BLASTX nr result
ID: Sinomenium22_contig00043836
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00043836
(478 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 49 3e-09
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 48 2e-08
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 54 2e-08
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 47 7e-08
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 47 8e-08
gb|AAF81336.1|AC007767_16 Strong similarity to a putative non-LT... 41 2e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 41 3e-07
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 47 6e-07
ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arab... 48 6e-07
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 40 1e-06
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 44 2e-06
emb|CAB86676.1| putative protein [Arabidopsis thaliana] 43 2e-06
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 39 3e-06
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 56 4e-06
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 45 6e-06
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 42 6e-06
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 42 6e-06
gb|ABK28243.1| unknown [Arabidopsis thaliana] 42 6e-06
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 42 6e-06
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 41 8e-06
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 49.3 bits (116), Expect(2) = 3e-09
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
FS R W IR +PT W ++WF ++IP++S++ W ++++ T ++L
Sbjct: 109 FSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRL 158
Score = 37.7 bits (86), Expect(2) = 3e-09
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSP 388
+ C G ET HLFF+CSFS IW K SP
Sbjct: 170 VLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSP 204
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 47.8 bits (112), Expect(2) = 2e-08
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 69 RAIDQSLSGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
R++ + F + WN +R P + W+ +WFP PKYS L+W +++ST +++
Sbjct: 1326 RSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRI 1385
Score = 36.6 bits (83), Expect(2) = 2e-08
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 239 GEALQA*DH*QQVLHLFCWTGKETLDHLFFKCSFSNVIWRSVCKK 373
G+ ++A + Q V C +ET DHLFF C +++ +W ++ ++
Sbjct: 1382 GDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQR 1426
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 53.5 bits (127), Expect(2) = 2e-08
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
FS R WN IR W+ +WF Q PK+S +W A+D++ST +++ K + + S
Sbjct: 1262 FSTRDTWNNIRTTATKVTWYKGVWFYQATPKFSFCVWLAALDRLSTGDRMANWKGVSSGS 1321
Query: 279 CTF 287
C F
Sbjct: 1322 CVF 1324
Score = 30.4 bits (67), Expect(2) = 2e-08
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCK 370
+FC ++ DHLFF C +S+ +W K
Sbjct: 1323 VFCNHPTKSRDHLFFNCPYSSEVWTVTAK 1351
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 47.4 bits (111), Expect(2) = 7e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 78 DQSLSGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKL 257
+ S G FS W IR + W+ +WFP PKYS + W ++++T ++L+K
Sbjct: 254 EDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKW 313
Query: 258 KIIDNKSCTF 287
+C F
Sbjct: 314 NSEARATCVF 323
Score = 34.7 bits (78), Expect(2) = 7e-08
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCK 370
+FC ET DHLFF C +S+ IW ++ K
Sbjct: 322 VFCDEELETRDHLFFSCPYSSQIWIALAK 350
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 47.4 bits (111), Expect(2) = 8e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 78 DQSLSGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKL 257
+ S G FS W IR + W+ +WFP PKYS + W ++++T ++L+K
Sbjct: 86 EDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKW 145
Query: 258 KIIDNKSCTF 287
+C F
Sbjct: 146 NSEARATCVF 155
Score = 34.7 bits (78), Expect(2) = 8e-08
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCK 370
+FC ET DHLFF C +S+ IW ++ K
Sbjct: 154 VFCDEELETRDHLFFSCPYSSQIWIALAK 182
>gb|AAF81336.1|AC007767_16 Strong similarity to a putative non-LTR retroelement reverse
transcriptase At2g23880 gi|3738337 from Arabidopsis
thaliana BAC F27L4 gb|AC005170 [Arabidopsis thaliana]
Length = 206
Score = 40.8 bits (94), Expect(2) = 2e-07
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
FS + WN+IR + + W + +WF PK+S W +++S ++++ +
Sbjct: 47 FSTKDTWNHIRTSSNQRAWHTGVWFAHATPKFSFCAWLAVRNRLSMVDRMMTWNNGTPTT 106
Query: 279 CTF 287
C F
Sbjct: 107 CVF 109
Score = 39.7 bits (91), Expect(2) = 2e-07
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSPCSSN 400
+FC + ET DHLFF+C +S+ IW S+ K + S++
Sbjct: 108 VFCSSPMETRDHLFFQCHYSSEIWTSIAKNVYKDGFSTD 146
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 40.8 bits (94), Expect(2) = 3e-07
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
FS + WN+IR + + W +WF PK+S W +++ST +++ +
Sbjct: 760 FSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTT 819
Query: 279 CTF 287
C F
Sbjct: 820 CVF 822
Score = 39.3 bits (90), Expect(2) = 3e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCK 370
+FC + ET DHLFF+C +S+ IW S+ K
Sbjct: 821 VFCSSPMETRDHLFFQCCYSSEIWTSIAK 849
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 46.6 bits (109), Expect(2) = 6e-07
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 66 DRAI----DQSLSGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVS 233
DRA+ + IFS + WN+IR + W+ +WF Q IPK++ MW +++S
Sbjct: 272 DRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRLS 331
Query: 234 TMEKL 248
T +++
Sbjct: 332 TGDRM 336
Score = 32.3 bits (72), Expect(2) = 6e-07
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSPCSSNN*KGILRLIARDY 439
+ C E+ DHLFF C F+ IW + K + C + + I+ ++R++
Sbjct: 348 ILCNKALESRDHLFFSCPFATEIWEPLA-KTIYNTCFYTDWQTIINNVSRNW 398
>ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arabidopsis lyrata subsp.
lyrata] gi|297311371|gb|EFH41795.1| hypothetical protein
ARALYDRAFT_917542 [Arabidopsis lyrata subsp. lyrata]
Length = 227
Score = 47.8 bits (112), Expect(2) = 6e-07
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVST 236
F+ R WN +R W + +WFPQ +P+YS ++W D++ST
Sbjct: 63 FTSRHTWNLLRKAKHKVLWHNSVWFPQRVPRYSFIVWLAVKDQLST 108
Score = 31.2 bits (69), Expect(2) = 6e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKK 373
+FC E+ DHLFF C F+ IW + +
Sbjct: 122 VFCRERDESRDHLFFACPFTYSIWSELTSR 151
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
FS R W++ R + W +IWF PKYS W A ++ T +++
Sbjct: 1038 FSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATD 1097
Query: 279 CTFFAGQVK 305
C F G ++
Sbjct: 1098 CIFCQGTLE 1106
Score = 37.7 bits (86), Expect(2) = 1e-06
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIW 355
+FC ET DHLFF CSF++VIW
Sbjct: 1099 IFCQGTLETRDHLFFTCSFTSVIW 1122
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 44.3 bits (103), Expect(2) = 2e-06
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 66 DRAIDQSLSGIFSFR----SAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVS 233
DR++ +S+ G F + W+ IR + K W IWF PK++ + W A D+++
Sbjct: 1206 DRSLCRSIGGQFKAKFFSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLT 1265
Query: 234 TMEKL 248
T +K+
Sbjct: 1266 TGDKM 1270
Score = 33.1 bits (74), Expect(2) = 2e-06
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSPCSSNN*KGILRLIARDY 439
+ C E+ DHLFF C+FS+ IW + ++ ++N +L L +D+
Sbjct: 1282 VLCNISAESRDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLLSGQDF 1333
>emb|CAB86676.1| putative protein [Arabidopsis thaliana]
Length = 534
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
FS + + IR NP + +WFP PKYS + W ++++T EKL K N
Sbjct: 86 FSSKDILHAIRVPNPICELYKGVWFPNSTPKYSFITWIAFRNRLATGEKLVKWNNDANGG 145
Query: 279 CTF 287
C+F
Sbjct: 146 CSF 148
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 287 FCWTGKETLDHLFFKCSFSNVIWRSVCK 370
FC ET +H+FF C +S+ +W ++ K
Sbjct: 148 FCDEAMETREHIFFSCPYSSAVWSALTK 175
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 38.9 bits (89), Expect(2) = 3e-06
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
FS + WN R W +WF PK+S +W D++ST +K+
Sbjct: 1264 FSTKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKM 1313
Score = 37.7 bits (86), Expect(2) = 3e-06
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSPCSSN 400
L C E+ DHLFF CSFS+ +W K +S S++
Sbjct: 1325 LLCRNATESRDHLFFSCSFSSEVWEMSAKSIYKSSYSTD 1363
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 56.2 bits (134), Expect = 4e-06
Identities = 29/99 (29%), Positives = 48/99 (48%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
FS ++ WNY+R + W +WFP PKYS +W A D+++T ++ K +
Sbjct: 593 FSTKNTWNYLRTTSNEVAWHKGVWFPHATPKYSFCLWLAAHDRLATGARMIKWNRGETGD 652
Query: 279 CTFFAGQVKKL*TTYFLNAHSQMSSGDLFVRKLLNHLAL 395
CTF ++ +F+ H + S D ++ L H L
Sbjct: 653 CTFCRQGIETRDHLFFMQLH--IGSLDSSCQRRLQHKPL 689
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 45.1 bits (105), Expect(2) = 6e-06
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 90 SGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
S FS W+Y++ + + W +WF H+PK + + W VA +++ T ++L
Sbjct: 965 SNRFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRL 1017
Score = 30.4 bits (67), Expect(2) = 6e-06
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 305 ETLDHLFFKCSFSNVIWRSVCKKASQSP 388
E+ +HLFF+C FS+ IW + + +P
Sbjct: 1036 ESREHLFFRCQFSSEIWSFFMRALNLNP 1063
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
hypothetical protein At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 41.6 bits (96), Expect(2) = 6e-06
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 99 FSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKLFKLKIIDNKS 278
F + W+ IR+ P + IWF PKY++L W + ++++T EK+ + S
Sbjct: 198 FLSKETWSQIRNTQPEMQGYRGIWFSNATPKYALLTWLMVRNRIATGEKMGLWNQNTDTS 257
Query: 279 CTF 287
C F
Sbjct: 258 CIF 260
Score = 33.9 bits (76), Expect(2) = 6e-06
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSPCSSNN*KGILRLIARDY 439
+FC ET +HLFF+C ++ +W + K S IL L +D+
Sbjct: 259 IFCKNPNETREHLFFQCVYTRKVWNGLIKGLLLDKYSDRWQDIILMLTRKDF 310
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 42.4 bits (98), Expect(2) = 6e-06
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 90 SGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
S FS W+ + ++ T W +WF H+PK++ + W VA +++ T ++L
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRL 160
Score = 33.1 bits (74), Expect(2) = 6e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSP 388
L C ++ HLFF+C FS V+WR + +P
Sbjct: 172 LLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP 206
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 42.4 bits (98), Expect(2) = 6e-06
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 90 SGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
S FS W+ + ++ T W +WF H+PK++ + W VA +++ T ++L
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRL 160
Score = 33.1 bits (74), Expect(2) = 6e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSP 388
L C ++ HLFF+C FS V+WR + +P
Sbjct: 172 LLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP 206
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 42.4 bits (98), Expect(2) = 6e-06
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 90 SGIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
S FS W+ + ++ T W +WF H+PK++ + W VA +++ T ++L
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRL 160
Score = 33.1 bits (74), Expect(2) = 6e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSP 388
L C ++ HLFF+C FS V+WR + +P
Sbjct: 172 LLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP 206
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 41.2 bits (95), Expect(2) = 8e-06
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 93 GIFSFRSAWNYIRHKNPTKWWWSIIWFPQHIPKYSILMWKVAIDKVSTMEKL 248
G+FS W P W+ +WF + IPK++ + W V ++++T ++L
Sbjct: 93 GVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWVVIRNRLTTRDRL 144
Score = 33.9 bits (76), Expect(2) = 8e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 284 LFCWTGKETLDHLFFKCSFSNVIWRSVCKKASQSP 388
L C + E+ HLFF+C++S+ +W S S SP
Sbjct: 156 LLCTSSAESRLHLFFECAYSHEVWSSFFTHPSLSP 190