BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00056245
         (374 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73911.1| polyprotein [Citrus sinensis]                          139   5e-32
gb|AFB73912.1| polyprotein [Citrus sinensis]                          139   5e-32
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             130   2e-28
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  125   5e-28
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              124   5e-27
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              123   1e-26
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              123   1e-26
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              122   2e-26
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    87   3e-15
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...    86   4e-15
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          86   4e-15
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]            86   4e-15
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      85   1e-14
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    85   1e-14
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         84   2e-14
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      84   3e-14
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                83   3e-14
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 83   3e-14
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]      80   2e-13
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    79   6e-13

>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  139 bits (351), Expect(2) = 5e-32
 Identities = 68/110 (61%), Positives = 79/110 (71%)
 Frame = -3

Query: 372 KRFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTI 193
           KR  +VWL+DS ATWHMTSRREWFH YEPISGGSVY+ NDHAL+I G GTIK+KM+DGTI
Sbjct: 286 KRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTI 345

Query: 192 STIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
            TI +VR V            +D  GY  H++N +MKIV G LV MK EK
Sbjct: 346 RTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEK 395



 Score = 23.9 bits (50), Expect(2) = 5e-32
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 47  KKVAVNMYMLEGETL 3
           +K+  N++ML+GETL
Sbjct: 394 EKIGANLFMLKGETL 408


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  139 bits (350), Expect(2) = 5e-32
 Identities = 68/110 (61%), Positives = 80/110 (72%)
 Frame = -3

Query: 372 KRFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTI 193
           KR  +VWL+DS ATWHMTSRREWFH YEPISGGSVY+ NDHAL+I G GTIK+KM+DGTI
Sbjct: 286 KRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTI 345

Query: 192 STIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
            TI++VR V            +D  G   H++N +MKIV G LV MKAEK
Sbjct: 346 RTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEK 395



 Score = 24.3 bits (51), Expect(2) = 5e-32
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 53  RRKKVAVNMYMLEGETL 3
           + +K+  N++ML+GETL
Sbjct: 392 KAEKICANLFMLKGETL 408


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  130 bits (326), Expect = 2e-28
 Identities = 64/110 (58%), Positives = 77/110 (70%)
 Frame = -3

Query: 372 KRFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTI 193
           KRF ++WL+DS AT+HMTSR+EWFHHYEPISGGSVY  +DHAL+I+G GTIK+KMYDGT+
Sbjct: 276 KRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTV 335

Query: 192 STIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
            T+Q VR V+           LD     I  +  VMKI  G LV MK EK
Sbjct: 336 QTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEK 385


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  125 bits (313), Expect(2) = 5e-28
 Identities = 58/109 (53%), Positives = 79/109 (72%)
 Frame = -3

Query: 369 RFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTIS 190
           R  +VW++DS ATWHMT RR+WF  YEP+S G+V++ NDHAL+IVG GT+K+KMYDGTI 
Sbjct: 286 RLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIR 345

Query: 189 TIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
           T+Q+VR V+           LD+LGY   ++  ++K+V G LV MKA+K
Sbjct: 346 TLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKK 394



 Score = 25.0 bits (53), Expect(2) = 5e-28
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 53  RRKKVAVNMYMLEGET 6
           + KKVA N+YML G+T
Sbjct: 391 KAKKVAANLYMLLGDT 406


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  124 bits (311), Expect(2) = 5e-27
 Identities = 60/110 (54%), Positives = 78/110 (70%)
 Frame = -3

Query: 372 KRFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTI 193
           +R  +VW+MDS ATWHMT  R+WF+ YEPIS GSVY+ NDHAL+I G GTI++KM+DGT+
Sbjct: 285 RRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTV 344

Query: 192 STIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
             IQ VR V+           LD+LG  IH ++ ++K+V G LV MKAEK
Sbjct: 345 RKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394



 Score = 22.3 bits (46), Expect(2) = 5e-27
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 53  RRKKVAVNMYMLEGETL 3
           + +K+  N+YML G+TL
Sbjct: 391 KAEKITSNLYMLLGDTL 407


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  123 bits (308), Expect(2) = 1e-26
 Identities = 60/110 (54%), Positives = 77/110 (70%)
 Frame = -3

Query: 372 KRFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTI 193
           +R  +VW+MDS ATWHMT  R+WF  YEPIS GSVY+ NDHAL+I G GTI++KM+DGT+
Sbjct: 285 RRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTV 344

Query: 192 STIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
             IQ VR V+           LD+LG  IH ++ ++K+V G LV MKAEK
Sbjct: 345 RKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394



 Score = 22.3 bits (46), Expect(2) = 1e-26
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 53  RRKKVAVNMYMLEGETL 3
           + +K+  N+YML G+TL
Sbjct: 391 KAEKITSNLYMLLGDTL 407


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  123 bits (308), Expect(2) = 1e-26
 Identities = 60/110 (54%), Positives = 77/110 (70%)
 Frame = -3

Query: 372 KRFVNVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTI 193
           +R  +VW+MDS ATWHMT  R+WF  YEPIS GSVY+ NDHAL+I G GTI++KM+DGT+
Sbjct: 285 RRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTV 344

Query: 192 STIQQVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
             IQ VR V+           LD+LG  IH ++ ++K+V G LV MKAEK
Sbjct: 345 RKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394



 Score = 22.3 bits (46), Expect(2) = 1e-26
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 53  RRKKVAVNMYMLEGETL 3
           + +K+  N+YML G+TL
Sbjct: 391 KAEKITSNLYMLLGDTL 407


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  122 bits (307), Expect(2) = 2e-26
 Identities = 59/106 (55%), Positives = 76/106 (71%)
 Frame = -3

Query: 360 NVWLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQ 181
           +VW+MDS ATWHMT  R+WF+ YEPIS GSVY+ NDHAL+I G GTI++KM+DGT+  IQ
Sbjct: 289 DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 180 QVRRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEK 43
            VR V+           LD+LG  IH ++ ++K+V G LV MKAEK
Sbjct: 349 GVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEK 394



 Score = 22.3 bits (46), Expect(2) = 2e-26
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 53  RRKKVAVNMYMLEGETL 3
           + +K+  N+YML G+TL
Sbjct: 391 KAEKITSNLYMLLGDTL 407


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 266 WILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 325

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H RG
Sbjct: 326 RHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 379


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           WL+D+  T+HM   R+WF  YEP+ GG+V + ++   K+ G GTI++KM+DG I T+  V
Sbjct: 242 WLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDV 301

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  +    H +G
Sbjct: 302 RHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQG 355


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G G +++KM+DG IST+  V
Sbjct: 132 WILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDV 191

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H RG
Sbjct: 192 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 245


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G G +++KM+DG IST+  V
Sbjct: 132 WILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDV 191

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H RG
Sbjct: 192 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 245


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 335 WILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDV 394

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H RG
Sbjct: 395 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 448


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 335 WILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDV 394

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H RG
Sbjct: 395 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 448


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 40/114 (35%), Positives = 62/114 (54%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 300 WILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 359

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA   S    H +G
Sbjct: 360 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQG 413


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 40/114 (35%), Positives = 62/114 (54%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 209 WILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDV 268

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+       H RG
Sbjct: 269 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRG 322


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 117 WILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 176

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H +G
Sbjct: 177 RHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQG 230


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 285 WILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 344

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H +G
Sbjct: 345 RHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQG 398


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 39/114 (34%), Positives = 61/114 (53%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++D+A T+HM   R+WF  YE + GG+V + +D   ++ G  T+++KM+DG I T+  V
Sbjct: 300 WILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLSDV 359

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD   Y     + ++K+  G LV MKA+  S    H RG
Sbjct: 360 RHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRG 413


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 38/114 (33%), Positives = 61/114 (53%)
 Frame = -3

Query: 354 WLMDSAATWHMTSRREWFHHYEPISGGSVYLDNDHALKIVGTGTIKVKMYDGTISTIQQV 175
           W++++A  +HM   R+WF  YE +  G+V + +D   ++ G GT+++KM+DG I T+  V
Sbjct: 507 WILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 566

Query: 174 RRVEXXXXXXXXXXXLDELGYGIHMKNRVMKIV*GLLV*MKAEKGSCKYVHARG 13
           R +            LD  GY     + ++K+  G LV MKA+  S    H RG
Sbjct: 567 RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 620