BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00059943
         (304 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]          68   2e-09
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru...    64   2e-08

>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
          Length = 1799

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
 Frame = -3

Query: 296 YLKSKADATLSTIQHFHKKVSDRIEYLDNTLRYYIDLHFQGTDFDEKEREIRQLKIQLKQ 117
           +L++K D+  + +Q  H+K+  RI  LD+ LR  +   + G +FD+KEREIR+LK +L Q
Sbjct: 520 HLETKVDSISAQLQQIHQKLQSRIAQLDSELRTMLAQRYHGPEFDQKEREIRRLKAELAQ 579

Query: 116 IEDDLKK-KYQPSSPP-------FNPTSKYASPL--YSPS 27
           IE D +K     SSPP       ++P +   SP+  Y PS
Sbjct: 580 IESDKQKPSLFTSSPPIPSIGPTYHPFASMLSPIRQYEPS 619


>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
           gi|565672276|gb|AHC13194.1| polyprotein [Citrus
           endogenous pararetrovirus]
          Length = 1812

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 34/89 (38%), Positives = 50/89 (56%)
 Frame = -3

Query: 296 YLKSKADATLSTIQHFHKKVSDRIEYLDNTLRYYIDLHFQGTDFDEKEREIRQLKIQLKQ 117
           +L++K D+  + +Q  H+ +  RI  LD+ LR  +   + G +FD+KEREIR LK +L Q
Sbjct: 533 HLETKVDSISAQLQQIHQNLQSRIAQLDSELRTMLAQRYHGPEFDQKEREIRHLKAELAQ 592

Query: 116 IEDDLKKKYQPSSPPFNPTSKYASPLYSP 30
           IE D   K +PS    +P      P Y P
Sbjct: 593 IESD---KQKPSLFTSSPPIPSIGPTYHP 618