BLASTX nr result
ID: Sinomenium22_contig00040412
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00040412
(980 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 175 6e-63
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 162 8e-60
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 162 1e-59
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 160 2e-59
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 154 2e-58
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 163 7e-58
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 159 2e-57
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 159 3e-57
gb|ABG22123.1| polyprotein [Prunus avium] 140 6e-57
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 157 8e-57
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 157 1e-56
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 155 1e-56
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 152 4e-56
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 158 5e-56
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group] 144 7e-56
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 149 8e-56
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g... 142 3e-55
gb|ABG22121.1| polyprotein [Solanum melongena] 138 4e-55
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 152 5e-55
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 140 5e-54
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 175 bits (443), Expect(2) = 6e-63
Identities = 80/151 (52%), Positives = 111/151 (73%)
Frame = -3
Query: 678 GYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEAMKEALW 499
GY DS++ GDLD+QRST+GY+FTL G +SWR +LQ+TIAL T EAE +A TEA+KEA+W
Sbjct: 145 GYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIW 204
Query: 498 XXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEGEIFLQK 319
E+I V CD+ S I LAKNQ +H++TKHI++++H+ ++IE G++ L+K
Sbjct: 205 LKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKK 264
Query: 318 ISTHDNPADMLTKTILAIKLKHCLNLINILQ 226
I T DNP+DMLTK + +K +HCL LI IL+
Sbjct: 265 IDTKDNPSDMLTKVVSEVKFQHCLKLIQILR 295
Score = 94.0 bits (232), Expect(2) = 6e-63
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = -1
Query: 926 PSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWLVR 747
P + EER+YM+ + YAS VGSL+Y MVCTRPDIS A S+ SR M +P K W AVKW++R
Sbjct: 64 PRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKWILR 123
Query: 746 YL*GTMDVRLVFNRTVVQ 693
YL GT+DV L+F + Q
Sbjct: 124 YLYGTVDVGLLFKKNCGQ 141
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 162 bits (411), Expect(2) = 8e-60
Identities = 78/157 (49%), Positives = 106/157 (67%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
TD + GYVDS+Y DLDR+RS TGY+FT+ +SWR LQ+ +AL T EAE MA+ EA
Sbjct: 1177 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1236
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE +W I +HCDS S I+L K+Q+ H +TKHI+I++HF DVIEEG
Sbjct: 1237 CKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEG 1296
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQ 226
++ + KISTHDNPADM+TK I K + C +L+ +++
Sbjct: 1297 KLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLIE 1333
Score = 95.9 bits (237), Expect(2) = 8e-60
Identities = 47/79 (59%), Positives = 58/79 (73%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A PSTD E EYMS + Y+SAVGSLMY MVC+RPD+S+A SL SR M++P K+HW+ V+
Sbjct: 1099 AAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQ 1158
Query: 758 WLVRYL*GTMDVRLVFNRT 702
W+ RYL GT L F RT
Sbjct: 1159 WIFRYLRGTTYSCLKFGRT 1177
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 162 bits (411), Expect(2) = 1e-59
Identities = 78/157 (49%), Positives = 106/157 (67%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
TD + GYVDS+Y DLDR+RS TGY+FT+ +SWR LQ+ +AL T EAE MA+ EA
Sbjct: 1177 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1236
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE +W I +HCDS S I+L K+Q+ H +TKHI+I++HF DVIEEG
Sbjct: 1237 CKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEG 1296
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQ 226
++ + KISTHDNPADM+TK I K + C +L+ +++
Sbjct: 1297 KLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLIE 1333
Score = 95.1 bits (235), Expect(2) = 1e-59
Identities = 47/79 (59%), Positives = 58/79 (73%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A PS D E EYMS + Y+SAVGSLMY MVC+RPD+S+A SL SR M++P K+HW+AV+
Sbjct: 1099 AAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQ 1158
Query: 758 WLVRYL*GTMDVRLVFNRT 702
W+ RYL GT L F RT
Sbjct: 1159 WIFRYLRGTTYSCLKFGRT 1177
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 160 bits (406), Expect(2) = 2e-59
Identities = 77/157 (49%), Positives = 105/157 (66%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
TD + GYVDS+Y DLDR+RS TGY+FT+ +SWR LQ+ +AL T EAE MA+ EA
Sbjct: 1179 TDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEA 1238
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE +W I +HCDS S I+L K+Q+ H +TKHI+I++HF DVIEEG
Sbjct: 1239 CKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEG 1298
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQ 226
++ + KI THDNPADM+TK I K + C +L+ +++
Sbjct: 1299 KLKVCKICTHDNPADMMTKPIPVAKFELCSSLVGLIE 1335
Score = 96.3 bits (238), Expect(2) = 2e-59
Identities = 47/79 (59%), Positives = 59/79 (74%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A PSTD E EYMS + Y+SAVGSLMY MVC+RPD+S+A SL SR M++P K+HW+A++
Sbjct: 1101 AAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQ 1160
Query: 758 WLVRYL*GTMDVRLVFNRT 702
W+ RYL GT L F RT
Sbjct: 1161 WIFRYLRGTTYSCLKFGRT 1179
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 154 bits (388), Expect(2) = 2e-58
Identities = 76/155 (49%), Positives = 101/155 (65%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
T LV+GY DS+Y GD+D +RS TGY+FTL +SW+ LQ T+ L T EAE MA+TEA
Sbjct: 1153 TQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEA 1212
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE +W + V+CDS S I LAK+QVHH +TKHI++R+HF + E
Sbjct: 1213 AKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHF---LRSEK 1269
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINI 232
I ++K+ T DNPADM TK + K +HCL+L+NI
Sbjct: 1270 RIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNI 1304
Score = 100 bits (248), Expect(2) = 2e-58
Identities = 46/76 (60%), Positives = 59/76 (77%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A +P ++EE+EYMS + YASAVGSLMY MVCTRPD++HA S+ SR M P ++HWQAVK
Sbjct: 1074 AMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVK 1133
Query: 758 WLVRYL*GTMDVRLVF 711
+ RYL GT DV L++
Sbjct: 1134 RIFRYLRGTSDVGLIY 1149
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 163 bits (413), Expect(2) = 7e-58
Identities = 76/158 (48%), Positives = 109/158 (68%)
Frame = -3
Query: 705 DSGTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAV 526
+S ++ + G+VD++Y G++D ++S TGY+FT G +SW+ LQ+ +AL T EAE MA+
Sbjct: 1048 NSQLETQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYMAM 1107
Query: 525 TEAMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVI 346
TEA+KEA+W +VV+CD+ S IHLAKNQ H ++KHI++R HF D+I
Sbjct: 1108 TEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDII 1167
Query: 345 EEGEIFLQKISTHDNPADMLTKTILAIKLKHCLNLINI 232
GEI + K+ T DNP+DMLTK++ K KHCLNLIN+
Sbjct: 1168 AAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLINM 1205
Score = 88.6 bits (218), Expect(2) = 7e-58
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = -1
Query: 929 SPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWLV 750
+P T EE+ +M I YAS VGS+MY MVC+RPD+++A S+ SR M+ P K HWQAVKWL
Sbjct: 973 APETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLF 1032
Query: 749 RYL*GTMDVRLVF 711
+YL GT + LV+
Sbjct: 1033 QYLAGTRSLGLVY 1045
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 159 bits (403), Expect(2) = 2e-57
Identities = 76/159 (47%), Positives = 107/159 (67%)
Frame = -3
Query: 699 GTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTE 520
G++ V GYVDS++ GD D+++STTGY+FTLA G +SW LQT +AL T EAE MA T+
Sbjct: 1147 GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 519 AMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEE 340
A KEA+W E I V+CDS S +H+A+N HS+TKHI +++HF +V+EE
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 339 GEIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQS 223
G + +QKI T+DN AD +TK+I K C +L +L++
Sbjct: 1267 GSVDMQKIHTNDNLADAMTKSINTDKFIWCRSLYGLLET 1305
Score = 90.9 bits (224), Expect(2) = 2e-57
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
MSPS + ER MS + YASAVGSLMY M+CTRPDI+ A + SR MADP K+HW AVK +
Sbjct: 1072 MSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRI 1131
Query: 752 VRYL*GTMDVRLVF 711
+RY+ GT V + F
Sbjct: 1132 MRYIKGTSGVAVCF 1145
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 159 bits (402), Expect(2) = 3e-57
Identities = 76/159 (47%), Positives = 107/159 (67%)
Frame = -3
Query: 699 GTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTE 520
G++ V GYVDS++ GD D+++STTGY+FTLA G +SW LQT +AL T EAE MA T+
Sbjct: 1147 GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 519 AMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEE 340
A KEA+W E I V+CDS S +H+A+N HS+TKHI +++HF +V+EE
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 339 GEIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQS 223
G + +QKI T+DN AD++TK I A K C + +L++
Sbjct: 1267 GSVDMQKIHTNDNLADVMTKPINADKFVWCRSSYGLLET 1305
Score = 90.9 bits (224), Expect(2) = 3e-57
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
MSPS + ER MS + YASAVGSLMY M+CTRPDI+ A + SR MADP K+HW AVK +
Sbjct: 1072 MSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRI 1131
Query: 752 VRYL*GTMDVRLVF 711
+RY+ GT V + F
Sbjct: 1132 MRYIKGTSGVAVCF 1145
>gb|ABG22123.1| polyprotein [Prunus avium]
Length = 276
Score = 140 bits (354), Expect(2) = 6e-57
Identities = 66/115 (57%), Positives = 87/115 (75%)
Frame = -3
Query: 714 FQQDSGTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAEC 535
FQQD + V GYVDS+Y GDLD++RSTTG++FT+A GP+SWR +LQ+T+AL T EAE
Sbjct: 162 FQQDKVSGQCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEY 221
Query: 534 MAVTEAMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIR 370
MAVTEA+KEA+W + + V+CDS S I+LAKNQVHH++TKHI++R
Sbjct: 222 MAVTEAIKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYLAKNQVHHARTKHIDVR 276
Score = 108 bits (269), Expect(2) = 6e-57
Identities = 53/81 (65%), Positives = 63/81 (77%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A MSP+TDEE YM+ I YASAVGSLMY MVCTRPDIS A S+ SR M +P K HWQAVK
Sbjct: 87 ASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVK 146
Query: 758 WLVRYL*GTMDVRLVFNRTVV 696
W++RY+ GT+DV L+F + V
Sbjct: 147 WILRYILGTVDVGLLFQQDKV 167
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 157 bits (398), Expect(2) = 8e-57
Identities = 75/159 (47%), Positives = 106/159 (66%)
Frame = -3
Query: 699 GTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTE 520
G++ V GYVDS++ GD D+++STTGY+FTL G +SW LQT +AL T EAE MA T+
Sbjct: 1147 GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 519 AMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEE 340
A KEA+W E I V+CDS S +H+A+N HS+TKHI +++HF +V+EE
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 339 GEIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQS 223
G + +QKI T+DN AD++TK I A K C + +L++
Sbjct: 1267 GSVDMQKIHTNDNLADVMTKPINADKFVWCRSSYGLLET 1305
Score = 90.9 bits (224), Expect(2) = 8e-57
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
MSPS + ER MS + YASAVGSLMY M+CTRPDI+ A + SR MADP K+HW AVK +
Sbjct: 1072 MSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRI 1131
Query: 752 VRYL*GTMDVRLVF 711
+RY+ GT V + F
Sbjct: 1132 MRYIKGTSGVAVCF 1145
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 157 bits (396), Expect(2) = 1e-56
Identities = 75/159 (47%), Positives = 106/159 (66%)
Frame = -3
Query: 699 GTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTE 520
G++ V GYVDS++ GD D+++STTGY+FTLA G +SW LQT +AL T EAE MA T+
Sbjct: 1147 GSELTVWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 519 AMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEE 340
A KEA+W E I V+CDS S +H+A+N HS+TKHI +++HF +V+EE
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 339 GEIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQS 223
G + +QKI T+DN AD++TK I K C + +L++
Sbjct: 1267 GSVDMQKIHTNDNLADVMTKPINTDKFVWCRSSYGLLET 1305
Score = 90.9 bits (224), Expect(2) = 1e-56
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
MSPS + ER MS + YASAVGSLMY M+CTRPDI+ A + SR MADP K+HW AVK +
Sbjct: 1072 MSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRI 1131
Query: 752 VRYL*GTMDVRLVF 711
+RY+ GT V + F
Sbjct: 1132 MRYIKGTSGVAVCF 1145
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 155 bits (393), Expect(2) = 1e-56
Identities = 77/154 (50%), Positives = 104/154 (67%)
Frame = -3
Query: 693 DSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEAM 514
D LV GYVDS++ GDLDR+RS TGY+FT+ +SW+ LQ T+AL T EAE MA++EA
Sbjct: 1027 DGLV-GYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEAC 1085
Query: 513 KEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEGE 334
KEA+W I + CDS S I L K+Q+ H +TKHI++R+HF VI EG+
Sbjct: 1086 KEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGVIAEGD 1145
Query: 333 IFLQKISTHDNPADMLTKTILAIKLKHCLNLINI 232
+ + KISTHDNPADM+TK + A K + C +L+ +
Sbjct: 1146 VKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1179
Score = 92.0 bits (227), Expect(2) = 1e-56
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
+ P +D EYMS + Y+SAVGSLMY M+C+RPD+SHA S+ SR MA+P K+HW+ V+W+
Sbjct: 949 LCPQSDYNIEYMSRVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMANPGKEHWKDVQWI 1008
Query: 752 VRYL*GTMDVRLVFNRT 702
RYL GT L F R+
Sbjct: 1009 FRYLHGTSSACLQFGRS 1025
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 152 bits (384), Expect(2) = 4e-56
Identities = 75/154 (48%), Positives = 102/154 (66%)
Frame = -3
Query: 693 DSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEAM 514
D LV GYVDS++ GDLDR+RS GY+FT+ +SW+ LQ T+AL T EAE MA++EA
Sbjct: 984 DGLV-GYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISEAC 1042
Query: 513 KEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEGE 334
KE +W I + CDS S I L K+Q+ H +TKHI++R+HF VI EG+
Sbjct: 1043 KETIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRSVITEGD 1102
Query: 333 IFLQKISTHDNPADMLTKTILAIKLKHCLNLINI 232
+ + KISTHDNPADM+TK + A K + C +L+ +
Sbjct: 1103 VKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1136
Score = 94.0 bits (232), Expect(2) = 4e-56
Identities = 43/77 (55%), Positives = 57/77 (74%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
+ P +D + EYMS + Y+S VGSLMY MVC+RPD+SHA S+ SR MA+P K+HW+AV+W+
Sbjct: 906 LCPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWI 965
Query: 752 VRYL*GTMDVRLVFNRT 702
RYL GT L F R+
Sbjct: 966 FRYLCGTSSACLQFGRS 982
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 158 bits (399), Expect(2) = 5e-56
Identities = 74/159 (46%), Positives = 107/159 (67%)
Frame = -3
Query: 699 GTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTE 520
G++ + GYVDS++ GDLD+++STTGY+FTLA G +SW LQT +AL T EAE MA T+
Sbjct: 1147 GSEFTIRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 519 AMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEE 340
A KEA+W + I V+CDS S +H+A+N HS+TKHI +++HF +V+EE
Sbjct: 1207 ACKEAIWTQRLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 339 GEIFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQS 223
G + +QKI T DN AD++TK I + K C + +L++
Sbjct: 1267 GSVNMQKIHTKDNLADVMTKPINSDKFIWCRSSYGLLET 1305
Score = 87.8 bits (216), Expect(2) = 5e-56
Identities = 43/74 (58%), Positives = 52/74 (70%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
M PS++ ER MS + YASAVGSLMY M+CTRPDI+ A SR MADP K+HW AVK +
Sbjct: 1072 MIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRI 1131
Query: 752 VRYL*GTMDVRLVF 711
+RY+ GT L F
Sbjct: 1132 LRYIRGTSGAALCF 1145
>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
Length = 293
Score = 144 bits (364), Expect(2) = 7e-56
Identities = 69/156 (44%), Positives = 101/156 (64%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
TD + GYVDS++ DLD++RS TGY+FT+ +SW+ LQ +A T EAE MA+ EA
Sbjct: 137 TDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPIVAQSTTEAEYMAIAEA 196
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE++W I + CDS S I L K+Q+ H +TKHI+I++H+ DV+ +G
Sbjct: 197 CKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDVVAQG 256
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINIL 229
++ + KISTHDNPADM+TK + K + C +L+ I+
Sbjct: 257 KLKVCKISTHDNPADMMTKPVPVAKFELCSSLVGIV 292
Score = 100 bits (250), Expect(2) = 7e-56
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A STDE+ EYMS + Y+SAVGSLMY MVC+RPD+SHA SL SR M +P K+HW+A+
Sbjct: 59 ALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAIH 118
Query: 758 WLVRYL*GTMDVRLVFNRT 702
W+ RYL GT D L F RT
Sbjct: 119 WIFRYLRGTTDACLKFGRT 137
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 149 bits (377), Expect(2) = 8e-56
Identities = 76/162 (46%), Positives = 104/162 (64%)
Frame = -3
Query: 693 DSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEAM 514
D LV GYVDS++ GDLDR RS GY+FT+ +SW+ LQ T+AL T EAE MA++EA
Sbjct: 1385 DGLV-GYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEAC 1443
Query: 513 KEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEGE 334
KEA+W I + CDS S I L K+Q+ H +TKHI++R+HF +I EG+
Sbjct: 1444 KEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGD 1503
Query: 333 IFLQKISTHDNPADMLTKTILAIKLKHCLNLINILQS*APCE 208
+ + KIS HDNPADM+TK + A K + C +L+ + + P E
Sbjct: 1504 VKICKISIHDNPADMMTKPVPATKFELCSSLVILSDANVPGE 1545
Score = 95.5 bits (236), Expect(2) = 8e-56
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
+ P +D + EYMS + Y+SAVGSLMY MVC+RPD+SHA S+ SR MA+P K+HW+AV+W+
Sbjct: 1307 LCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWI 1366
Query: 752 VRYL*GTMDVRLVFNRT 702
RYL GT L F R+
Sbjct: 1367 FRYLRGTSSACLQFGRS 1383
>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
Japonica Group]
Length = 759
Score = 142 bits (358), Expect(2) = 3e-55
Identities = 68/156 (43%), Positives = 101/156 (64%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
TD + GYVDS++ DLD++RS TGY+FT+ +SW+ LQ +A T EAE MA+ EA
Sbjct: 603 TDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPIVAQSTTEAEYMAIAEA 662
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE++W I + CDS S I L K+Q+ H +TK+I+I++H+ DV+ +G
Sbjct: 663 CKESVWLKGLFAKLCGVDSCINLFCDSQSAICLTKDQMFHERTKYIDIKYHYVRDVVAQG 722
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINIL 229
++ + KISTHDNPADM+TK + K + C +L+ I+
Sbjct: 723 KLKVCKISTHDNPADMMTKPVPVAKFELCSSLVGIV 758
Score = 100 bits (250), Expect(2) = 3e-55
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A STDE+ EYMS +LY+SA+ LMY MVC+RPD+SHA SL SR MA+P K+HW+AV+
Sbjct: 525 ALQCASTDEDVEYMSRVLYSSAIDFLMYAMVCSRPDLSHAMSLVSRYMANPGKEHWKAVQ 584
Query: 758 WLVRYL*GTMDVRLVFNRT 702
W+ RYL GT D L F RT
Sbjct: 585 WIFRYLRGTADACLKFGRT 603
>gb|ABG22121.1| polyprotein [Solanum melongena]
Length = 361
Score = 138 bits (347), Expect(2) = 4e-55
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = -3
Query: 714 FQQDSGTDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAEC 535
F+QD S V GY DS+Y GDLD++RSTTGY+FTLA GP+SW+ LQ T+AL T EAE
Sbjct: 247 FEQDKSLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEY 306
Query: 534 MAVTEAMKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIR 370
MA+TEA+KEA+W + ++VH DS S IHLAKNQV H++TKHI++R
Sbjct: 307 MAITEAVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAKNQVFHARTKHIDVR 361
Score = 104 bits (260), Expect(2) = 4e-55
Identities = 49/76 (64%), Positives = 60/76 (78%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
+SP TDEEREYM+ + YA+AVGSLMY MVCTR DIS A S+ SR M DP K HWQAVKW+
Sbjct: 174 LSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWI 233
Query: 752 VRYL*GTMDVRLVFNR 705
+RY+ T+D+ LVF +
Sbjct: 234 LRYIKNTVDIGLVFEQ 249
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 152 bits (384), Expect(2) = 5e-55
Identities = 75/155 (48%), Positives = 103/155 (66%)
Frame = -3
Query: 696 TDSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEA 517
+D LV GYVDS++ GDLDR+RS TGY+FT+ +SW+ LQ T+AL T EAE MA++EA
Sbjct: 1086 SDGLV-GYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEA 1144
Query: 516 MKEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEG 337
KE +W I + CDS S I L K+Q+ H +TKHI++R+HF VI EG
Sbjct: 1145 CKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEG 1204
Query: 336 EIFLQKISTHDNPADMLTKTILAIKLKHCLNLINI 232
++ + KISTHDNP DM+TK + A K + C +L+ +
Sbjct: 1205 DVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGV 1239
Score = 90.1 bits (222), Expect(2) = 5e-55
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = -1
Query: 932 MSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVKWL 753
+ P + + EYMS + Y+SAV SLMY MVC+RPD+SHA S+ SR MA+P K+HW+AV+W+
Sbjct: 1009 LCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWI 1068
Query: 752 VRYL*GTMDVRLVFNRT 702
RYL GT L F R+
Sbjct: 1069 FRYLRGTSSACLQFGRS 1085
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 140 bits (354), Expect(2) = 5e-54
Identities = 67/155 (43%), Positives = 99/155 (63%)
Frame = -3
Query: 693 DSLVSGYVDSNYVGDLDRQRSTTGYMFTLAHGPISWRCMLQTTIALPTIEAECMAVTEAM 514
D + GYVDS++ DLD++RS TGY+FT+ +SW+ LQ +A T EAE MA+ EA
Sbjct: 1167 DKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEAC 1226
Query: 513 KEALWXXXXXXXXXXX*ESIVVHCDS*SVIHLAKNQVHHSKTKHINIRFHFGHDVIEEGE 334
KE++W I + CDS S I L K+Q+ H +TKHI+I++H+ D++ +G+
Sbjct: 1227 KESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGK 1286
Query: 333 IFLQKISTHDNPADMLTKTILAIKLKHCLNLINIL 229
+ + KIS HDNPADM+TK I K + C +L+ I+
Sbjct: 1287 LKVCKISIHDNPADMMTKPIPVAKFELCSSLVGIV 1321
Score = 98.6 bits (244), Expect(2) = 5e-54
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -1
Query: 938 AYMSPSTDEEREYMSHILYASAVGSLMYVMVCTRPDISHAASLGSR*MADPRKQHWQAVK 759
A STDE+ EYMS + Y+SAVGSLMY MVC+ PD+SHA SL SR MA+P K+HW+AV+
Sbjct: 1088 ALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQ 1147
Query: 758 WLVRYL*GTMDVRLVFNR 705
W+ RYL GT D L F R
Sbjct: 1148 WIFRYLRGTADACLKFGR 1165