BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00053286
         (375 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]          247   1e-63
gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]             224   7e-57
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ...   224   1e-56
gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides]   224   1e-56
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]...   222   5e-56
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife...   222   5e-56
gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]           222   5e-56
gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]      222   5e-56
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ...   221   8e-56
ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphy...   219   4e-55
gb|ABD93716.1| RNA polymerase beta chain [Buxus sempervirens]         219   4e-55
ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tuli...   218   5e-55
gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis]      218   9e-55
ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occiden...   218   9e-55
gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]       216   3e-54
gb|ABD93715.1| RNA polymerase beta chain [Pachysandra procumbens]     214   8e-54
ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic...   214   1e-53
ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis...   213   2e-53
ref|YP_008993768.1| RNA polymerase beta' subunit (chloroplast) [...   213   3e-53
ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia trip...   212   4e-53

>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
          Length = 865

 Score =  247 bits (630), Expect = 1e-63
 Identities = 117/124 (94%), Positives = 118/124 (95%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAPKY YGNVHLLPKTSHLWILSGSPYTSS+V FLLHKDQDQMNVHSLSA
Sbjct: 1   GEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVSFLLHKDQDQMNVHSLSA 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ERSYISNLSVTNDQVRHKLFSSDPSGKK  RILDYSG DQIICKGHCNFIYPA LHADSD
Sbjct: 61  ERSYISNLSVTNDQVRHKLFSSDPSGKKAGRILDYSGSDQIICKGHCNFIYPATLHADSD 120

Query: 14  LLAK 3
           LLAK
Sbjct: 121 LLAK 124


>gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]
          Length = 861

 Score =  224 bits (572), Expect = 7e-57
 Identities = 105/124 (84%), Positives = 112/124 (90%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWST+VYHAP+Y YGNVHLLPKTSHLWILSG PY SSIVPF LHKDQDQMNV+S S 
Sbjct: 1   GEMHWSTNVYHAPEYTYGNVHLLPKTSHLWILSGDPYRSSIVPFSLHKDQDQMNVNSFSL 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLSVTNDQVRHKLF SDPSGKK +RILDYSG D+IICKGHCNF YPAILH +SD
Sbjct: 61  ERRYISNLSVTNDQVRHKLFRSDPSGKKAKRILDYSGPDRIICKGHCNFTYPAILHENSD 120

Query: 14  LLAK 3
           L+AK
Sbjct: 121 LVAK 124


>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
           aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
           beta'' subunit (chloroplast) [Trochodendron aralioides]
           gi|479279286|gb|AGJ72139.1| RNA polymerase beta''
           subunit (chloroplast) [Trochodendron aralioides]
          Length = 1381

 Score =  224 bits (571), Expect = 1e-56
 Identities = 106/124 (85%), Positives = 112/124 (90%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSG P  SSIVPF LHKDQDQMNV SLS 
Sbjct: 450 GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPCRSSIVPFSLHKDQDQMNVQSLSV 509

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER+YISNLSVTNDQV+HKLFS DPSGKKG RILDYSG ++IIC GHCNFIYPAILH +SD
Sbjct: 510 ERTYISNLSVTNDQVKHKLFSFDPSGKKGGRILDYSGPNRIICNGHCNFIYPAILHENSD 569

Query: 14  LLAK 3
           LLAK
Sbjct: 570 LLAK 573


>gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides]
          Length = 865

 Score =  224 bits (571), Expect = 1e-56
 Identities = 106/124 (85%), Positives = 112/124 (90%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSG P  SSIVPF LHKDQDQMNV SLS 
Sbjct: 1   GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPCRSSIVPFSLHKDQDQMNVQSLSV 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER+YISNLSVTNDQV+HKLFS DPSGKKG RILDYSG ++IIC GHCNFIYPAILH +SD
Sbjct: 61  ERTYISNLSVTNDQVKHKLFSFDPSGKKGGRILDYSGPNRIICNGHCNFIYPAILHENSD 120

Query: 14  LLAK 3
           LLAK
Sbjct: 121 LLAK 124


>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
           gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
           [Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
           polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
          Length = 1390

 Score =  222 bits (565), Expect = 5e-56
 Identities = 107/125 (85%), Positives = 113/125 (90%), Gaps = 1/125 (0%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSGSP  S+IVPF LHKDQDQM+VHSLS 
Sbjct: 450 GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGSPCRSNIVPFSLHKDQDQMSVHSLSV 509

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSG-KKGERILDYSGFDQIICKGHCNFIYPAILHADS 18
           E  YISNLSVTNDQVRHKLFSSDPS  KKGERILD+SG D+IIC GHCNFIYPAILH +S
Sbjct: 510 EGRYISNLSVTNDQVRHKLFSSDPSSCKKGERILDFSGPDRIICNGHCNFIYPAILHENS 569

Query: 17  DLLAK 3
           DLLAK
Sbjct: 570 DLLAK 574


>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
           gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
           [Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
           polymerase beta'' subunit protein [Nelumbo nucifera]
           gi|383286787|gb|AFH01437.1| RNA polymerase beta''
           subunit (chloroplast) [Nelumbo nucifera]
           gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 1390

 Score =  222 bits (565), Expect = 5e-56
 Identities = 107/125 (85%), Positives = 113/125 (90%), Gaps = 1/125 (0%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSGSP  S+IVPF LHKDQDQM+VHSLS 
Sbjct: 450 GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGSPCRSNIVPFSLHKDQDQMSVHSLSV 509

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSG-KKGERILDYSGFDQIICKGHCNFIYPAILHADS 18
           E  YISNLSVTNDQVRHKLFSSDPS  KKGERILD+SG D+IIC GHCNFIYPAILH +S
Sbjct: 510 EGRYISNLSVTNDQVRHKLFSSDPSSCKKGERILDFSGPDRIICNGHCNFIYPAILHENS 569

Query: 17  DLLAK 3
           DLLAK
Sbjct: 570 DLLAK 574


>gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]
          Length = 866

 Score =  222 bits (565), Expect = 5e-56
 Identities = 107/125 (85%), Positives = 113/125 (90%), Gaps = 1/125 (0%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSGSP  S+IVPF LHKDQDQM+VHSLS 
Sbjct: 1   GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGSPCRSNIVPFSLHKDQDQMSVHSLSV 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSG-KKGERILDYSGFDQIICKGHCNFIYPAILHADS 18
           E  YISNLSVTNDQVRHKLFSSDPS  KKGERILD+SG D+IIC GHCNFIYPAILH +S
Sbjct: 61  EGRYISNLSVTNDQVRHKLFSSDPSSCKKGERILDFSGPDRIICNGHCNFIYPAILHENS 120

Query: 17  DLLAK 3
           DLLAK
Sbjct: 121 DLLAK 125


>gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]
          Length = 861

 Score =  222 bits (565), Expect = 5e-56
 Identities = 104/124 (83%), Positives = 110/124 (88%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWST+VYHAP+Y YGNVHLLPKTSHLWILSG PY SSIVPF LHKDQDQMNVHS S 
Sbjct: 1   GEMHWSTNVYHAPEYTYGNVHLLPKTSHLWILSGDPYRSSIVPFSLHKDQDQMNVHSFSL 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLSVTNDQVRHKLF SDPSGKK +RILDYSG D+IIC GHCNF YPAILH +S 
Sbjct: 61  ERRYISNLSVTNDQVRHKLFRSDPSGKKEKRILDYSGSDRIICNGHCNFTYPAILHENSY 120

Query: 14  LLAK 3
           L+AK
Sbjct: 121 LVAK 124


>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
           gi|479279193|gb|AGJ72047.1| RNA polymerase beta''
           subunit (chloroplast) [Tetracentron sinense]
          Length = 1378

 Score =  221 bits (563), Expect = 8e-56
 Identities = 105/124 (84%), Positives = 110/124 (88%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSG P  SSIVPF LHKDQDQMNV SLS 
Sbjct: 450 GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPCRSSIVPFSLHKDQDQMNVQSLSV 509

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLSVTNDQV+HKLFS DPSGKKG RILDYS  ++IIC GHCNFIYPAILH +SD
Sbjct: 510 ERRYISNLSVTNDQVKHKLFSLDPSGKKGGRILDYSAPNRIICNGHCNFIYPAILHENSD 569

Query: 14  LLAK 3
           LLAK
Sbjct: 570 LLAK 573


>ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphylla]
           gi|212277016|sp|A6MM26.1|RPOC2_BUXMI RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|146762275|gb|ABQ45239.1| RNA polymerase beta'
           subunit [Buxus microphylla]
          Length = 1391

 Score =  219 bits (557), Expect = 4e-55
 Identities = 103/124 (83%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLW+LSG P  S IVPF LHKDQDQMNVHSLSA
Sbjct: 450 GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWVLSGGPCRSRIVPFSLHKDQDQMNVHSLSA 509

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLS TNDQVRHKLFSSDPSGK+G  ILDYSG ++IIC GH NFIYP ILH +SD
Sbjct: 510 ERRYISNLSATNDQVRHKLFSSDPSGKRGGSILDYSGPNRIICNGHLNFIYPTILHENSD 569

Query: 14  LLAK 3
           LLAK
Sbjct: 570 LLAK 573


>gb|ABD93716.1| RNA polymerase beta chain [Buxus sempervirens]
          Length = 865

 Score =  219 bits (557), Expect = 4e-55
 Identities = 103/124 (83%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLW+LSG P  S IVPF LHKDQDQMNVHSLSA
Sbjct: 1   GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWVLSGGPCRSRIVPFSLHKDQDQMNVHSLSA 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLS TNDQVRHKLFSSDPSGK+G  ILDYSG ++IIC GH NFIYP ILH +SD
Sbjct: 61  ERRYISNLSATNDQVRHKLFSSDPSGKRGGSILDYSGPNRIICNGHLNFIYPTILHENSD 120

Query: 14  LLAK 3
           LLAK
Sbjct: 121 LLAK 124


>ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tulipifera]
           gi|122239950|sp|Q0G9M9.1|RPOC2_LIRTU RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|113200984|gb|ABI32499.1| RNA polymerase beta'
           subunit [Liriodendron tulipifera]
          Length = 1382

 Score =  218 bits (556), Expect = 5e-55
 Identities = 104/124 (83%), Positives = 111/124 (89%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSG P  SSIVPF LHKDQDQMNVHSLS 
Sbjct: 449 GEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILSGGPCRSSIVPFSLHKDQDQMNVHSLSV 508

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YIS+LSVTND+VRHKLFSSDPSGKK ERILDYSG D+I+  GH NF+YPAILH +SD
Sbjct: 509 ERRYISDLSVTNDRVRHKLFSSDPSGKKKERILDYSGPDRIVSNGHWNFLYPAILHENSD 568

Query: 14  LLAK 3
           LLAK
Sbjct: 569 LLAK 572


>gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis]
          Length = 863

 Score =  218 bits (554), Expect = 9e-55
 Identities = 102/124 (82%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWST+VYHAP+Y Y +VHLLPKTSHLWILSG  Y SSIVP  LHKDQDQMNVHSLS 
Sbjct: 1   GEMHWSTNVYHAPEYTYSHVHLLPKTSHLWILSGGSYRSSIVPLSLHKDQDQMNVHSLSV 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISN SVTNDQVRHKLF+S PS KKGERILDYSG D+IIC GHCNFIYP+ILH +SD
Sbjct: 61  ERRYISNFSVTNDQVRHKLFNSYPSSKKGERILDYSGTDRIICNGHCNFIYPSILHENSD 120

Query: 14  LLAK 3
           LLAK
Sbjct: 121 LLAK 124


>ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
           gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|114054374|gb|ABI49768.1| RNA polymerase beta''
           subunit [Platanus occidentalis]
          Length = 1387

 Score =  218 bits (554), Expect = 9e-55
 Identities = 102/124 (82%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWST+VYHAP+Y Y +VHLLPKTSHLWILSG  Y SSIVP  LHKDQDQMNVHSLS 
Sbjct: 450 GEMHWSTNVYHAPEYTYSHVHLLPKTSHLWILSGGSYRSSIVPLSLHKDQDQMNVHSLSV 509

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISN SVTNDQVRHKLF+S PS KKGERILDYSG D+IIC GHCNFIYP+ILH +SD
Sbjct: 510 ERRYISNFSVTNDQVRHKLFNSYPSSKKGERILDYSGTDRIICNGHCNFIYPSILHENSD 569

Query: 14  LLAK 3
           LLAK
Sbjct: 570 LLAK 573


>gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]
          Length = 861

 Score =  216 bits (550), Expect = 3e-54
 Identities = 103/124 (83%), Positives = 110/124 (88%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHA +Y YGNVHLLPKTSHLWILSG+PY SSIVPFLLHKDQDQMNV+SLS 
Sbjct: 1   GEMHWSTDVYHATEYTYGNVHLLPKTSHLWILSGNPYRSSIVPFLLHKDQDQMNVNSLSP 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISN SVTNDQVRHKLF SDPSGKKG+ ILDYS  D+IIC GHCNF YPAILH +S 
Sbjct: 61  ERRYISNPSVTNDQVRHKLFRSDPSGKKGKGILDYSVPDRIICNGHCNFTYPAILHENSA 120

Query: 14  LLAK 3
           L+AK
Sbjct: 121 LVAK 124


>gb|ABD93715.1| RNA polymerase beta chain [Pachysandra procumbens]
          Length = 866

 Score =  214 bits (546), Expect = 8e-54
 Identities = 102/124 (82%), Positives = 107/124 (86%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLW+LSG P  S IVPF LHKDQDQMN HSLSA
Sbjct: 1   GEMHWSTDVYHAPEYTYGNVHLLPKTSHLWVLSGGPCRSRIVPFSLHKDQDQMNGHSLSA 60

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLS TNDQVRHKLFSSDPS KKG RILDYSG ++IIC  H NFIYP ILH +SD
Sbjct: 61  ERRYISNLSATNDQVRHKLFSSDPSDKKGGRILDYSGPNRIICNSHLNFIYPTILHENSD 120

Query: 14  LLAK 3
           LLAK
Sbjct: 121 LLAK 124


>ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
           gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|114054460|gb|ABI49853.1| RNA polymerase beta''
           subunit [Nandina domestica]
          Length = 1377

 Score =  214 bits (544), Expect = 1e-53
 Identities = 102/124 (82%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWST VYHAP+Y YGNVHLLPKTSHLWILSG PY SSIV F LHKDQDQMNVHSLSA
Sbjct: 446 GEMHWSTAVYHAPEYTYGNVHLLPKTSHLWILSGGPYRSSIVSFSLHKDQDQMNVHSLSA 505

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           E+  ISNL VTN+QVRHK  SS+PSGKKGERILDYSG ++IIC GHCNFIYPAILH +S 
Sbjct: 506 EQKSISNLLVTNNQVRHKFLSSEPSGKKGERILDYSGPNRIICNGHCNFIYPAILHENSY 565

Query: 14  LLAK 3
           LLAK
Sbjct: 566 LLAK 569


>ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
           gi|226933872|gb|ACO92005.1| RNA polymerase beta''
           subunit [Megaleranthis saniculifolia]
          Length = 1383

 Score =  213 bits (542), Expect = 2e-53
 Identities = 102/124 (82%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWST VYHAP+Y YGNVHLLPKTSHLWILSG PY SSIVPF LHKDQDQ+N+HSLS+
Sbjct: 446 GEMHWSTAVYHAPEYTYGNVHLLPKTSHLWILSGVPYRSSIVPFSLHKDQDQINIHSLSS 505

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YISNLSVTNDQVRHKLF SDPSGKK ER+L YS  D+II  GHCNFIYPAIL  +SD
Sbjct: 506 ERKYISNLSVTNDQVRHKLFRSDPSGKKRERVLYYSEPDRIIWNGHCNFIYPAILDDNSD 565

Query: 14  LLAK 3
           LLAK
Sbjct: 566 LLAK 569


>ref|YP_008993768.1| RNA polymerase beta' subunit (chloroplast) [Magnolia sinica]
          Length = 1382

 Score =  213 bits (541), Expect = 3e-53
 Identities = 102/124 (82%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSG P  SSIV F LHKDQDQMNVHSLS 
Sbjct: 449 GEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILSGGPCRSSIVTFSLHKDQDQMNVHSLSV 508

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YIS+LSVTND+VRHKLFSSDPS KKG+ ILDYSG D+II  GH NF+YPAILH +SD
Sbjct: 509 ERRYISDLSVTNDRVRHKLFSSDPSSKKGQGILDYSGPDRIISNGHWNFLYPAILHENSD 568

Query: 14  LLAK 3
           LLAK
Sbjct: 569 LLAK 572


>ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia tripetala]
           gi|608608394|gb|AHW51948.1| RNA polymerase beta''
           subunit [Magnolia tripetala]
          Length = 1382

 Score =  212 bits (540), Expect = 4e-53
 Identities = 102/124 (82%), Positives = 109/124 (87%)
 Frame = -2

Query: 374 GEMHWSTDVYHAPKYAYGNVHLLPKTSHLWILSGSPYTSSIVPFLLHKDQDQMNVHSLSA 195
           GEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILSG P  SSIV F LHKDQDQMNVHSLS 
Sbjct: 449 GEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILSGGPCRSSIVTFSLHKDQDQMNVHSLSV 508

Query: 194 ERSYISNLSVTNDQVRHKLFSSDPSGKKGERILDYSGFDQIICKGHCNFIYPAILHADSD 15
           ER YIS+LSVTND+VRHKLFSSDPS KKG+ ILDYSG D+II  GH NF+YPAILH +SD
Sbjct: 509 ERRYISDLSVTNDRVRHKLFSSDPSSKKGKGILDYSGPDRIISNGHWNFLYPAILHENSD 568

Query: 14  LLAK 3
           LLAK
Sbjct: 569 LLAK 572