BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00052549
         (671 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    91   7e-33
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    94   3e-30
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    94   3e-30
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         94   3e-30
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          93   3e-30
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]            93   3e-30
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    92   5e-30
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    92   6e-30
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...    92   6e-30
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      93   8e-30
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      94   1e-29
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...    91   1e-29
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe...    79   3e-29
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]      80   3e-29
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-...    94   3e-29
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 91   4e-29
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                91   4e-29
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    91   5e-29
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    83   1e-28
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    83   3e-28

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 90.5 bits (223), Expect(2) = 7e-33
 Identities = 39/65 (60%), Positives = 52/65 (80%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           +RLGH+ +RG++ L+K+ LL  +K++ L+FC+HCVFGK  R KF KAIHRT+G LDYIHS
Sbjct: 416 IRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHS 475

Query: 181 YVWGP 195
             WGP
Sbjct: 476 DCWGP 480



 Score = 77.0 bits (188), Expect(2) = 7e-33
 Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G R+FVS IDDYSRM WV MMK K+E F+ F      +EN  G+KIKRL+ DNG E+   
Sbjct: 488 GCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWS 547

Query: 393 AFSKWC--EGI 419
            F ++C  EGI
Sbjct: 548 EFDQFCKDEGI 558


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1262

 Score = 94.4 bits (233), Expect(2) = 3e-30
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I+KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 453 MRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 512

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 513 DLWGPA 518



 Score = 64.3 bits (155), Expect(2) = 3e-30
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG ++ S+
Sbjct: 525 GARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSK 584

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 585 IFKSYCKSEGI 595


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 94.4 bits (233), Expect(2) = 3e-30
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I+KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 399 MRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 458

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 459 DLWGPA 464



 Score = 64.3 bits (155), Expect(2) = 3e-30
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG ++ S+
Sbjct: 471 GARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSK 530

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 531 IFKSYCKSEGI 541


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 94.0 bits (232), Expect(2) = 3e-30
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 438 MRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 497

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 498 DLWGPA 503



 Score = 64.7 bits (156), Expect(2) = 3e-30
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F +F      +E    RK+K L+ DNG E+ S+
Sbjct: 510 GARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSK 569

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 570 IFKSYCKSEGI 580


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 93.2 bits (230), Expect(2) = 3e-30
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 330 DLWGPA 335



 Score = 65.5 bits (158), Expect(2) = 3e-30
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG E+ S+
Sbjct: 342 GARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK 401

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 402 IFKSYCKSEGI 412


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score = 93.2 bits (230), Expect(2) = 3e-30
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 330 DLWGPA 335



 Score = 65.5 bits (158), Expect(2) = 3e-30
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG E+ S+
Sbjct: 342 GARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK 401

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 402 IFKSYCKSEGI 412


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 92.4 bits (228), Expect(2) = 5e-30
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 404 MRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 463

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 464 DLWGPA 469



 Score = 65.5 bits (158), Expect(2) = 5e-30
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG E+ S+
Sbjct: 476 GARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK 535

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 536 IFKSYCKSEGI 546


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score = 92.0 bits (227), Expect(2) = 6e-30
 Identities = 40/66 (60%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+++ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 645 MRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 704

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 705 DLWGPA 710



 Score = 65.5 bits (158), Expect(2) = 6e-30
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG E+ S+
Sbjct: 717 GTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK 776

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 777 IFKSYCKSEGI 787


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score = 92.0 bits (227), Expect(2) = 6e-30
 Identities = 40/66 (60%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+++ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 438 MRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 497

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 498 DLWGPA 503



 Score = 65.5 bits (158), Expect(2) = 6e-30
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG E+ S+
Sbjct: 510 GTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK 569

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 570 IFKSYCKSEGI 580


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 93.2 bits (230), Expect(2) = 8e-30
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 347 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 406

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 407 DLWGPA 412



 Score = 63.9 bits (154), Expect(2) = 8e-30
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      +E    RK+K L+ DNG E  S+
Sbjct: 419 GARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSK 478

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 479 IFKSYCKSEGI 489


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 94.0 bits (232), Expect(2) = 1e-29
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 410 MRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 469

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 470 DLWGPA 475



 Score = 62.8 bits (151), Expect(2) = 1e-29
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F+ F      +E    RK+K L+ DNG E+ S+
Sbjct: 482 GARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSK 541

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 542 IFKSYCKSEGI 552


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score = 90.9 bits (224), Expect(2) = 1e-29
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKF  + H T GILDY+HS
Sbjct: 377 MRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHS 436

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 437 DLWGPA 442



 Score = 65.5 bits (158), Expect(2) = 1e-29
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K E F +F      +E    RK+K L+ DNG E+ SR
Sbjct: 449 GARYMMTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSR 508

Query: 393 AFSKWC--EGI 419
            F  +C  EGI
Sbjct: 509 QFKSYCRSEGI 519


>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
           erythrorhizon]
          Length = 244

 Score = 78.6 bits (192), Expect(2) = 3e-29
 Identities = 34/61 (55%), Positives = 44/61 (72%)
 Frame = +3

Query: 204 SKRGSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREY 383
           SK GS YFV+F+DDYSR  W+  +K KNEVF+IF      +EN  GRK+K ++ DNG+EY
Sbjct: 182 SKDGSWYFVTFVDDYSRYAWIYFLKHKNEVFDIFKQWRAMVENRTGRKLKTVRSDNGKEY 241

Query: 384 T 386
           T
Sbjct: 242 T 242



 Score = 77.0 bits (188), Expect(2) = 3e-29
 Identities = 33/66 (50%), Positives = 50/66 (75%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S++GL  L+ QGLL   K   ++FC+H V+GK  R+KF  + H++RG+LDY+H+
Sbjct: 113 MRLGHMSEKGLSLLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHT 172

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 173 DLWGPA 178


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 79.7 bits (195), Expect(2) = 3e-29
 Identities = 41/74 (55%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
 Frame = +3

Query: 204 SKRGSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREY 383
           SK G+RYFVSFIDD+SR VW+  MK+KNEVF  F      + N  GRKIK L+ DNG EY
Sbjct: 468 SKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEY 527

Query: 384 TSRAFSKWC--EGI 419
             + F + C  EGI
Sbjct: 528 RDKKFLQLCKDEGI 541



 Score = 75.5 bits (184), Expect(2) = 3e-29
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = +1

Query: 4   RLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFN--KAIHRTRGILDYIH 177
           RLGH+SQRGL+EL+K+  L       L+FC++C  GKQ RV FN   + ++++G+LDYIH
Sbjct: 398 RLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIH 457

Query: 178 SYVWGPS 198
           + VWGPS
Sbjct: 458 TDVWGPS 464


>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549746|gb|ABA92543.1|
           retrotransposon protein, putative, Ty1-copia subclass,
           expressed [Oryza sativa Japonica Group]
          Length = 1170

 Score = 93.6 bits (231), Expect(2) = 3e-29
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 473 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHNRVKFNTSTHTTEGILDYVHS 532

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 533 NLWGPA 538



 Score = 61.6 bits (148), Expect(2) = 3e-29
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ +DDYSR VW   +K K + F++F      ++    RK+K L+ DNG E  S+
Sbjct: 545 GARYMMTTVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKKQTERKVKILRTDNGMELCSK 604

Query: 393 AFSKW--CEGI 419
            F  +  CEGI
Sbjct: 605 IFKSYCKCEGI 615


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 90.9 bits (224), Expect(2) = 4e-29
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+ +GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 423 MRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 482

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 483 DLWGPA 488



 Score = 63.9 bits (154), Expect(2) = 4e-29
 Identities = 27/72 (37%), Positives = 42/72 (58%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ ++DYSR VW   +K K + F +F      +E    RK+K L+ DNG E+ S+
Sbjct: 495 GARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSK 554

Query: 393 AFSKWCEGIQIM 428
            F  +C+   IM
Sbjct: 555 IFKSYCKSEGIM 566


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 90.9 bits (224), Expect(2) = 4e-29
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+ +GLL    I KL FC+HC+FGK  RVKFN + H T GILDY+HS
Sbjct: 255 MRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 314

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 315 DLWGPA 320



 Score = 63.9 bits (154), Expect(2) = 4e-29
 Identities = 27/72 (37%), Positives = 42/72 (58%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+RY ++ ++DYSR VW   +K K + F +F      +E    RK+K L+ DNG E+ S+
Sbjct: 327 GARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSK 386

Query: 393 AFSKWCEGIQIM 428
            F  +C+   IM
Sbjct: 387 IFKSYCKSEGIM 398


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 90.5 bits (223), Expect(2) = 5e-29
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S+ GL EL+K+GLL    I KL FC+HC+FGK  RVKFN + H T G LDY+HS
Sbjct: 356 MRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGTLDYVHS 415

Query: 181 YVWGPS 198
            +WGP+
Sbjct: 416 DLWGPA 421



 Score = 63.9 bits (154), Expect(2) = 5e-29
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = +3

Query: 213 GSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREYTSR 392
           G+ Y ++ +DDYSR VW   +K K + F++F      +E  I RK+K L+ DNG E+ S+
Sbjct: 428 GACYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQIERKVKILRTDNGMEFCSK 487

Query: 393 AFSKWCE 413
            F  +C+
Sbjct: 488 IFKSYCK 494


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 83.2 bits (204), Expect(2) = 1e-28
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +1

Query: 4   RLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHSY 183
           RLGH+S++GL  L+KQGLL   +  KL FC+ CV GKQ RVKF+   H T G+L+YIHS 
Sbjct: 751 RLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSD 810

Query: 184 VWGPS 198
           +WGPS
Sbjct: 811 LWGPS 815



 Score = 70.1 bits (170), Expect(2) = 1e-28
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
 Frame = +3

Query: 204  SKRGSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGREY 383
            S  G RY+V+FIDD+SR VWV  +K+K+EVF  F      +E   G+ +K L+ DNG E+
Sbjct: 819  SHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEF 878

Query: 384  TSRAFSKWC--EGI 419
             ++ F ++C  EGI
Sbjct: 879  CNKDFDEFCRKEGI 892


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score = 83.2 bits (204), Expect(2) = 3e-28
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +1

Query: 1   MRLGHVSQRGLEELNKQGLLGKNKIEKLDFCKHCVFGKQCRVKFNKAIHRTRGILDYIHS 180
           MRLGH+S  G+ EL K+ LL      K+ FC+HC+FGK  RV+FN ++H T+G LDY+H+
Sbjct: 430 MRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHA 489

Query: 181 YVWGPS 198
            +WGPS
Sbjct: 490 DLWGPS 495



 Score = 68.6 bits (166), Expect(2) = 3e-28
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 PSKRGSRYFVSFIDDYSRMVWVQMMKSKNEVFEIFXXXXXXIENHIGRKIKRLKIDNGRE 380
           PS  G+RY ++ IDDYSR VW   +K K++ F  F      IE    RK+K L+ DNG E
Sbjct: 498 PSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGE 557

Query: 381 YTSRAFSKWC--EGI 419
           + S AF+ +C  EGI
Sbjct: 558 FCSHAFNDYCRQEGI 572