BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00042255
         (750 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   169   2e-50
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   152   1e-45
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   152   1e-45
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   145   5e-44
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   136   8e-41
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   137   1e-40
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           134   9e-40
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   130   7e-39
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   130   2e-38
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   128   6e-38
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   126   7e-37
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   118   1e-34
gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Tritic...   105   1e-31
gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilo...   102   8e-31
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   108   2e-30
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   106   7e-30
dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]     99   1e-29
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   113   1e-29
gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japo...    99   1e-29
ref|NP_001062556.1| Os09g0103500 [Oryza sativa Japonica Group] g...    99   1e-29

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  169 bits (427), Expect(2) = 2e-50
 Identities = 87/161 (54%), Positives = 114/161 (70%)
 Frame = -3

Query: 571 SFLSDHFAQFATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRND 392
           S L    + FAT+     E  ++K  KGKW TLPAFTP V A+S+ K LS  R   N  +
Sbjct: 29  SALDQQRSCFATSNDAVSEAHKSK--KGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGN 86

Query: 391 ETTSTTMKALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVS 212
            T   +  ALKWV+ CCP+LPRSLVQKLFRLRQVRRES+N  + S+ G+++QEHRL+RV+
Sbjct: 87  TTAGASTTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYN-MITSDIGVQNQEHRLKRVA 145

Query: 211 AKDGMNVGDIICLPVTVQEFPSEKQDCPCNEDEIKYIRALK 89
           AKD MN+GD I LP+TV+EFPSEK +  CN++EI ++  L+
Sbjct: 146 AKDLMNLGDQILLPITVEEFPSEKHEYHCNDEEINFVHNLE 186



 Score = 57.8 bits (138), Expect(2) = 2e-50
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPG+PVQGGIGI +SLD
Sbjct: 185 LELYKDPAIIVVNKPPGLPVQGGIGIKRSLD 215


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395210|gb|EMJ01009.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  152 bits (383), Expect(2) = 1e-45
 Identities = 87/178 (48%), Positives = 119/178 (66%), Gaps = 13/178 (7%)
 Frame = -3

Query: 583 ICNSSFLSDHFAQFATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSR--- 413
           +C S+F   ++  +ATT     E+RE + EK  W TLP FT T++ +++ KELSR+R   
Sbjct: 22  LCISAF--HNWRSYATTETFH-EDREKRGEK--WFTLPPFTATINGSALGKELSRNRSYG 76

Query: 412 ---LVENRNDETTSTTMKALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIK 242
              + +     TTSTT  ALKWV  CCP LPRSLVQKLFRLRQVRRES +    S  G++
Sbjct: 77  RDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDME-CSGEGVE 135

Query: 241 SQEHRLRRVSAKDGMNVGDIICLPVTVQEFPSEKQ-------DCPCNEDEIKYIRALK 89
           + E  L+RV+AKD MNVGD I LP++VQEFP++KQ       +C C+E+E+ +IR+L+
Sbjct: 136 ALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLE 193



 Score = 58.5 bits (140), Expect(2) = 1e-45
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIV+NKPPGMPVQGGIGI +SLD
Sbjct: 192 LELYKDPAIIVINKPPGMPVQGGIGIKRSLD 222


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395209|gb|EMJ01008.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  152 bits (383), Expect(2) = 1e-45
 Identities = 87/178 (48%), Positives = 119/178 (66%), Gaps = 13/178 (7%)
 Frame = -3

Query: 583 ICNSSFLSDHFAQFATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSR--- 413
           +C S+F   ++  +ATT     E+RE + EK  W TLP FT T++ +++ KELSR+R   
Sbjct: 22  LCISAF--HNWRSYATTETFH-EDREKRGEK--WFTLPPFTATINGSALGKELSRNRSYG 76

Query: 412 ---LVENRNDETTSTTMKALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIK 242
              + +     TTSTT  ALKWV  CCP LPRSLVQKLFRLRQVRRES +    S  G++
Sbjct: 77  RDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDME-CSGEGVE 135

Query: 241 SQEHRLRRVSAKDGMNVGDIICLPVTVQEFPSEKQ-------DCPCNEDEIKYIRALK 89
           + E  L+RV+AKD MNVGD I LP++VQEFP++KQ       +C C+E+E+ +IR+L+
Sbjct: 136 ALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLE 193



 Score = 58.5 bits (140), Expect(2) = 1e-45
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIV+NKPPGMPVQGGIGI +SLD
Sbjct: 192 LELYKDPAIIVINKPPGMPVQGGIGIKRSLD 222


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  145 bits (366), Expect(2) = 5e-44
 Identities = 80/150 (53%), Positives = 103/150 (68%)
 Frame = -3

Query: 538 TTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALK 359
           TT   S+   EN  ++GKW TLP +T T++ + +   LS +R+      ETT     ALK
Sbjct: 41  TTNTKSQNHYEND-KRGKWFTLPPYTSTINGSVLGIALS-ARIPAKSASETT-----ALK 93

Query: 358 WVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDII 179
           WVL CCP LPR+LVQKLFRLRQVRRES     + N G + QEHRL+RV+AKD M+VGD I
Sbjct: 94  WVLRCCPELPRNLVQKLFRLRQVRRES-PVMESCNLGDQGQEHRLKRVAAKDSMDVGDRI 152

Query: 178 CLPVTVQEFPSEKQDCPCNEDEIKYIRALK 89
            LP++V+  P+EKQDC CNE+EI +IR L+
Sbjct: 153 FLPISVKVLPAEKQDCHCNEEEINFIRGLE 182



 Score = 59.7 bits (143), Expect(2) = 5e-44
 Identities = 27/31 (87%), Positives = 30/31 (96%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD+AIIVVNKPPGMPVQGGIGI +SLD
Sbjct: 181 LELYKDAAIIVVNKPPGMPVQGGIGIKRSLD 211


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score =  136 bits (343), Expect(2) = 8e-41
 Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
 Frame = -3

Query: 544 FATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKA 365
           +ATT   ++    N+ EK KWLTLP FT  V+ A++ +EL+  ++  N N   ++ TM A
Sbjct: 38  YATTVTDAQVCNRNENEKAKWLTLPPFTAAVNGAALGRELAGVKMDVNEN---STNTMTA 94

Query: 364 LKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGD 185
           LKWV  CCP LP+SLVQKLFRLRQVRR+S N           +E R +RVSAK+ MNVGD
Sbjct: 95  LKWVQRCCPELPKSLVQKLFRLRQVRRDSSN----------VEEQRPKRVSAKESMNVGD 144

Query: 184 IICLPVTVQEFPSEK-QDCPCNEDEIKYIRALK 89
            I LP+TVQ+FPSEK    P +E+E K++ +L+
Sbjct: 145 RIFLPITVQKFPSEKVVYYPSSEEERKFVHSLE 177



 Score = 57.8 bits (138), Expect(2) = 8e-41
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD+ IIVVNKPPGMPVQGGIGI +SLD
Sbjct: 176 LELYKDAEIIVVNKPPGMPVQGGIGIKRSLD 206


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score =  137 bits (345), Expect(2) = 1e-40
 Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
 Frame = -3

Query: 544 FATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKA 365
           +ATT   ++    N+ EK KWLTLP FT TV+ A++ +EL+  ++    N   ++ TM A
Sbjct: 38  YATTVTAAQVCNRNENEKAKWLTLPPFTATVNGAALGRELAGVKMDVKEN---STNTMTA 94

Query: 364 LKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGD 185
           LKWV  CCP LP+SLVQKLFRLRQVRR+S N           +E R +RVSAK+ MNVGD
Sbjct: 95  LKWVQRCCPELPKSLVQKLFRLRQVRRDSSN----------VEEQRPKRVSAKESMNVGD 144

Query: 184 IICLPVTVQEFPSEK-QDCPCNEDEIKYIRALK 89
            I LP+TVQ+FPSEK    P +E+E K++ +L+
Sbjct: 145 RIFLPITVQKFPSEKVVYYPSSEEERKFVHSLE 177



 Score = 56.6 bits (135), Expect(2) = 1e-40
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD  I+VVNKPPGMPVQGGIGI +SLD
Sbjct: 176 LELYKDPEIVVVNKPPGMPVQGGIGIKRSLD 206


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  134 bits (338), Expect(2) = 9e-40
 Identities = 71/134 (52%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
 Frame = -3

Query: 487 KWLTLPAFTPTVHAASVAKELSRSRLVENRNDETT-STTMKALKWVLHCCPRLPRSLVQK 311
           KW TLP  T TV  A + K ++ ++  + +  + + S    ALKWV+ CCP LPRSLVQK
Sbjct: 48  KWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQK 107

Query: 310 LFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDIICLPVTVQEFPSEKQDC 131
           LFRLRQVRRESFN     N G +  + RLRRVSAKD +N+GD I LP++V+E P EK++C
Sbjct: 108 LFRLRQVRRESFN-VEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELPVEKKEC 166

Query: 130 PCNEDEIKYIRALK 89
            CNE+E+K+IR+L+
Sbjct: 167 FCNEEEVKFIRSLE 180



 Score = 56.2 bits (134), Expect(2) = 9e-40
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AI+VVNKPPG+PVQGGIGI  SLD
Sbjct: 179 LELYKDPAIVVVNKPPGLPVQGGIGIKTSLD 209


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  130 bits (328), Expect(2) = 7e-39
 Identities = 77/178 (43%), Positives = 98/178 (55%), Gaps = 9/178 (5%)
 Frame = -3

Query: 595 FASTIC--NSSFLSDHFAQFATTAICSKEE-------RENKPEKGKWLTLPAFTPTVHAA 443
           F S +C  N      H+  F TT I   +        + N    GK+ TLP +T T+  +
Sbjct: 84  FQSLLCISNRCIFQSHY--FTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGS 141

Query: 442 SVAKELSRSRLVENRNDETTSTTMKALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTV 263
           ++ K LS +   +       ST   ALKWVL CCP LPR+LVQKLFRLRQV+RE  N   
Sbjct: 142 ALGKALSATATAK------ASTETTALKWVLRCCPELPRNLVQKLFRLRQVKRELLN--- 192

Query: 262 ASNFGIKSQEHRLRRVSAKDGMNVGDIICLPVTVQEFPSEKQDCPCNEDEIKYIRALK 89
               G    EH+ +RV+AKD MNVGD I LP++VQ  P EKQ C C E E  +IR L+
Sbjct: 193 ---VGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQKCHCGEKEANFIRGLE 247



 Score = 57.0 bits (136), Expect(2) = 7e-39
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPGMPVQGGIGI  S D
Sbjct: 246 LELYKDEAIIVVNKPPGMPVQGGIGIKSSFD 276


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
           gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
           synthase, putative [Theobroma cacao]
          Length = 477

 Score =  130 bits (327), Expect(2) = 2e-38
 Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 6/186 (3%)
 Frame = -3

Query: 628 RASLRSSKK--TDFASTICNSSFLSDHFAQFATTAICSKEEREN----KPEKGKWLTLPA 467
           R  LRSS+   T   + +  S+F    +    T  + ++  +++    K +K KW TLP 
Sbjct: 9   RRLLRSSRPPATHGGNGLIVSAFHQLRYHYSTTNELSAEHLKDDGNSEKKKKNKWFTLPP 68

Query: 466 FTPTVHAASVAKELSRSRLVENRNDETTSTTMKALKWVLHCCPRLPRSLVQKLFRLRQVR 287
           FT TV+A+ +  +LS     +  N+ T      A+KWV+ CCP LPRSLVQKLFRLRQVR
Sbjct: 69  FTKTVNASVLGAKLSGKPHSKAANETT------AVKWVMRCCPELPRSLVQKLFRLRQVR 122

Query: 286 RESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDIICLPVTVQEFPSEKQDCPCNEDEIK 107
           RES    VA + G + Q  +L+RV AKD +N+GD I LP +V+EF  EKQ+  C E+E+ 
Sbjct: 123 RESHVLEVAGD-GCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEKQESGCTEEELN 181

Query: 106 YIRALK 89
           +IR L+
Sbjct: 182 FIRGLE 187



 Score = 55.8 bits (133), Expect(2) = 2e-38
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIV+NKPPGMPVQGGIGI  SLD
Sbjct: 186 LELYKDPAIIVLNKPPGMPVQGGIGIKWSLD 216


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
           gi|557524859|gb|ESR36165.1| hypothetical protein
           CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  128 bits (322), Expect(2) = 6e-38
 Identities = 66/146 (45%), Positives = 96/146 (65%)
 Frame = -3

Query: 526 CSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALKWVLH 347
           C      +   +GKW TLP FT T+  +++ ++L+     ++   ETT     ALKWVL 
Sbjct: 67  CDDNNNGDDERRGKWFTLPPFTSTIDGSALGRQLACPS--KSPISETT-----ALKWVLQ 119

Query: 346 CCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDIICLPV 167
           CCP LPR+ VQKLFRL QVRRES +   ++N G   QE +L+RV+AKD + +GD I LP+
Sbjct: 120 CCPGLPRNFVQKLFRLSQVRRESPSLDSSANEG-HEQEIKLKRVAAKDSLKLGDRIFLPI 178

Query: 166 TVQEFPSEKQDCPCNEDEIKYIRALK 89
           ++QE PS K+ CPC E+E+ +I++L+
Sbjct: 179 SIQESPSRKEKCPCTEEEVGFIQSLE 204



 Score = 56.2 bits (134), Expect(2) = 6e-38
 Identities = 25/31 (80%), Positives = 29/31 (93%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKDSAIIV+NKP GMPVQGGIGI +S+D
Sbjct: 203 LELYKDSAIIVINKPHGMPVQGGIGIRRSID 233


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 476

 Score =  126 bits (317), Expect(2) = 7e-37
 Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 4/158 (2%)
 Frame = -3

Query: 553 FAQFATTAICSKEERENKPEKG-KWLTLPAFTPTVHAASVAKELSRS--RLVENRNDETT 383
           F  ++TT    +   E+K ++G KW TLP FT TV+ A++ +ELSRS  R V  +     
Sbjct: 32  FRSYSTT----QTVHEDKQKRGNKWFTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAA 87

Query: 382 STTMKALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKD 203
           +TT  ALKWV  CCP +PR+LVQKLFRLRQVRRE+ +        +      L+RV  KD
Sbjct: 88  ATT--ALKWVTRCCPEIPRNLVQKLFRLRQVRREASD--------MDQSVQPLKRVGTKD 137

Query: 202 GMNVGDIICLPVTVQEFPSEKQ-DCPCNEDEIKYIRAL 92
            MN+GD ICLP++V+EFP  KQ +  C+E+E ++IR+L
Sbjct: 138 SMNLGDRICLPISVKEFPDHKQKEGHCSEEEAEFIRSL 175



 Score = 54.7 bits (130), Expect(2) = 7e-37
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           L +YKD AIIV+NKPPG+PVQGGIGI +SLD
Sbjct: 175 LVLYKDPAIIVINKPPGLPVQGGIGIKRSLD 205


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
           gi|548850328|gb|ERN08832.1| hypothetical protein
           AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  118 bits (296), Expect(2) = 1e-34
 Identities = 69/154 (44%), Positives = 98/154 (63%)
 Frame = -3

Query: 550 AQFATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTM 371
           A  +TTA  S EE +    + KW TLP+F      AS++  +S ++  +       STT 
Sbjct: 29  ASLSTTA--SLEEDKEVRRQCKWFTLPSFP----GASLSPSISTAKTAK-----APSTT- 76

Query: 370 KALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNV 191
            ALKWVL CCP++PRSL+QKLFRLRQVR+ES N  +AS    ++Q  +++RV AKD +N 
Sbjct: 77  -ALKWVLRCCPQVPRSLIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAKDTLNS 135

Query: 190 GDIICLPVTVQEFPSEKQDCPCNEDEIKYIRALK 89
           GD I LP+TV      + D  CN++E++YIR+L+
Sbjct: 136 GDRIFLPITVNPAVEVEDDYICNKEEMEYIRSLE 169



 Score = 55.5 bits (132), Expect(2) = 1e-34
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LEVYKD+AI+VVNKPPG+PVQGG G+  SLD
Sbjct: 168 LEVYKDAAIVVVNKPPGLPVQGGTGVKLSLD 198


>gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Triticum urartu]
          Length = 468

 Score =  105 bits (262), Expect(2) = 1e-31
 Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
 Frame = -3

Query: 532 AICSKEERENKPEKG---KWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKAL 362
           A+ S  E   +P+KG   +W+ LP FTP V AA+ A+ + R +  +     + ST   A+
Sbjct: 35  ALDSTSEESGRPDKGNKNRWMELPPFTP-VDAAAAARAIFRGQGGDEIEGSSNST---AI 90

Query: 361 KWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDI 182
           +WV  CCP LP SLVQKLFRLR+V++ +  +  +S     +++ RLRRVSAKD +  GD 
Sbjct: 91  RWVRRCCPHLPASLVQKLFRLRKVKKNAVTAETSST-DASAKQFRLRRVSAKDHLVPGDT 149

Query: 181 ICLPVTVQEFP-SEKQDCPCNEDEIKYIRALK 89
           + LPV +QE P +EK     N +EI ++R+L+
Sbjct: 150 LFLPVNIQESPVAEKARKFDNRNEIDFLRSLE 181



 Score = 58.2 bits (139), Expect(2) = 1e-31
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPGMPVQGG+GI  S+D
Sbjct: 180 LEIYKDKAIIVVNKPPGMPVQGGVGIKNSID 210


>gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilops tauschii]
          Length = 468

 Score =  102 bits (255), Expect(2) = 8e-31
 Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
 Frame = -3

Query: 547 QFATTAICSKEERENKPEKGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMK 368
           Q A  A   +  R +K  K +W+ LP F P V AA+ A+ + R +  +     + ST   
Sbjct: 33  QDALDATGEESGRPDKGNKNRWMELPPFAP-VDAAAAARAIFRGQGGDEIEGNSNST--- 88

Query: 367 ALKWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVG 188
           A++WV  CCP LP SLVQKLFRLR+V++ +  +  +S     +++ RLRRVSAKD +  G
Sbjct: 89  AIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTAETSST-DASAEQFRLRRVSAKDHLVPG 147

Query: 187 DIICLPVTVQEFP-SEKQDCPCNEDEIKYIRALK 89
           D + LPV +QE P +EK     N +EI ++R+L+
Sbjct: 148 DTLFLPVNIQESPVAEKARKFDNRNEIDFLRSLE 181



 Score = 58.2 bits (139), Expect(2) = 8e-31
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPGMPVQGG+GI  S+D
Sbjct: 180 LEIYKDKAIIVVNKPPGMPVQGGVGIKNSID 210


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  108 bits (269), Expect(2) = 2e-30
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
 Frame = -3

Query: 523 SKEERENKPEKG--KWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALKWVL 350
           S+   + K EKG  +W TLP +T TV+ + +   +            T + T  ALKWV+
Sbjct: 45  SEPVSQQKNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAIT--ALKWVI 102

Query: 349 HCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDIICLP 170
            CCP LPRSLVQKLFRLR+V R+        N G  +  H+L+RV+AKD +NVGD I LP
Sbjct: 103 RCCPELPRSLVQKLFRLRKVPRQ-------LNVGCGNSHHQLKRVAAKDILNVGDQIFLP 155

Query: 169 VTVQEFPSEKQDCPCNEDEIKYIRAL 92
           ++VQ F +EK    CN++E  ++ +L
Sbjct: 156 MSVQVFSTEKTRDYCNKEEETFMHSL 181



 Score = 51.6 bits (122), Expect(2) = 2e-30
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           L ++KD AI+V+NKPPG+PVQGGIG+ +SLD
Sbjct: 181 LVLHKDPAILVINKPPGLPVQGGIGVKRSLD 211


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  106 bits (264), Expect(2) = 7e-30
 Identities = 62/146 (42%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
 Frame = -3

Query: 523 SKEERENKPEKG--KWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALKWVL 350
           S+   + K EKG  +W TLP +T TV+ + +   +            T + T  ALKWV+
Sbjct: 45  SEPVSQQKNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAIT--ALKWVI 102

Query: 349 HCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDIICLP 170
            CCP LPRSLVQKLFRLR+VRR S +    S + +++++ +L+RV+AKD +NVGD I LP
Sbjct: 103 RCCPELPRSLVQKLFRLRKVRRGS-SMIENSEYNLEARD-QLKRVAAKDILNVGDQIFLP 160

Query: 169 VTVQEFPSEKQDCPCNEDEIKYIRAL 92
           ++VQ F +EK    CN++E  ++ +L
Sbjct: 161 MSVQVFSTEKTRDYCNKEEETFMHSL 186



 Score = 51.6 bits (122), Expect(2) = 7e-30
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           L ++KD AI+V+NKPPG+PVQGGIG+ +SLD
Sbjct: 186 LVLHKDPAILVINKPPGLPVQGGIGVKRSLD 216


>dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 472

 Score = 99.0 bits (245), Expect(2) = 1e-29
 Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
 Frame = -3

Query: 532 AICSKEERENKPEKG---KWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKAL 362
           A+ +  E   +P+KG   +W+ LP F P V AA+ A+ + R +  +     + ST   A+
Sbjct: 39  ALDATREESGQPDKGNKNRWMELPPFAP-VDAAAAARAIFRGQGGDEIEGSSNST---AI 94

Query: 361 KWVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDI 182
           +WV  CCP LP SLVQKLFRLR+V++ +  +  +S     +++ RLRRVSAKD +  GD 
Sbjct: 95  RWVRRCCPDLPASLVQKLFRLRKVKKNAVTAETSSTHA-SAEQFRLRRVSAKDHLLPGDT 153

Query: 181 ICLPVTVQEFP-SEKQDCPCNEDEIKYIRALK 89
           + LPV +QE   +EK     N +EI ++R+L+
Sbjct: 154 LFLPVNIQESSVAEKARKFDNRNEIDFLRSLE 185



 Score = 58.2 bits (139), Expect(2) = 1e-29
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPGMPVQGG+GI  S+D
Sbjct: 184 LEIYKDKAIIVVNKPPGMPVQGGVGIKNSID 214


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
           gi|482566291|gb|EOA30480.1| hypothetical protein
           CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  113 bits (282), Expect(2) = 1e-29
 Identities = 64/138 (46%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
 Frame = -3

Query: 493 KGKWLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALKWVLHCCPRLPRSLVQ 314
           +GKWLTLP F+PTV   +V KEL+     ++    T S+T  AL+W+L C P LPR+LVQ
Sbjct: 52  RGKWLTLPPFSPTVDGTAVGKELASEG--DSITGSTDSSTTTALRWILRCRPDLPRTLVQ 109

Query: 313 KLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDIICLPVTVQEF----PS 146
           KLFRLRQVRRE       S  G + Q  +L+RV+AK+ +NVGD I LP++V       P+
Sbjct: 110 KLFRLRQVRRE----MSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPA 165

Query: 145 EKQDCPCNEDEIKYIRAL 92
           +K+   C+E+E K++ +L
Sbjct: 166 KKESFRCSEEERKFVCSL 183



 Score = 43.5 bits (101), Expect(2) = 1e-29
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           L +YKD +IIV+NKP GM VQGG GI  S+D
Sbjct: 183 LVLYKDPSIIVLNKPHGMAVQGGTGIKTSID 213


>gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
          Length = 465

 Score = 98.6 bits (244), Expect(2) = 1e-29
 Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
 Frame = -3

Query: 532 AICSKEERENKPEKGK--WLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALK 359
           A+ S ++     E+GK  WL LP F P + AA+ A+ +SR    E  + E  +T   A+K
Sbjct: 34  ALVSGDDGGETGERGKSPWLQLPPFAP-LDAAAAARAISRGG-GEGGDGEQGAT---AIK 88

Query: 358 WVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDII 179
           WV  CCP LP SLVQKLFRLR+V++    + + S+    +++HRLRRVSAKD +  GDI+
Sbjct: 89  WVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEI-SSADASAEQHRLRRVSAKDQLMPGDIL 147

Query: 178 CLPVTVQEFP-SEKQDCPCNEDEIKYIRALK 89
            LPV ++E   +EK     N +EI ++R L+
Sbjct: 148 FLPVNLKESSVAEKTKKFDNRNEINFLRGLE 178



 Score = 58.2 bits (139), Expect(2) = 1e-29
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPGMPVQGG+GI  S+D
Sbjct: 177 LEIYKDEAIIVVNKPPGMPVQGGVGIKNSID 207


>ref|NP_001062556.1| Os09g0103500 [Oryza sativa Japonica Group]
           gi|75117672|sp|Q69K07.1|PUS4_ORYSJ RecName: Full=RNA
           pseudouridine synthase 4, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 4; AltName:
           Full=RNA-uridine isomerase 4; Flags: Precursor
           gi|50725212|dbj|BAD34146.1| ribosomal large subunit
           pseudouridine synthase C-like [Oryza sativa Japonica
           Group] gi|51091882|dbj|BAD36694.1| ribosomal large
           subunit pseudouridine synthase C-like [Oryza sativa
           Japonica Group] gi|113630789|dbj|BAF24470.1|
           Os09g0103500 [Oryza sativa Japonica Group]
          Length = 448

 Score = 98.6 bits (244), Expect(2) = 1e-29
 Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
 Frame = -3

Query: 532 AICSKEERENKPEKGK--WLTLPAFTPTVHAASVAKELSRSRLVENRNDETTSTTMKALK 359
           A+ S ++     E+GK  WL LP F P + AA+ A+ +SR    E  + E  +T   A+K
Sbjct: 34  ALVSGDDGGETGERGKSPWLQLPPFAP-LDAAAAARAISRGG-GEGGDGEQGAT---AIK 88

Query: 358 WVLHCCPRLPRSLVQKLFRLRQVRRESFNSTVASNFGIKSQEHRLRRVSAKDGMNVGDII 179
           WV  CCP LP SLVQKLFRLR+V++    + + S+    +++HRLRRVSAKD +  GDI+
Sbjct: 89  WVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEI-SSADASAEQHRLRRVSAKDQLMPGDIL 147

Query: 178 CLPVTVQEFP-SEKQDCPCNEDEIKYIRALK 89
            LPV ++E   +EK     N +EI ++R L+
Sbjct: 148 FLPVNLKESSVAEKTKKFDNRNEINFLRGLE 178



 Score = 58.2 bits (139), Expect(2) = 1e-29
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = -2

Query: 95  LEVYKDSAIIVVNKPPGMPVQGGIGINKSLD 3
           LE+YKD AIIVVNKPPGMPVQGG+GI  S+D
Sbjct: 177 LEIYKDEAIIVVNKPPGMPVQGGVGIKNSID 207