BLASTX nr result
ID: Sinomenium22_contig00052568
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00052568
(997 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 60 2e-09
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 55 7e-06
gb|ABK28243.1| unknown [Arabidopsis thaliana] 55 7e-06
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 55 7e-06
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 47 1e-05
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 59.7 bits (143), Expect(3) = 2e-09
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Frame = +1
Query: 382 AQSFQMDPVFPTGNSVLISAMSDLNKVQLLDANQEDSILWK---QDKDGKLSLTNVWDII 552
+ S +PV VL SA S L+D +D+ LWK + S + W +
Sbjct: 924 SSSRSRNPVITLLQRVLPSAAS------LIDCPHDDTYLWKIGHHAPSNRFSTADTWSYL 977
Query: 553 RVKRSKDIWHDLLWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 714
+ + +WH +WFK P + + W V +++HT LR G + PT VLC
Sbjct: 978 QPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLC 1031
Score = 26.9 bits (58), Expect(3) = 2e-09
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 191 SWVWRKVLKYKHLLESLILQFKIGNGNSTRLWLD 292
+W+WRK+ K + I+ ++G+G + W D
Sbjct: 852 NWIWRKLCKLRPFARPFII-CEVGSGVTASFWHD 884
Score = 22.3 bits (46), Expect(3) = 2e-09
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 719 LGEDHSHLLFFDCPLSFLVWSVIAR 793
L E HL FF C S +WS R
Sbjct: 1034 LDESREHL-FFRCQFSSEIWSFFMR 1057
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 55.5 bits (132), Expect(2) = 7e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +1
Query: 421 NSVLISAMSDLNKVQ-LLDANQEDSILWKQD---KDGKLSLTNVWDIIRVKRSKDIWHDL 588
N +++ + L + Q LLD +DS LWK D + S W + + WH
Sbjct: 73 NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132
Query: 589 LWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 714
+WFK P ++ + W V +++HT L++ GL+ +LC
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174
Score = 21.9 bits (45), Expect(2) = 7e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 704 MCSAGLGEDHSHLLFFDCPLSFLVW 778
+C+A +D LFF+C S +VW
Sbjct: 173 LCNAH--DDSRAHLFFECQFSGVVW 195
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 55.5 bits (132), Expect(2) = 7e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +1
Query: 421 NSVLISAMSDLNKVQ-LLDANQEDSILWKQD---KDGKLSLTNVWDIIRVKRSKDIWHDL 588
N +++ + L + Q LLD +DS LWK D + S W + + WH
Sbjct: 73 NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132
Query: 589 LWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 714
+WFK P ++ + W V +++HT L++ GL+ +LC
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174
Score = 21.9 bits (45), Expect(2) = 7e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 704 MCSAGLGEDHSHLLFFDCPLSFLVW 778
+C+A +D LFF+C S +VW
Sbjct: 173 LCNAH--DDSRAHLFFECQFSGVVW 195
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 55.5 bits (132), Expect(2) = 7e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +1
Query: 421 NSVLISAMSDLNKVQ-LLDANQEDSILWKQD---KDGKLSLTNVWDIIRVKRSKDIWHDL 588
N +++ + L + Q LLD +DS LWK D + S W + + WH
Sbjct: 73 NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132
Query: 589 LWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 714
+WFK P ++ + W V +++HT L++ GL+ +LC
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174
Score = 21.9 bits (45), Expect(2) = 7e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 704 MCSAGLGEDHSHLLFFDCPLSFLVW 778
+C+A +D LFF+C S +VW
Sbjct: 173 LCNAH--DDSRAHLFFECQFSGVVW 195
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 47.0 bits (110), Expect(2) = 1e-05
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 472 DANQEDSILWKQDKDGKL---SLTNVWDIIRVKRSKDIWHDLLWFKGFSPTNSCLFWRVC 642
++ +DS LW+ L S + W+ IRV W ++WFK + P S + W
Sbjct: 89 ESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSF 148
Query: 643 KDKVHTAMNLRSMGLNDNPTYVLC 714
+++ T LR G+N ++VLC
Sbjct: 149 LERLPTRDRLRGWGMNIPSSWVLC 172
Score = 30.0 bits (66), Expect(2) = 1e-05
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 704 MCSAGLGEDHSHLLFFDCPLSFLVWSVIARNF 799
+CS G E H+HL FF+C S +W A F
Sbjct: 171 LCSNG-DETHAHL-FFECSFSLAIWEFFASKF 200