BLASTX nr result
ID: Sinomenium22_contig00046101
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00046101
(1017 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prun... 105 4e-29
ref|XP_007221295.1| hypothetical protein PRUPE_ppa024499mg, part... 97 5e-28
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 108 8e-27
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 107 1e-26
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 106 2e-26
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 105 7e-26
ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, part... 105 2e-25
emb|CAN79389.1| hypothetical protein VITISV_004909 [Vitis vinifera] 109 8e-24
emb|CAN77045.1| hypothetical protein VITISV_035256 [Vitis vinifera] 115 2e-23
emb|CAN79339.1| hypothetical protein VITISV_044312 [Vitis vinifera] 106 3e-23
emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera] 103 3e-22
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 111 5e-22
ref|XP_007221749.1| hypothetical protein PRUPE_ppb022800mg, part... 97 7e-22
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 110 1e-21
ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [The... 95 2e-21
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 109 2e-21
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 109 2e-21
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The... 95 3e-21
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 108 3e-21
ref|XP_007019612.1| Uncharacterized protein TCM_035725 [Theobrom... 94 4e-21
>ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prunus persica]
gi|462402465|gb|EMJ08022.1| hypothetical protein
PRUPE_ppa025991mg [Prunus persica]
Length = 1274
Score = 105 bits (263), Expect(3) = 4e-29
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F +++WK+ L FSSA+ PQTDGQTEV+N SLG+L H LVGD WD L EF +
Sbjct: 962 FWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGDLLHCLVGDKPGNWDLLLPVAEFTY 1021
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLGSVTDHIQLHC--KAEDFVALLQQIHQTTPDHLVA 538
N+++N TG SPF +V+G R P+ V + A F ++Q+H +
Sbjct: 1022 NNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAARSSDSATSFAEHIRQLHDDVRRQISM 1081
Query: 539 ATRKYKAAVDKRRHHVEFEVGD 604
T YK A + R EF GD
Sbjct: 1082 HTDTYKLAANAHRRQQEFREGD 1103
Score = 38.5 bits (88), Expect(3) = 4e-29
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 598 G*FVWAILTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNIS 777
G FV + + FP H + KL R +G II+K+ NAY ++L + + + ++S++S
Sbjct: 1102 GDFVMVRVCPERFPKHSFKKLHARSMGPYRIIKKLGSNAYLIELPANMHISPIFNVSDLS 1161
Score = 32.0 bits (71), Expect(3) = 4e-29
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F E+ RLHGL SIV RD +F+S+F
Sbjct: 937 FKEVVRLHGLLVSIVSDRDFKFVSYF 962
>ref|XP_007221295.1| hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
gi|462417929|gb|EMJ22494.1| hypothetical protein
PRUPE_ppa024499mg, partial [Prunus persica]
Length = 1364
Score = 96.7 bits (239), Expect(3) = 5e-28
Identities = 51/117 (43%), Positives = 69/117 (58%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F +++WK+ L FSSA+ PQTDGQTEV+N SLG+L LVGD WD L EFA+
Sbjct: 1144 FWKTLWKLFGTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPVAEFAY 1203
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLGSVTDHIQLHCKAEDFVALLQQIHQTTPDHLV 535
N++ N TG SPF IVYG++ R P+ I C +E + IH D+++
Sbjct: 1204 NNSANRTTGKSPFEIVYGVMPRPPIDLAPLPIDA-CPSESATTFAEHIHFQEGDYVM 1259
Score = 39.3 bits (90), Expect(3) = 5e-28
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 598 G*FVWAILTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNIS 777
G +V + + FP H + KL R +GL I+ K+ NAY ++L S V +S I N+S
Sbjct: 1255 GDYVMVRVCPERFPKHSFKKLHARSMGLYRILRKLGANAYLVELPSDV---HISPIFNVS 1311
Query: 778 VRF 786
F
Sbjct: 1312 DLF 1314
Score = 36.6 bits (83), Expect(3) = 5e-28
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F E+ RLHGLP SIV RD +F+S+F
Sbjct: 1119 FKEVIRLHGLPVSIVSDRDVKFVSYF 1144
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 108 bits (269), Expect(2) = 8e-27
Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F R++W + +L FS+ PQTDGQTEV+N +L + +++ N+K W++ L EFA+
Sbjct: 681 FWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAY 740
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLG--SVTDHIQLHCKAEDFVALLQQIHQTTPDHLVA 538
NH+ + T PF IVYG++ R P+ + +++ A+ L+ ++H+TT +++
Sbjct: 741 NHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKHRAELMLKLHETTKENIER 800
Query: 539 ATRKYKAAVDKRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLP 667
KYK A K + HV FE GDL L + FP + + L P
Sbjct: 801 MNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLQP 843
Score = 40.0 bits (92), Expect(2) = 8e-27
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F EI RLHG+P +IV RDT+FLSHF
Sbjct: 656 FREIVRLHGVPNTIVSDRDTKFLSHF 681
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 107 bits (267), Expect(2) = 1e-26
Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F R++W + +L FS+ PQTDGQTEV+N +L + +++ N+K W++ L EFA+
Sbjct: 1368 FWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAY 1427
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLG--SVTDHIQLHCKAEDFVALLQQIHQTTPDHLVA 538
N + + T PF IVYG++ R P+ + +++ A+ L+ ++H+TT +++
Sbjct: 1428 NRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENIER 1487
Query: 539 ATRKYKAAVDKRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLP 667
KYK A K + HV FE GDL L + FP + + LLP
Sbjct: 1488 MNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLP 1530
Score = 40.0 bits (92), Expect(2) = 1e-26
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F EI RLHG+P +IV RDT+FLSHF
Sbjct: 1343 FREIVRLHGVPNTIVSDRDTKFLSHF 1368
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 106 bits (265), Expect(2) = 2e-26
Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F R++W + +L FS+ PQTDGQTEV+N +L + +++ N+K W++ L EFA+
Sbjct: 1368 FWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAY 1427
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLG--SVTDHIQLHCKAEDFVALLQQIHQTTPDHLVA 538
N + + T PF IVYG++ R P+ + +++ A+ L+ ++H+TT +++
Sbjct: 1428 NRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIER 1487
Query: 539 ATRKYKAAVDKRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLP 667
KYK A K + HV FE GDL L + FP + + LLP
Sbjct: 1488 MNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLP 1530
Score = 40.0 bits (92), Expect(2) = 2e-26
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F EI RLHG+P +IV RDT+FLSHF
Sbjct: 1343 FREIVRLHGVPNTIVSDRDTKFLSHF 1368
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 105 bits (261), Expect(2) = 7e-26
Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F R++W + + FS+ PQTDGQTEV+N +L + +++ N+K W++ L EFA+
Sbjct: 1368 FWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAY 1427
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLGSVTDHI--QLHCKAEDFVALLQQIHQTTPDHLVA 538
N + + T PF IVYG++ R P+ + +++ A+ L+ ++H+TT +++
Sbjct: 1428 NRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENIER 1487
Query: 539 ATRKYKAAVDKRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLP 667
KYK A K + HV FE GDL L + FP + + LLP
Sbjct: 1488 MNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLP 1530
Score = 40.0 bits (92), Expect(2) = 7e-26
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F EI RLHG+P +IV RDT+FLSHF
Sbjct: 1343 FREIVRLHGVPNTIVSDRDTKFLSHF 1368
>ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
gi|462403623|gb|EMJ09180.1| hypothetical protein
PRUPE_ppa015715mg, partial [Prunus persica]
Length = 1445
Score = 105 bits (262), Expect(2) = 2e-25
Identities = 71/184 (38%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Frame = +2
Query: 74 KTTDAINVAILFF-----LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSA 238
K TDA VA LFF L L S S F F +++WK+ L FSSA
Sbjct: 1096 KNTDASYVAKLFFKEVVRLHGLPVSIVSDRDV-----KFVSYFWKTLWKLFGTTLKFSSA 1150
Query: 239 YDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYG 418
+ PQTDGQTEV+N SLG+L LVGD WD L EFA+N+++N TG SPF +V+G
Sbjct: 1151 FHPQTDGQTEVVNRSLGDLLRCLVGDKPGNWDLLLPVAEFAYNNSVNRSTGKSPFEVVHG 1210
Query: 419 IVLRCPLGSVTDHIQLHC--KAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEF 592
R P+ V + A F ++Q+H + T YK A + R EF
Sbjct: 1211 FSPRSPVDLVALPVAARTSDSATSFAEHIRQLHDDVRRQISMHTDTYKLAANAHRRQQEF 1270
Query: 593 EVGD 604
GD
Sbjct: 1271 REGD 1274
Score = 38.1 bits (87), Expect(2) = 2e-25
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 598 G*FVWAILTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNIS 777
G FV + + FP H + KL R +G II+K+ NAY ++L + + + ++S++S
Sbjct: 1273 GDFVMVRVCPERFPKHSFKKLHARSMGPYRIIKKLGSNAYLIELPADMHISPIFNVSDLS 1332
>emb|CAN79389.1| hypothetical protein VITISV_004909 [Vitis vinifera]
Length = 895
Score = 109 bits (272), Expect(2) = 8e-24
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 2/181 (1%)
Frame = +2
Query: 71 KKTTDAINVAILFFLGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSAYDPQ 250
KK +DA VA LFF + F F F +++W + +L FSS++ PQ
Sbjct: 549 KKASDASYVAALFFKEVVRLHGLPQSIVFYRDVNFMSYFWKTLWAKLGAQLKFSSSFHPQ 608
Query: 251 TDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYGIVLR 430
TDGQTEV+N SLG L +V D ++ WD L Q EFA N + N G SPF + YG+ +
Sbjct: 609 TDGQTEVVNRSLGNLLRCIVRDQLRNWDNVLPQAEFAFNSSTNRTIGHSPFEVAYGLKPK 668
Query: 431 CPLGSV--TDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEFEVGD 604
P+ + + ++ + F ++ IH+ + + + YK A D R +++F+ GD
Sbjct: 669 QPIDLIPLSTSVRTSQDGDAFARHIRDIHEKVREKIKISNENYKEAADAHRRYIQFQEGD 728
Query: 605 L 607
L
Sbjct: 729 L 729
Score = 28.9 bits (63), Expect(2) = 8e-24
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 598 G*FVWAILTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNI 774
G V A L + F Y KL +K G +++ + NAY L+L S L S I N+
Sbjct: 727 GDLVMARLRPERFHPSTYQKLQAKKAGPFRVLKWLGENAYLLELPSN---LHFSPIFNV 782
>emb|CAN77045.1| hypothetical protein VITISV_035256 [Vitis vinifera]
Length = 665
Score = 115 bits (289), Expect = 2e-23
Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Frame = +2
Query: 74 KTTDAINVAILFF-------------LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVN 214
KT DA++VA LFF + + + SYF RS+WKM+N
Sbjct: 461 KTLDAVHVAKLFFKEIVRLHGLPKTIVSDQDAKFMSYFW-------------RSLWKMLN 507
Query: 215 MRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGF 394
+L FSSA+ PQT+GQTEV+N SLG+L LVG++V WDQ L EFA+N ++N TG
Sbjct: 508 TKLKFSSAFHPQTEGQTEVVNRSLGDLLRCLVGEHVSNWDQILPMAEFAYNSSVNRSTGH 567
Query: 395 SPFTIVYGIVLRCPLGSVTDHIQLH--CKAEDFVALLQQIHQTTPDHLVAATRKYKAAVD 568
SPF IV G++ R P+ V ++ +A+ F + +H+ + + YKA D
Sbjct: 568 SPFEIVTGLLPRKPIDLVPLPMEARPSVEADAFSKHILDLHKDVQRKIALSNENYKAQAD 627
Query: 569 KRRHHVEFEVGDL 607
+R +F+ D+
Sbjct: 628 LKRKVADFKERDM 640
>emb|CAN79339.1| hypothetical protein VITISV_044312 [Vitis vinifera]
Length = 354
Score = 106 bits (264), Expect(2) = 3e-23
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Frame = +2
Query: 71 KKTTDAINVAILFF-----LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSS 235
KK +DA V+ LFF L L S S F F +++W + +L FSS
Sbjct: 8 KKASDASYVSALFFKEVVRLHGLPQSIVSDRDV-----KFMSYFWKTLWAKLGTQLKFSS 62
Query: 236 AYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVY 415
++ PQTDGQ EV+N SLG L +V D ++ WD L Q EFA N + N TG+SPF + Y
Sbjct: 63 SFHPQTDGQIEVVNRSLGNLLRCIVRDQLRNWDNVLPQAEFAFNSSTNRTTGYSPFEVAY 122
Query: 416 GIVLRCPLGSVTDHIQLHCK--AEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVE 589
G+ + + + +H + F +Q IH+ + + + YK A D R +++
Sbjct: 123 GLKPKQLVDLIPLPTSVHTSQDGDAFTRHIQDIHENVREKIKISNENYKEAADAHRRYIQ 182
Query: 590 FEVGDL 607
F+ GDL
Sbjct: 183 FQEGDL 188
Score = 30.0 bits (66), Expect(2) = 3e-23
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 598 G*FVWAILTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNI 774
G V L + F Y KL +K G ++++++ NAY L+L S L S I N+
Sbjct: 186 GDLVMVRLRPERFHPSTYQKLQAKKAGPFQVLKRLGENAYLLELPSN---LHFSPIFNV 241
>emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]
Length = 1323
Score = 103 bits (258), Expect(2) = 3e-22
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 15/194 (7%)
Frame = +2
Query: 71 KKTTDAINVAILFF-------------LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMV 211
KKT++A V LFF + N + SYF +++W +
Sbjct: 976 KKTSNASYVTALFFKEVVQLHGLPQSIVSNRDVKFMSYFW-------------KTLWVKL 1022
Query: 212 NMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITG 391
+L FSS++ PQTDGQTEV+N SLG L +V D ++ WD L Q EFA N + N TG
Sbjct: 1023 GTQLKFSSSFHPQTDGQTEVVNRSLGNLLRCIVRDQLRNWDNVLPQAEFAFNSSTNRTTG 1082
Query: 392 FSPFTIVYGIVLRCPLGSV--TDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAV 565
+ PF + YG+ + P+ + ++ + F ++ IH+ + + + YK A
Sbjct: 1083 YLPFEVAYGLKPKQPVDLIPLPTSVRTSQDGDAFARHIRDIHEKVREKIKISNENYKEAX 1142
Query: 566 DKRRHHVEFEVGDL 607
D R +++F+ G L
Sbjct: 1143 DAHRRYIQFQEGGL 1156
Score = 28.9 bits (63), Expect(2) = 3e-22
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 598 G*FVWAILTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNI 774
G V L + F Y KL +K G +++++ NAY L+L S L S I N+
Sbjct: 1154 GGLVMVRLRPERFHPSTYQKLQAKKAGPFRVLKRLGENAYLLELPSN---LXFSPIFNV 1209
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 111 bits (277), Expect = 5e-22
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Frame = +2
Query: 74 KTTDAINVAILFF-------------LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVN 214
KT DA ++A LFF + + T + S+F R++W +
Sbjct: 1303 KTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFW-------------RTLWAKLG 1349
Query: 215 MRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGF 394
+L FS+ PQTDGQTEV+N +L + +++ N+K W++ L EFA+N +++ T
Sbjct: 1350 TKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKM 1409
Query: 395 SPFTIVYGIVLRCP--LGSVTDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVD 568
PF IVYG++ R P L + +L+ A+ L+ ++H+TT +++ KYK A D
Sbjct: 1410 CPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGD 1469
Query: 569 KRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLP 667
K R + FE GDL L + FP + + L+P
Sbjct: 1470 KGRRELTFEPGDLVWLHLRKERFPDLRKSKLMP 1502
Score = 79.3 bits (194), Expect(2) = 8e-16
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Frame = +2
Query: 185 FSRSMWKMVN----MRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQT 352
F+ WK + RL+FS+AY PQTDGQTE +N L ++ H+ V D K WD+ L
Sbjct: 2158 FTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYA 2217
Query: 353 EFAHNHAMNCITGFSPFTIVYGIVLRCPLGSVTDHI-QLHCKAEDFVALLQQIHQTTPDH 529
EF++N++ +P+ +YG R PL + D + + D + + +T D+
Sbjct: 2218 EFSYNNSYQASIQMAPYEALYGRKCRTPL--LWDQVGESQVFGTDILREAEAKVRTIWDN 2275
Query: 530 LVAATRKYKAAVDKRRHHVEFEVGD 604
L A + K+ D RR ++EF V D
Sbjct: 2276 LKVAQSRQKSYADNRRRNLEFAVDD 2300
Score = 32.0 bits (71), Expect(2) = 8e-16
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Frame = +3
Query: 69 ARRLPMRSMWLSSSFWEIY-----RLHGLPTSIVFYRDTRFLSHF 188
AR +P+++ + + E+Y LHG+P IV R+++F SHF
Sbjct: 2118 ARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHF 2162
>ref|XP_007221749.1| hypothetical protein PRUPE_ppb022800mg, partial [Prunus persica]
gi|462418685|gb|EMJ22948.1| hypothetical protein
PRUPE_ppb022800mg, partial [Prunus persica]
Length = 722
Score = 97.1 bits (240), Expect(2) = 7e-22
Identities = 62/172 (36%), Positives = 87/172 (50%)
Frame = +2
Query: 185 FSRSMWKMVNMRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAH 364
F +++WK+ L FSSA+ PQTDGQTEV+N SL +L LVGD WD L EFA+
Sbjct: 417 FWKTLWKLFGTSLKFSSAFHPQTDGQTEVVNRSLRDLLRCLVGDKQGNWDLILPVAEFAY 476
Query: 365 NHAMNCITGFSPFTIVYGIVLRCPLGSVTDHIQLHCKAEDFVALLQQIHQTTPDHLVAAT 544
N++ N TG SPF IVYG++ R P+ I +E + I Q + +T
Sbjct: 477 NNSANRTTGKSPFEIVYGVMPRPPIDLAPLPIDAR-PSESATTFAEHIRQ----KISLST 531
Query: 545 RKYKAAVDKRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLPARLV*SRLLRK 700
Y+ A + R +F+ GD + FP + L + R+LRK
Sbjct: 532 NTYQLAANTHRRTQDFQEGDYVMVRVCPERFPKHSFKKLHARSMGPYRILRK 583
Score = 34.7 bits (78), Expect(2) = 7e-22
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 111 FWEIYRLHGLPTSIVFYRDTRFLSHF 188
F E+ LHGLP SIV RD +F+S+F
Sbjct: 392 FKEVIHLHGLPVSIVSDRDVKFVSYF 417
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 110 bits (274), Expect = 1e-21
Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 2/200 (1%)
Frame = +2
Query: 74 KTTDAINVAILFFLGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSAYDPQT 253
K+ DA NVA LFF + F F R +W + +L FS+ PQT
Sbjct: 1362 KSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQT 1421
Query: 254 DGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYGIVLRC 433
DGQTEV+N SL + +++ +N+K W++ L EFA+N +++ T PF IVYG + R
Sbjct: 1422 DGQTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRA 1481
Query: 434 PLG--SVTDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEFEVGDL 607
P+ + +++ A++ L+ ++H+ T +++ +YK A DK R HV F GDL
Sbjct: 1482 PIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDL 1541
Query: 608 FGLS*LRTVFPPMNTTNLLP 667
L + FP + + L+P
Sbjct: 1542 VWLHLRKDRFPDLRKSKLMP 1561
>ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508700944|gb|EOX92840.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 647
Score = 94.7 bits (234), Expect(2) = 2e-21
Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 7/184 (3%)
Frame = +2
Query: 74 KTTDAINVAILFF-----LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSA 238
KT+DA ++A LFF L + TS S H F R++W+ L +SS
Sbjct: 395 KTSDATHIAELFFCEVVRLHGIPTSIVSDRDVKFMGH-----FWRTLWRKFGTELKYSST 449
Query: 239 YDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYG 418
PQTDGQTEV+N SLG + L+ +N K WD + Q EFA+N+++N +PF + YG
Sbjct: 450 CHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEVAYG 509
Query: 419 IVLRCPLGSV--TDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEF 592
+ + L V ++ + E F +++IH+ L A+ +Y ++ R EF
Sbjct: 510 LKPQHVLDLVPLPQEARVSNEGELFAYHIRKIHEEVKAALKASNAEYSFTANQHRRKQEF 569
Query: 593 EVGD 604
E GD
Sbjct: 570 EEGD 573
Score = 35.8 bits (81), Expect(2) = 2e-21
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +1
Query: 619 LTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNI 774
L ++ FP Y+KL +RK G ++I+KI+ NAY L+ L++S I N+
Sbjct: 579 LRQERFPKGTYHKLKSRKFGPCKVIKKISSNAY---LIELPPELQISPIFNV 627
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 109 bits (273), Expect = 2e-21
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 8/206 (3%)
Frame = +2
Query: 74 KTTDAINVAILFFL------GNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSS 235
KT DA ++A LFF G +T + FL F R++W + +L FS+
Sbjct: 1306 KTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLS------HFWRTLWAKLGTKLLFST 1359
Query: 236 AYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVY 415
PQTDGQTEV+N +L + +++ N+K W+ L EFA+N +++ T PF IVY
Sbjct: 1360 TCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVY 1419
Query: 416 GIVLRCP--LGSVTDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVE 589
G++ R P L + +L+ A L+ ++H+TT +++ +YK A DK R +
Sbjct: 1420 GLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEIN 1479
Query: 590 FEVGDLFGLS*LRTVFPPMNTTNLLP 667
FE GDL L + FP + + LLP
Sbjct: 1480 FEPGDLVWLHLRKERFPELRKSKLLP 1505
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 109 bits (272), Expect = 2e-21
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 15/213 (7%)
Frame = +2
Query: 74 KTTDAINVAILFF-------------LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVN 214
K+ DA+NVA LFF + + T + S+F R +W +
Sbjct: 1347 KSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFW-------------RCLWAKLG 1393
Query: 215 MRLDFSSAYDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGF 394
+L FS+ PQTDGQTEV+N +L + +++ +N K W++ L EFA+N +++ T
Sbjct: 1394 NKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKM 1453
Query: 395 SPFTIVYGIVLRCPLG--SVTDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVD 568
PF IVYG + R P+ + +++ A++ L+ +IH+ T +++ KYK A D
Sbjct: 1454 CPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARD 1513
Query: 569 KRRHHVEFEVGDLFGLS*LRTVFPPMNTTNLLP 667
K R HV F GDL L + FP + + L+P
Sbjct: 1514 KGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMP 1546
>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1452
Score = 94.7 bits (234), Expect(2) = 3e-21
Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 7/184 (3%)
Frame = +2
Query: 74 KTTDAINVAILFF-----LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSA 238
+T+DA ++A LFF L + TS S H F F R++W+ L +SS
Sbjct: 1127 RTSDATHIAELFFREIVILHGIPTSIVSDRHV-----KFMGYFWRTLWRKFGTELKYSST 1181
Query: 239 YDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYG 418
PQTDGQTEV+N SLG + L+ +N K WD + Q EFA+N+++N +PF YG
Sbjct: 1182 CHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYG 1241
Query: 419 IVLRCPLGSV--TDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEF 592
+ + L V ++ + E F +++IH+ L A+ +Y ++ R EF
Sbjct: 1242 LKPQHVLDLVPLPQEARVSNEGELFADQIRKIHEEVKAALKASNAEYSFTANQHRRKQEF 1301
Query: 593 EVGD 604
E GD
Sbjct: 1302 EEGD 1305
Score = 34.7 bits (78), Expect(2) = 3e-21
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 619 LTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKL 729
L ++ FP Y+KL +RK G ++++KI+ NAY ++L
Sbjct: 1311 LRQERFPKGTYHKLKSRKFGPCKVLKKISSNAYLIEL 1347
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 108 bits (270), Expect = 3e-21
Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 2/200 (1%)
Frame = +2
Query: 74 KTTDAINVAILFFLGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSAYDPQT 253
K+ DA NVA LFF + F F R +W + +L FS+ PQT
Sbjct: 1359 KSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQT 1418
Query: 254 DGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYGIVLRC 433
DGQTEV+N SL + +++ N+K W++ L EFA+N +++ T PF IVYG + R
Sbjct: 1419 DGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRA 1478
Query: 434 PLG--SVTDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEFEVGDL 607
P+ + +++ A++ L+ ++H+ T +++ +YK A DK R HV F GDL
Sbjct: 1479 PIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDL 1538
Query: 608 FGLS*LRTVFPPMNTTNLLP 667
L + FP + + L+P
Sbjct: 1539 VWLHLRKDRFPDLRKSKLMP 1558
>ref|XP_007019612.1| Uncharacterized protein TCM_035725 [Theobroma cacao]
gi|508724940|gb|EOY16837.1| Uncharacterized protein
TCM_035725 [Theobroma cacao]
Length = 499
Score = 93.6 bits (231), Expect(2) = 4e-21
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 7/184 (3%)
Frame = +2
Query: 74 KTTDAINVAILFF-----LGNLSTSWASYFHCFLP*HAFP*PFSRSMWKMVNMRLDFSSA 238
+T+DA ++A LFF L + TS S H F R++W+ L +SS
Sbjct: 174 RTSDATHIAELFFREIVRLHGIPTSIVSDRDVKFMGH-----FWRTLWRKFGTELKYSST 228
Query: 239 YDPQTDGQTEVINLSLGELFHSLVGDNVKRWDQKLCQTEFAHNHAMNCITGFSPFTIVYG 418
PQTDGQTEV+N SLG + L+ +N K WD + Q EFA+N+++N +PF + YG
Sbjct: 229 CHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEVAYG 288
Query: 419 IVLRCPLGSV--TDHIQLHCKAEDFVALLQQIHQTTPDHLVAATRKYKAAVDKRRHHVEF 592
+ + L V ++ + E F +++IH+ L A+ +Y ++ R EF
Sbjct: 289 LKPQHVLDLVPLPQEARVSNEGELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEF 348
Query: 593 EVGD 604
E GD
Sbjct: 349 EEGD 352
Score = 35.4 bits (80), Expect(2) = 4e-21
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +1
Query: 619 LTKDCFPTHEYNKLVTRKIGLVEIIEKINPNAYRLKLLSTVRALRMSSISNI 774
L ++ FP Y+KL +RK G ++++KI+ NAY L+ L++S I NI
Sbjct: 358 LRQERFPKGTYHKLKSRKFGPCKVLKKISSNAY---LIELPPELQISHIFNI 406