BLASTX nr result
ID: Sinomenium22_contig00038065
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00038065
(319 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana] 62 1e-07
gb|AFU25705.1| gag-pol precursor [Castanea mollissima] 44 2e-07
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu] 45 3e-07
gb|ABA93980.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 5e-07
emb|CAH66330.1| H0813E03.7 [Oryza sativa Indica Group] 59 7e-07
gb|AAV32231.1| putative polyprotein [Oryza sativa Japonica Group] 59 7e-07
emb|CAD40484.2| OSJNBa0067G20.2 [Oryza sativa Japonica Group] gi... 59 7e-07
gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japo... 59 7e-07
emb|CAE02993.2| OSJNBa0043L09.12 [Oryza sativa Japonica Group] 59 7e-07
emb|CAD39396.2| OSJNBb0089K24.6 [Oryza sativa Japonica Group] 59 7e-07
gb|AAL91598.1|AC099400_4 Putative gag-pol precursor [Oryza sativ... 59 9e-07
emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group] 59 9e-07
emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group] 59 9e-07
gb|AAP51762.2| retrotransposon protein, putative, Ty3-gypsy subc... 59 9e-07
gb|ABA97326.2| transposon protein, putative, unclassified [Oryza... 59 9e-07
gb|AAP20843.1| retrotransposon protein, putative, Ty3-gypsy sub-... 59 9e-07
gb|ABA98352.1| transposon protein, putative, unclassified [Oryza... 58 1e-06
gb|AAX95959.1| retrotransposon protein, putative, Ty3-gypsy sub-... 58 1e-06
gb|AAM93706.1| putative gag-pol precursor [Oryza sativa Japonica... 58 1e-06
gb|ABF97286.1| transposon protein, putative, unclassified [Oryza... 58 1e-06
>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
Length = 1838
Score = 61.6 bits (148), Expect = 1e-07
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF+ LK+YL + P+L KP E L+LYI G Q+PI+YTSKS+++
Sbjct: 1097 EAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVE 1156
Query: 138 A*SRYPKNGKVGSSIDNSCKKVK 70
A +RYP K ++ S +K++
Sbjct: 1157 AETRYPVIEKAALAVVTSARKLR 1179
>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
Length = 1106
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -2
Query: 315 AFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILDA 136
AF+ L+ YL + +L++P E L+ Y+ G+Q+PIYY SKS+ +A
Sbjct: 367 AFEDLRQYLANPLILSRPEKKEVLYAYLAVMNYAVSLVLIRNDDGVQKPIYYISKSLQEA 426
Query: 135 *SRY 124
RY
Sbjct: 427 ERRY 430
Score = 37.0 bits (84), Expect(2) = 2e-07
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3
Query: 116 MEKLVLALITAARKLKLYCQTHTIIVITKYP 24
+EK +LA++ A RKL Y Q HTI+V+T+ P
Sbjct: 433 LEKALLAVVHATRKLPHYFQAHTIVVLTQLP 463
>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
Length = 1542
Score = 44.7 bits (104), Expect(2) = 3e-07
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSI 145
EAF LK YL APLL+ P + L+LY+ G Q P+YYTSK++
Sbjct: 1037 EAFGQLKEYLARAPLLSTPREGDQLYLYLAISKWATSSVLVREYEGKQHPVYYTSKAL 1094
Score = 35.4 bits (80), Expect(2) = 3e-07
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = -3
Query: 107 LVLALITAARKLKLYCQTHTIIVIT 33
L LALITAARKL+ Y Q H I+V+T
Sbjct: 1094 LALALITAARKLRPYFQAHPIVVMT 1118
>gb|ABA93980.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1567
Score = 59.3 bits (142), Expect = 5e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 888 EAFVALKRYLSNPPILVAPQPNEELFLYIAAIPYSVSTVIVVEREKVQRPVYYVSEALHD 947
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 948 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 980
>emb|CAH66330.1| H0813E03.7 [Oryza sativa Indica Group]
Length = 940
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 332 EAFVALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTIIVVEREKVQRPVYYVSEALHD 391
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 392 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 424
>gb|AAV32231.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 3092
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 2475 EAFVALKRYLSNRPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYVSEALHD 2534
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 2535 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 2567
>emb|CAD40484.2| OSJNBa0067G20.2 [Oryza sativa Japonica Group]
gi|38345361|emb|CAE03319.2| OSJNBa0032I19.13 [Oryza
sativa Japonica Group]
Length = 940
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 332 EAFVALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTIIVVEREKVQRPVYYVSEALHD 391
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 392 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 424
>gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1445
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 944 EAFIALKRYLSNPPILVAPQPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYVSEALHD 1003
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 1004 AKTRYPQIQKLLYAVIMTLRKLR------HYFQAHRVTV 1036
>emb|CAE02993.2| OSJNBa0043L09.12 [Oryza sativa Japonica Group]
Length = 1120
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 597 EAFVALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIIVEREKVQRPVYYVSEALHD 656
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 657 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 689
>emb|CAD39396.2| OSJNBb0089K24.6 [Oryza sativa Japonica Group]
Length = 1400
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 1061 EAFVALKRYLSNPPVLVAPKPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYVSEALHD 1120
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 1121 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 1153
>gb|AAL91598.1|AC099400_4 Putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 791
Score = 58.5 bits (140), Expect = 9e-07
Identities = 34/98 (34%), Positives = 53/98 (54%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E L LYI +QQP+YY S+++ D
Sbjct: 255 EAFVALKRYLSNPPILVAPQPNEELLLYIAAMPYSVSTIIVVEREKVQQPVYYVSEALHD 314
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVS 25
A +RYP+ K+ ++ + KK++ H+ H+V+
Sbjct: 315 AKTRYPQIQKLLYAVIMTSKKLR------HYFQAHRVT 346
>emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group]
Length = 523
Score = 58.5 bits (140), Expect = 9e-07
Identities = 34/99 (34%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 223 EAFVALKRYLTNPPVLVAPQPNEELFLYIAATPYSISTVIVVEREKVQRPVYYVSEALHD 282
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V+I
Sbjct: 283 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTI 315
>emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group]
Length = 523
Score = 58.5 bits (140), Expect = 9e-07
Identities = 34/99 (34%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 223 EAFVALKRYLTNPPVLVAPQPNEELFLYIAATPYSISTVIVVEREKVQRPVYYVSEALHD 282
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V+I
Sbjct: 283 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTI 315
>gb|AAP51762.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 911
Score = 58.5 bits (140), Expect = 9e-07
Identities = 34/98 (34%), Positives = 53/98 (54%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E L LYI +QQP+YY S+++ D
Sbjct: 255 EAFVALKRYLSNPPILVAPQPNEELLLYIAAMPYSVSTIIVVEREKVQQPVYYVSEALHD 314
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVS 25
A +RYP+ K+ ++ + KK++ H+ H+V+
Sbjct: 315 AKTRYPQIQKLLYAVIMTSKKLR------HYFQAHRVT 346
>gb|ABA97326.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 916
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 196 EAFIALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYVSEALHD 255
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 256 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 288
>gb|AAP20843.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108708895|gb|ABF96690.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1547
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 973 EAFIALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYVSEALHD 1032
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 1033 AKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 1065
>gb|ABA98352.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 569
Score = 58.2 bits (139), Expect = 1e-06
Identities = 33/99 (33%), Positives = 53/99 (53%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +QQP+YY S ++ D
Sbjct: 98 EAFIALKRYLSNPPILVAPQPNEELFLYIAATPYSVSTVIVVEREKVQQPVYYVSDALHD 157
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
+RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 158 TKTRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 190
>gb|AAX95959.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550305|gb|ABA93102.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1600
Score = 58.2 bits (139), Expect = 1e-06
Identities = 33/99 (33%), Positives = 54/99 (54%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 873 EAFVALKRYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYVSEALHD 932
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A RYP+ K+ ++ + +K++ H+ H+V++
Sbjct: 933 AKRRYPQIQKLLYAVIMTSRKLR------HYFQAHRVTV 965
>gb|AAM93706.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432507|gb|AAP54129.1| transposon protein, putative,
unclassified [Oryza sativa Japonica Group]
Length = 816
Score = 58.2 bits (139), Expect = 1e-06
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI +Q+P+YY S+++ D
Sbjct: 231 EAFVALKRYLSNPPVLVAPQPNEELFLYIAATPYSISTVIVVEREKVQRPVYYVSEALHD 290
Query: 138 A*SRYPKNGKVGSSIDNSCKKVK 70
A +RYP+ K+ ++ + +K++
Sbjct: 291 AKTRYPQIQKLLYAVITTSRKLR 313
>gb|ABF97286.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1515
Score = 58.2 bits (139), Expect = 1e-06
Identities = 34/99 (34%), Positives = 54/99 (54%)
Frame = -2
Query: 318 EAFQALKNYLGSAPLLAKPIPSE*LFLYIXXXXXXXXXXXXXXX*GIQQPIYYTSKSILD 139
EAF ALK YL + P+L P P+E LFLYI IQ+P+YY S+++ D
Sbjct: 769 EAFIALKRYLSNPPVLVAPQPNEELFLYITATPYSVSTVIVVETEKIQRPVYYVSEALHD 828
Query: 138 A*SRYPKNGKVGSSIDNSCKKVKAILPNSHHHCHHQVSI 22
A +RYP K+ ++ + +K++ H+ H+V++
Sbjct: 829 AKTRYPHIQKLLYAVIMTSRKLR------HYFQAHRVTV 861