++D IAE LNMSQKKVRNATEA+ KV SLD+EAFP+LNG
Sbjct: 347  HERLGLIRNAKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNG 406

Query: 2720 LPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRLYYGLDEECHT 2899
            LPGET HSYI DN++EN+PW G ++W+LKDEVNKL+  TLG+REREIIRLYYGLD+EC T
Sbjct: 407  LPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 466

Query: 2900 WEDISRQ 2920
            WEDIS++
Sbjct: 467  WEDISKR 473



 Score = 60.8 bits (146), Expect = 3e-06
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = +3

Query: 1560 MMATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFG 1739
            MMATAAVIGLSAGKRLL SS FY SD+ EK     +     S   STK+V+ A KSS++ 
Sbjct: 1    MMATAAVIGLSAGKRLLSSS-FYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1740 PNLPSN 1757
            P+ PS+
Sbjct: 60   PSFPSS 65


>ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 503

 Score =  462 bits (1189), Expect(2) = e-137
 Identities = 249/383 (65%), Positives = 297/383 (77%), Gaps = 5/383 (1%)
 Frame = +2

Query: 1787 QEVGATDIVAESSLEAIVLLQKSMLEKQWKLSFDGIAT-EVASGESCRKIEV---TRSGV 1954
            +E G  D +   S+EA++LLQKSMLEK W LSF+  A+ E +S  + RK ++   T SG+
Sbjct: 99   EEEGYDDDLIGHSVEALLLLQKSMLEKSWNLSFEKAASSESSSKRTIRKKKIPVITCSGI 158

Query: 1955 SARQRRAKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAE 2131
            SARQRR   +KK    +   VS  +  KQ R             GYV+G +SED+L+HAE
Sbjct: 159  SARQRRIGAKKKTNMTHVKAVSDVSSGKQVR-------------GYVKGVISEDVLSHAE 205

Query: 2132 VVSLSKKIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLA 2311
            VV LSKKIK+G              G EPSD+QLA SL+ISRAEL A LME  LAREKLA
Sbjct: 206  VVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLA 265

Query: 2312 MSNIRLVMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVS 2491
            MSN+RLVMSIAQ+YDNLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIRQGVS
Sbjct: 266  MSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVS 325

Query: 2492 RALVENSRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAV 2671
            RALV+NSRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNATEAV
Sbjct: 326  RALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAV 385

Query: 2672 VKVISLDKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKRE 2851
             K+ SLD++AFP+LNGLPGET HSYI DN++EN+PW G+++ +LK+EV+KL+ ATLG+RE
Sbjct: 386  SKIFSLDRDAFPSLNGLPGETHHSYIADNRVENNPWHGYDDLALKEEVSKLISATLGERE 445

Query: 2852 REIIRLYYGLDEECHTWEDISRQ 2920
            REIIRLYYGLD+EC TWEDIS++
Sbjct: 446  REIIRLYYGLDKECLTWEDISKR 468



 Score = 56.2 bits (134), Expect(2) = e-137
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANK--SSHF 1736
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K  SS++
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASSSNY 59

Query: 1737 GPNLPSN 1757
             P+ PS+
Sbjct: 60   SPSFPSS 66


>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
          Length = 502

 Score =  457 bits (1176), Expect(2) = e-136
 Identities = 246/377 (65%), Positives = 292/377 (77%), Gaps = 5/377 (1%)
 Frame = +2

Query: 1805 DIVAESSLEAIVLLQKSMLEKQWKLSFD-GIATEVASGESCRKIEV---TRSGVSARQRR 1972
            D +   S+EAI+LLQKSMLEK W LSF+  +++E     + RK ++   T SG+SARQRR
Sbjct: 104  DDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRR 163

Query: 1973 AKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSK 2149
               +KK    +   VS  +  KQ R             GYV+G +SED+L+HAEVV LSK
Sbjct: 164  IGAKKKTNMTHVKAVSDVSSGKQVR-------------GYVKGVISEDVLSHAEVVRLSK 210

Query: 2150 KIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRL 2329
            KIK+G              G EPSD+QLA SL+ISRAEL A LME  LAREKLAMSN+RL
Sbjct: 211  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 2330 VMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVEN 2509
            VMSIAQ+YDNLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIRQGVSRALV+N
Sbjct: 271  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 2510 SRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISL 2689
            SRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNATEAV KV SL
Sbjct: 331  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSL 390

Query: 2690 DKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRL 2869
            D++AFP+LNGLPGET HSYI D +LEN+PW G+++ +LK+EV+KL+ ATLG+RE+EIIRL
Sbjct: 391  DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRL 450

Query: 2870 YYGLDEECHTWEDISRQ 2920
            YYGLD+EC TWEDIS++
Sbjct: 451  YYGLDKECLTWEDISKR 467



 Score = 59.3 bits (142), Expect(2) = e-136
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K+S++ P
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYRP 59

Query: 1743 NLPSN 1757
            + PS+
Sbjct: 60   SFPSS 64


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  469 bits (1206), Expect(2) = e-136
 Identities = 243/368 (66%), Positives = 284/368 (77%)
 Frame = +2

Query: 1817 ESSLEAIVLLQKSMLEKQWKLSFDGIATEVASGESCRKIEVTRSGVSARQRRAKCRKKYL 1996
            E S+E ++LLQKSMLEKQW LS +   T        +K+++T SG SAR+RR   RK+ L
Sbjct: 102  EDSVEVLLLLQKSMLEKQWNLSAEKAMTN--ENNCKKKMQITCSGTSARRRRMDTRKRDL 159

Query: 1997 HQNASVVSFNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSKKIKAGXXXX 2176
                S  S + SK+ RS + PE LQ+R KGY+ G V ++LLTH EVV LSKKIK G    
Sbjct: 160  LPKNSATSDSSSKRLRSVIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLE 219

Query: 2177 XXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRLVMSIAQKYD 2356
                      G EPSD QLA SL+ISRA+L + L+E SLAREKLAMSN+RLVMSIAQ+YD
Sbjct: 220  EQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYD 279

Query: 2357 NLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVENSRTLRLPVH 2536
              G EMADL+QGGLI LLRGIEKFD S+G++ISTYVYWWIRQGVSRALVENSRTLRLP+H
Sbjct: 280  TNGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIH 339

Query: 2537 LHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISLDKEAFPTLN 2716
            LHERLS IRNAKI+L+  GI PS++ IAE LNMSQKKVRNATEA  KV SLD+EAFP+LN
Sbjct: 340  LHERLSLIRNAKIKLKENGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLN 399

Query: 2717 GLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRLYYGLDEECH 2896
            GLPGETLHSYI DN+LEN PW G +EW LKDEVN L+ +TL +REREI+RLYYGLD EC 
Sbjct: 400  GLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECL 459

Query: 2897 TWEDISRQ 2920
            TWEDISR+
Sbjct: 460  TWEDISRR 467



 Score = 47.4 bits (111), Expect(2) = e-136
 Identities = 31/61 (50%), Positives = 38/61 (62%)
 Frame = +3

Query: 1575 AVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGPNLPS 1754
            A+IGLSAG R+L SS FY S L EK F   +H LP     S K+VI A  SS++ P+  S
Sbjct: 3    AIIGLSAGNRILSSS-FYYSVLTEK-FCVSDHALPCHHFPSPKNVINAKNSSNYSPSYVS 60

Query: 1755 N 1757
            N
Sbjct: 61   N 61


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  456 bits (1172), Expect(2) = e-136
 Identities = 245/377 (64%), Positives = 291/377 (77%), Gaps = 5/377 (1%)
 Frame = +2

Query: 1805 DIVAESSLEAIVLLQKSMLEKQWKLSFD-GIATEVASGESCRKIEV---TRSGVSARQRR 1972
            D +   S+EAI+LLQKSMLEK W LSF+  +++E     + RK ++   T SG+SARQRR
Sbjct: 104  DDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRR 163

Query: 1973 AKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSK 2149
               +KK    +   VS  +  KQ R             GYV+G +SED+L+H EVV LSK
Sbjct: 164  IGAKKKTNMTHVKAVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSK 210

Query: 2150 KIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRL 2329
            KIK+G              G EPSD+QLA SL+ISRAEL A LME  LAREKLAMSN+RL
Sbjct: 211  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 2330 VMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVEN 2509
            VMSIAQ+YDNLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIRQGVSRALV+N
Sbjct: 271  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 2510 SRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISL 2689
            SRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNATEAV KV SL
Sbjct: 331  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSL 390

Query: 2690 DKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRL 2869
            D++AFP+LNGLPGET HSYI D +LEN+PW G+++ +LK+EV+KL+ ATLG+RE+EIIRL
Sbjct: 391  DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRL 450

Query: 2870 YYGLDEECHTWEDISRQ 2920
            YYGLD+EC TWEDIS++
Sbjct: 451  YYGLDKECLTWEDISKR 467



 Score = 60.1 bits (144), Expect(2) = e-136
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K+S++ P
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSP 59

Query: 1743 NLPSN 1757
            + PS+
Sbjct: 60   SFPSS 64


>ref|NP_001185314.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|332196178|gb|AEE34299.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 498

 Score =  456 bits (1172), Expect(2) = e-136
 Identities = 245/377 (64%), Positives = 291/377 (77%), Gaps = 5/377 (1%)
 Frame = +2

Query: 1805 DIVAESSLEAIVLLQKSMLEKQWKLSFD-GIATEVASGESCRKIEV---TRSGVSARQRR 1972
            D +   S+EAI+LLQKSMLEK W LSF+  +++E     + RK ++   T SG+SARQRR
Sbjct: 104  DDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRR 163

Query: 1973 AKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSK 2149
               +KK    +   VS  +  KQ R             GYV+G +SED+L+H EVV LSK
Sbjct: 164  IGAKKKTNMTHVKAVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSK 210

Query: 2150 KIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRL 2329
            KIK+G              G EPSD+QLA SL+ISRAEL A LME  LAREKLAMSN+RL
Sbjct: 211  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 2330 VMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVEN 2509
            VMSIAQ+YDNLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIRQGVSRALV+N
Sbjct: 271  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 2510 SRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISL 2689
            SRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNATEAV KV SL
Sbjct: 331  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSL 390

Query: 2690 DKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRL 2869
            D++AFP+LNGLPGET HSYI D +LEN+PW G+++ +LK+EV+KL+ ATLG+RE+EIIRL
Sbjct: 391  DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRL 450

Query: 2870 YYGLDEECHTWEDISRQ 2920
            YYGLD+EC TWEDIS++
Sbjct: 451  YYGLDKECLTWEDISKR 467



 Score = 60.1 bits (144), Expect(2) = e-136
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K+S++ P
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSP 59

Query: 1743 NLPSN 1757
            + PS+
Sbjct: 60   SFPSS 64


>gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
          Length = 502

 Score =  454 bits (1167), Expect(2) = e-136
 Identities = 244/377 (64%), Positives = 291/377 (77%), Gaps = 5/377 (1%)
 Frame = +2

Query: 1805 DIVAESSLEAIVLLQKSMLEKQWKLSFD-GIATEVASGESCRKIEV---TRSGVSARQRR 1972
            D +   S+EAI+LLQKSMLEK W LSF+  +++E     + RK ++   T SG+SARQRR
Sbjct: 104  DDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRR 163

Query: 1973 AKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSK 2149
               +KK    +   VS  +  KQ R             GYV+G +SED+L+H EVV LSK
Sbjct: 164  IGAKKKTNMTHVKAVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSK 210

Query: 2150 KIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRL 2329
            KIK+G              G EPSD+QLA SL+ISRAEL A LME  LAREKLAMSN+RL
Sbjct: 211  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 2330 VMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVEN 2509
            VMSIAQ+Y+NLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIRQGVSRALV+N
Sbjct: 271  VMSIAQRYNNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 2510 SRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISL 2689
            SRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNATEAV KV SL
Sbjct: 331  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSL 390

Query: 2690 DKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRL 2869
            D++AFP+LNGLPGET HSYI D +LEN+PW G+++ +LK+EV+KL+ ATLG+RE+EIIRL
Sbjct: 391  DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRL 450

Query: 2870 YYGLDEECHTWEDISRQ 2920
            YYGLD+EC TWEDIS++
Sbjct: 451  YYGLDKECLTWEDISKR 467



 Score = 60.1 bits (144), Expect(2) = e-136
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K+S++ P
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSP 59

Query: 1743 NLPSN 1757
            + PS+
Sbjct: 60   SFPSS 64


>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 502

 Score =  453 bits (1166), Expect(2) = e-135
 Identities = 244/377 (64%), Positives = 290/377 (76%), Gaps = 5/377 (1%)
 Frame = +2

Query: 1805 DIVAESSLEAIVLLQKSMLEKQWKLSFD-GIATEVASGESCRKIEV---TRSGVSARQRR 1972
            D +   S+EAI+LLQKSMLEK W LSF+  +++E     + RK ++   T SG+SAR RR
Sbjct: 104  DDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRR 163

Query: 1973 AKCRKKYLHQNASVVS-FNKSKQFRSRVSPEFLQSRFKGYVRGRVSEDLLTHAEVVSLSK 2149
               +KK    +   VS  +  KQ R             GYV+G +SED+L+H EVV LSK
Sbjct: 164  IGAKKKTNMTHVKAVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSK 210

Query: 2150 KIKAGXXXXXXXXXXXXXXGFEPSDKQLASSLRISRAELHAILMEFSLAREKLAMSNIRL 2329
            KIK+G              G EPSD+QLA SL+ISRAEL A LME  LAREKLAMSN+RL
Sbjct: 211  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 2330 VMSIAQKYDNLGAEMADLVQGGLIALLRGIEKFDSSKGYRISTYVYWWIRQGVSRALVEN 2509
            VMSIAQ+YDNLGAEM+DLVQGGLI LLRGIEKFDSSKG+RISTYVYWWIRQGVSRALV+N
Sbjct: 271  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 2510 SRTLRLPVHLHERLSSIRNAKIRLEGKGIAPSLDNIAESLNMSQKKVRNATEAVVKVISL 2689
            SRTLRLP HLHERL  IRNAK+RL+ KGI PS+D IAESLNMSQKKVRNATEAV KV SL
Sbjct: 331  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSL 390

Query: 2690 DKEAFPTLNGLPGETLHSYIPDNKLENDPWIGFEEWSLKDEVNKLLHATLGKREREIIRL 2869
            D++AFP+LNGLPGET HSYI D +LEN+PW G+++ +LK+EV+KL+ ATLG+RE+EIIRL
Sbjct: 391  DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRL 450

Query: 2870 YYGLDEECHTWEDISRQ 2920
            YYGLD+EC TWEDIS++
Sbjct: 451  YYGLDKECLTWEDISKR 467



 Score = 60.1 bits (144), Expect(2) = e-135
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 1563 MATAAVIGLSAGKRLLRSSLFYSSDLPEKPFPAPEHRLPQSSSLSTKSVILANKSSHFGP 1742
            MATAAVIGL+ GKRLL SS FY SD+ EK     +H   Q    STKS I A K+S++ P
Sbjct: 1    MATAAVIGLNTGKRLLSSS-FYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSP 59

Query: 1743 NLPSN 1757
            + PS+
Sbjct: 60   SFPSS 64