BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00036376
         (1160 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   338   e-140
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              329   e-137
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   318   e-133
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   320   e-133
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   318   e-133
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   320   e-132
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob...   325   e-132
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   321   e-132
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   315   e-131
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   308   e-130
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   303   e-128
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           305   e-128
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           304   e-128
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   301   e-127
gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus...   307   e-127
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   304   e-125
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   303   e-125
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   296   e-124
ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   283   e-123
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   297   e-123

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  338 bits (867), Expect(2) = e-140
 Identities = 172/244 (70%), Positives = 204/244 (83%), Gaps = 5/244 (2%)
 Frame = +1

Query: 85  MRHFSRTSIP----PAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 252
           +RH+SR + P     A VIRVSNN+A+LGSPKEGPKPRQLLSLPPFPA P P   K+  +
Sbjct: 16  VRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP--GKSLVN 73

Query: 253 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK-RMSPLRKIS 429
           + G P  VTA++W+KYYF +IP SV+Q+HFNKGLV ME S+      EK+ ++ PLRKI 
Sbjct: 74  VSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIK 133

Query: 430 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 609
           PN VMEAG++I+VPVS+AE+RISKRFDTIPSGTL+PNADEIEYLQRLV YKD AILVLNK
Sbjct: 134 PNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNK 193

Query: 610 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 789
           PPK+P+KGNLPVHNSMDALAAAAL++ +E+GPKLVHRLDRESSGL LMGR+KES + L W
Sbjct: 194 PPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHW 253

Query: 790 LFSD 801
           LFSD
Sbjct: 254 LFSD 257



 Score =  188 bits (477), Expect(2) = e-140
 Identities = 87/101 (86%), Positives = 95/101 (94%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT QRYWALVIGSP++K+GVI APLSKVLL+DGKTER+I+A+ SG+EASQEAITEYRVLG
Sbjct: 274  ATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLG 333

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIELCP T RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 334  PMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGW 374


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  329 bits (843), Expect(2) = e-137
 Identities = 169/246 (68%), Positives = 204/246 (82%), Gaps = 7/246 (2%)
 Frame = +1

Query: 85  MRHFSRTSIP----PAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 252
           +RH+SR + P     A VIRVSNN+A+LGSPKEGPKPRQLLSLPPFPA P P   K+  +
Sbjct: 16  VRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP--GKSLVN 73

Query: 253 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK-RMSPLRKIS 429
           + G P  VTA++W+KYYF +IP SV+Q+HFNKGLV ME S+      EK+ ++ PLRKI 
Sbjct: 74  VSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIK 133

Query: 430 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRL--VMYKDSAILVL 603
           PN VMEAG++I+VPVS+AE+RISKRFDTIPSGTL+PNADEIEYLQRL  + ++D AILVL
Sbjct: 134 PNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVL 193

Query: 604 NKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQL 783
           NKPPK+P+KGNLPVHNSMDALAAAAL++ +E+GPKLVHRLDRESSGL LMGR+KES + L
Sbjct: 194 NKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHL 253

Query: 784 QWLFSD 801
            WLFSD
Sbjct: 254 HWLFSD 259



 Score =  188 bits (477), Expect(2) = e-137
 Identities = 87/101 (86%), Positives = 95/101 (94%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT QRYWALVIGSP++K+GVI APLSKVLL+DGKTER+I+A+ SG+EASQEAITEYRVLG
Sbjct: 276  ATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLG 335

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIELCP T RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 336  PMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGW 376


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  318 bits (816), Expect(2) = e-133
 Identities = 164/253 (64%), Positives = 195/253 (77%), Gaps = 4/253 (1%)
 Frame = +1

Query: 55  RSVRLRSVVAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEP 222
           RS+R   ++A R +SR S PP      +IRVSNNIA+LGSPKEGPK RQLLSLPPFP  P
Sbjct: 3   RSMRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYP 62

Query: 223 NPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK 402
            P   KN   + G+   VTA+ W+KYYF +I  S IQ+HF KGLVQ+E      L  EK 
Sbjct: 63  LP--GKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGL-DEKG 119

Query: 403 RMSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYK 582
            + P+RKI    +ME G++IH+PVS+AE ++++RFDTIPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179

Query: 583 DSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRS 762
           DSAI+VLNKPPKLPVKG LPVHNSMDALA AALSY ++DGPKLVHRLDRESSG+ LMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239

Query: 763 KESTSQLQWLFSD 801
           KES   LQWLFS+
Sbjct: 240 KESVDHLQWLFSN 252



 Score =  184 bits (467), Expect(2) = e-133
 Identities = 84/101 (83%), Positives = 94/101 (93%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT Q+YWALVIG PRE++GVI APLSKVLL+DGKTER+I+A+ + +EASQEAITEYRVLG
Sbjct: 269  ATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVILANKASIEASQEAITEYRVLG 328

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            PTINGCSWIELCP T RKHQLR+HCAEALGTPIVGDYKYGW
Sbjct: 329  PTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGW 369


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
           gi|462405724|gb|EMJ11188.1| hypothetical protein
           PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  320 bits (821), Expect(2) = e-133
 Identities = 164/245 (66%), Positives = 194/245 (79%), Gaps = 4/245 (1%)
 Frame = +1

Query: 79  VAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNS 246
           VA R +SR   PPA     +IRVSN++ARLG PKEGPKPRQLLSLPPFP  P P    + 
Sbjct: 13  VARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHE 72

Query: 247 ASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKI 426
               G  +RVTAV+W+KYYF  I  S IQ+HF +GLVQME      ++ ++ +M P+RKI
Sbjct: 73  G---GVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECPG---MIEKEGQMKPMRKI 126

Query: 427 SPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLN 606
            P+ VME G++++VPVS+ ESR+S+RFD IPSGTLYPNADEIEY+QR V YKDSAI+VLN
Sbjct: 127 RPSEVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAIIVLN 186

Query: 607 KPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQ 786
           KPPKLPVKGNLPVHNSMDALAAAALSYG+  GPKLVHRLDRESSGLHLMGR+KES S LQ
Sbjct: 187 KPPKLPVKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLDRESSGLHLMGRTKESVSLLQ 246

Query: 787 WLFSD 801
           WL++D
Sbjct: 247 WLYTD 251



 Score =  182 bits (461), Expect(2) = e-133
 Identities = 85/101 (84%), Positives = 95/101 (94%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  QRYWALVIGSP+EK+G+I APLSKVLL++GKTER+I+AH SG+EASQ+AIT+YRVLG
Sbjct: 268  ARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTERVILAHQSGLEASQKAITQYRVLG 327

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            PTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 328  PTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 368


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  318 bits (816), Expect(2) = e-133
 Identities = 164/253 (64%), Positives = 195/253 (77%), Gaps = 4/253 (1%)
 Frame = +1

Query: 55  RSVRLRSVVAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEP 222
           RS+R   ++A R +SR S PP      +IRVSNNIA+LGSPKEGPK RQLLSLPPFP  P
Sbjct: 3   RSMRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYP 62

Query: 223 NPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK 402
            P   KN   + G+   VTA+ W+KYYF +I  S IQ+HF KGLVQ+E      L  EK 
Sbjct: 63  LP--GKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGL-DEKG 119

Query: 403 RMSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYK 582
            + P+RKI    +ME G++IH+PVS+AE ++++RFDTIPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179

Query: 583 DSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRS 762
           DSAI+VLNKPPKLPVKG LPVHNSMDALA AALSY ++DGPKLVHRLDRESSG+ LMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239

Query: 763 KESTSQLQWLFSD 801
           KES   LQWLFS+
Sbjct: 240 KESVDHLQWLFSN 252



 Score =  184 bits (466), Expect(2) = e-133
 Identities = 83/101 (82%), Positives = 94/101 (93%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT Q+YWALVIG PRE++GVI APLSKVLL+DGKTER+++A+ + +EASQEAITEYRVLG
Sbjct: 269  ATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVVLANKASIEASQEAITEYRVLG 328

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            PTINGCSWIELCP T RKHQLR+HCAEALGTPIVGDYKYGW
Sbjct: 329  PTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGW 369


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  320 bits (819), Expect(2) = e-132
 Identities = 166/244 (68%), Positives = 193/244 (79%), Gaps = 5/244 (2%)
 Frame = +1

Query: 85  MRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 252
           +RH+SR   P  V    VIRVSNNIARL  PKEGPKPRQLLSLPPFP  P P   KNS S
Sbjct: 18  VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLP--GKNSTS 75

Query: 253 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRKIS 429
            PG+   VTAV W+KYYF     SVI++HF +GLVQME         +KK  M P+RKI 
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIR 135

Query: 430 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 609
           PN VM+ G+++HV VS+AE++ISKRFD IPSGTL PNADEI+YLQRLV+YKDSAI++LNK
Sbjct: 136 PNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNK 195

Query: 610 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 789
           PPKLPVKGNLPVHNSMDALAAAALSY ++DGPKLVHRLDRESSG+ L+GR+K+S S LQW
Sbjct: 196 PPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHLQW 255

Query: 790 LFSD 801
           LFS+
Sbjct: 256 LFSN 259



 Score =  181 bits (458), Expect(2) = e-132
 Identities = 82/101 (81%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            +T QRYWALVIG+P+EK+G+I APLSKVLLNDGKTER+I+AH S +E  QEA+TEYRVLG
Sbjct: 276  STYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHESSIEPHQEAVTEYRVLG 335

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 336  PKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGW 376


>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
           gi|508779021|gb|EOY26277.1| Pseudouridine synthase
           family protein [Theobroma cacao]
          Length = 471

 Score =  325 bits (834), Expect(2) = e-132
 Identities = 175/271 (64%), Positives = 205/271 (75%), Gaps = 5/271 (1%)
 Frame = +1

Query: 4   LHKTQVGFHSLSLTHHGRSVRLRSVVAMRHFSRTSIPPAV----VIRVSNNIARLGSPKE 171
           + K+++G+  LSL              +RH+SR + PP      V+RVSN++A LG+PK+
Sbjct: 1   MQKSRLGWQFLSL--------------VRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQ 46

Query: 172 GPKPRQLLSLPPFPAEPNPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKG 351
           GPKPRQLLSLPPFP  P P   KN    PG  ARVTA++WLKYYF +IP S IQ+HFNKG
Sbjct: 47  GPKPRQLLSLPPFPGYPLP--GKN----PGGTARVTAISWLKYYFDEIPDSAIQSHFNKG 100

Query: 352 LVQMEYSDPKYLLSEKKR-MSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGT 528
           LVQME S+      E+   M PLRKI  N VME G+++ VPVSIAE+RISKRFD IPSGT
Sbjct: 101 LVQMESSNAGDTCIERDGLMKPLRKIKHNEVMEVGTRVWVPVSIAETRISKRFDCIPSGT 160

Query: 529 LYPNADEIEYLQRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPK 708
           LYPN DEI+YLQRLV YKD AILVLNKPPKLPVKG+LPVHNSMDALAAAALSY H++GPK
Sbjct: 161 LYPNKDEIDYLQRLVKYKDYAILVLNKPPKLPVKGSLPVHNSMDALAAAALSYDHDEGPK 220

Query: 709 LVHRLDRESSGLHLMGRSKESTSQLQWLFSD 801
           LVHRLDRESSGL LMGR+KES + L WLF+D
Sbjct: 221 LVHRLDRESSGLLLMGRTKESVAHLHWLFND 251



 Score =  175 bits (443), Expect(2) = e-132
 Identities = 81/98 (82%), Positives = 91/98 (92%)
 Frame = +3

Query: 867  QRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLGPTI 1046
            QR+WALVIG+P+EK+G+I APLSK+LL+DGKTER+I+A   G+EASQEAITEYRVLGP I
Sbjct: 271  QRFWALVIGTPKEKEGLICAPLSKILLDDGKTERVILAQNVGLEASQEAITEYRVLGPMI 330

Query: 1047 NGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            NGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 331  NGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 368


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
           gi|561034434|gb|ESW32964.1| hypothetical protein
           PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  321 bits (822), Expect(2) = e-132
 Identities = 164/244 (67%), Positives = 197/244 (80%), Gaps = 5/244 (2%)
 Frame = +1

Query: 85  MRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 252
           +RH+SR   P  V    VIRVSNN+ARL +PKEGPKPRQLLSLPPFP  P P  AK+S S
Sbjct: 19  VRHYSRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLP--AKSSTS 76

Query: 253 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRKIS 429
            PGQ   VTAV W+KYYF     SVI++HF +GLVQME        ++K+  M P+RKI 
Sbjct: 77  DPGQRDYVTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIR 136

Query: 430 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 609
           PN VM+ G+++HVPVSIAE+R+SKR+D IP GTLYPNADEI+YLQRLV+YKDSAI+VLNK
Sbjct: 137 PNEVMKHGARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNK 196

Query: 610 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 789
           PPKLPVKGNLPVHNSMDALAAAALSY +++GPKLVHRLDRE+SG+ L+GR+K+S S LQW
Sbjct: 197 PPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQW 256

Query: 790 LFSD 801
           LF++
Sbjct: 257 LFTN 260



 Score =  178 bits (451), Expect(2) = e-132
 Identities = 83/101 (82%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT QRYWALVIG+P+EK+G+I APLSKVLLNDGKTERII+A+ S VE  QEA+TE+RVLG
Sbjct: 277  ATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILANHSSVEPRQEAVTEFRVLG 336

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 337  PKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGW 377


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  315 bits (807), Expect(2) = e-131
 Identities = 163/242 (67%), Positives = 193/242 (79%), Gaps = 4/242 (1%)
 Frame = +1

Query: 88  RHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASL 255
           RH+SR   P  V    VI VSNNIARL +PKEGPKPRQLLSLPPFP  P P   K+S S 
Sbjct: 19  RHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLP--DKSSISG 76

Query: 256 PGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPN 435
             Q   VTAV W+KYYF     SVI++HF +GLVQME  D      ++++M P+RKI PN
Sbjct: 77  SRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDSS--TQKEEQMKPMRKIRPN 134

Query: 436 VVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPP 615
            VM+ G+++HVPVSI E+RISKR+D IPSGTLYPNADEI+YLQRLV+YKDSAI+VLNKPP
Sbjct: 135 EVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 194

Query: 616 KLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLF 795
           KLPVKG+LPVHNSMDALAAAALSY +++GPKLVHRLDRESSG+ L+GR+K+S S LQWLF
Sbjct: 195 KLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLF 254

Query: 796 SD 801
           S+
Sbjct: 255 SN 256



 Score =  182 bits (462), Expect(2) = e-131
 Identities = 85/101 (84%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT QRYWALVIG+P+EK+G+I APLSKVLLNDGKTERII+AH S VE  QEA+TEYRVLG
Sbjct: 273  ATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLG 332

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 333  PQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGW 373


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  308 bits (789), Expect(2) = e-130
 Identities = 164/254 (64%), Positives = 198/254 (77%), Gaps = 5/254 (1%)
 Frame = +1

Query: 55  RSVRLRSVVAM-RHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAE 219
           +++  R VV+  R +SR + PP      VIRVSNN+A LGSPK+GPKPRQLLSLPPFP  
Sbjct: 3   KNIYCRRVVSQGRSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGL 62

Query: 220 PNPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEK 399
           P P   +NS +     + VTA++W+KYYF +I  S IQ+HFNKGL  +E  +    +   
Sbjct: 63  PLP--GRNSMA-----SHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSGSIEYG 115

Query: 400 KRMSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMY 579
            +MS LRKI  N +MEAG+++HV VS+AE+RISKRFDTIPSGTLYPNADEI+YLQRLV Y
Sbjct: 116 GQMS-LRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVKY 174

Query: 580 KDSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGR 759
           KDSAI+VLNKPP+LPVKGNLP+HNSMDALAAAALSY +++GPKLV RLDRESSGL LMGR
Sbjct: 175 KDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGR 234

Query: 760 SKESTSQLQWLFSD 801
           +KES   LQWLFSD
Sbjct: 235 TKESIDHLQWLFSD 248



 Score =  187 bits (474), Expect(2) = e-130
 Identities = 87/101 (86%), Positives = 95/101 (94%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT QRYWALVIGSP+EK+G+IRAPLSKVLLNDGKTER+++A  SG+EASQEA+TEYRVLG
Sbjct: 265  ATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEASQEALTEYRVLG 324

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 325  PRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 365


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  303 bits (776), Expect(2) = e-128
 Identities = 158/241 (65%), Positives = 186/241 (77%), Gaps = 1/241 (0%)
 Frame = +1

Query: 82  AMRHFSRTSIPPAVVIRVSNN-IARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLP 258
           ++RH+SR S P   VIRVS   +A LG PK GPKPRQLLSLPPFP    P          
Sbjct: 14  SIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLP------GKHW 67

Query: 259 GQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNV 438
           G+   VTAV+W+KYYF ++  SVIQ+HFNKGLVQME ++      E+ +M P+RKI  N 
Sbjct: 68  GRQGHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNE 127

Query: 439 VMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPK 618
           VME G++I +PVS+ E RISKR+DTIPSGTL PNADEI+YL+RLV Y+DSAILVLNKPPK
Sbjct: 128 VMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPK 187

Query: 619 LPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFS 798
           +P+KGNLPVHNSMDALAAAALSY + +GPKLVHRLDRESSGL LMGR+KES S L WLFS
Sbjct: 188 VPLKGNLPVHNSMDALAAAALSYDNNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 247

Query: 799 D 801
           D
Sbjct: 248 D 248



 Score =  185 bits (469), Expect(2) = e-128
 Identities = 89/101 (88%), Positives = 94/101 (93%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  QRYWALVIGSPREKQG+IRAPLSKVLL+DGKTERII+A  SG+EASQEA+TEYRVLG
Sbjct: 265  AMYQRYWALVIGSPREKQGIIRAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 324

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 325  PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW 365


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  305 bits (780), Expect(2) = e-128
 Identities = 164/247 (66%), Positives = 194/247 (78%), Gaps = 6/247 (2%)
 Frame = +1

Query: 79  VAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNS 246
           + +R +SR   P A     VIRVSNN+A+LG PKEGPKPRQLLSLPPFP  P        
Sbjct: 4   ILIRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLP-------- 55

Query: 247 ASLPGQPA-RVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLR 420
             LPG+ + RVTA+TW+KYYF ++  +VIQ+HFNK LVQME S+    L+E+ R M P+R
Sbjct: 56  --LPGKKSERVTAITWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMR 113

Query: 421 KISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILV 600
           KI PN VM  G++I+VPVS+AESRISKRFD IPSGTL+PNADEI YLQRL    DSAILV
Sbjct: 114 KIKPNEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILV 169

Query: 601 LNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQ 780
           LNKPP+LPVKG+LPVHNSMDALAAAALSY + +GPKLVHRLDR+SSGL LMGR+KES S 
Sbjct: 170 LNKPPRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISH 229

Query: 781 LQWLFSD 801
           L+WLFS+
Sbjct: 230 LEWLFSN 236



 Score =  182 bits (461), Expect(2) = e-128
 Identities = 84/101 (83%), Positives = 93/101 (92%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  Q+YWALVIGSP+EK+G+I APLSKVLLNDGKTER+I+AH +G +ASQEAITEYRVLG
Sbjct: 246  AKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEAITEYRVLG 305

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 306  PMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 346


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  304 bits (778), Expect(2) = e-128
 Identities = 164/246 (66%), Positives = 193/246 (78%), Gaps = 5/246 (2%)
 Frame = +1

Query: 79  VAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNS 246
           + +R +SR   P A     VIRVSNN+A+LG PKEGPKPRQLLSLPPFP  P P   KNS
Sbjct: 4   ILIRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLP--GKNS 61

Query: 247 ASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRK 423
                   RVTA++W+KYYF ++  +VIQ+HFNK LVQME S+    L+E+ R M P+RK
Sbjct: 62  E-------RVTAISWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRK 114

Query: 424 ISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVL 603
           I PN VM  G++I+VPVS+AESRISKRFD IPSGTL+PNADEI YLQRL    DSAILVL
Sbjct: 115 IKPNEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVL 170

Query: 604 NKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQL 783
           NKPP+LPVKG+LPVHNSMDALAAAALSY + +GPKLVHRLDR+SSGL LMGR+KES S L
Sbjct: 171 NKPPRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHL 230

Query: 784 QWLFSD 801
           +WLFS+
Sbjct: 231 EWLFSN 236



 Score =  182 bits (461), Expect(2) = e-128
 Identities = 84/101 (83%), Positives = 93/101 (92%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  Q+YWALVIGSP+EK+G+I APLSKVLLNDGKTER+I+AH +G +ASQEAITEYRVLG
Sbjct: 246  AKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEAITEYRVLG 305

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 306  PMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 346


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  301 bits (772), Expect(2) = e-127
 Identities = 157/241 (65%), Positives = 186/241 (77%), Gaps = 1/241 (0%)
 Frame = +1

Query: 82  AMRHFSRTSIPPAVVIRVSNN-IARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLP 258
           ++RH+SR S P   VIRVS   +A LG PK GPKPRQLLSLPPFP    P          
Sbjct: 14  SIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLP------GKHW 67

Query: 259 GQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNV 438
           G+   VTAV+W+KYYF ++  SVIQ+HFNKGLVQME ++      E+ +M P+RKI  N 
Sbjct: 68  GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNE 127

Query: 439 VMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPK 618
           VME G++I +PVS+ E RISKR+DTIPSGTL PNADEI+YL+RLV Y+DSAILVLNKPPK
Sbjct: 128 VMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPK 187

Query: 619 LPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFS 798
           +P+KG+LPVHNSMDALAAAALSY + +GPKLVHRLDRESSGL LMGR+KES S L WLFS
Sbjct: 188 VPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 247

Query: 799 D 801
           D
Sbjct: 248 D 248



 Score =  182 bits (463), Expect(2) = e-127
 Identities = 87/101 (86%), Positives = 93/101 (92%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  QRYWALVIGSP+EKQG+I APLSKVLL+DGKTERII+A  SG+EASQEA+TEYRVLG
Sbjct: 265  AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAVTEYRVLG 324

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 325  PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW 365


>gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus guttatus]
          Length = 460

 Score =  307 bits (787), Expect(2) = e-127
 Identities = 161/234 (68%), Positives = 187/234 (79%), Gaps = 4/234 (1%)
 Frame = +1

Query: 112 PPA---VVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQPARVTA 282
           PPA    V+RVSNNIA LG+PKEGPKPRQLLSLPPFP   NPL  +NS S+      VTA
Sbjct: 11  PPASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPPFPG--NPLPGRNSTSVE----HVTA 64

Query: 283 VTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLL-SEKKRMSPLRKISPNVVMEAGSK 459
           ++WLKYYF D+   VIQ HFNKGLV+ME  +   L  S + +    RKI P+ ++E G +
Sbjct: 65  ISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRGQTMSTRKIKPSEIVEEGDR 124

Query: 460 IHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLPVKGNL 639
           ++VPVS+AE+++SKRFD IPSGTL+PNADEI YLQRLV YKDSAILVLNKPPKLPVKGNL
Sbjct: 125 VYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYKDSAILVLNKPPKLPVKGNL 184

Query: 640 PVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFSD 801
           PVHNSMDALAAAALSY +++GPKLVHRLDRESSGL LMGR+KES S L WLFSD
Sbjct: 185 PVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSD 238



 Score =  175 bits (444), Expect(2) = e-127
 Identities = 83/101 (82%), Positives = 90/101 (89%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  QRYWALVIG P +K+GVI APL+KVLLNDGKTE +I++H SG+EASQEAIT YRVLG
Sbjct: 255  AMYQRYWALVIGVPNQKEGVICAPLTKVLLNDGKTEMVILSHNSGLEASQEAITRYRVLG 314

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 315  PMINGCSWIELHPLTRRKHQLRVHCAEALGTPIVGDYKYGW 355


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  304 bits (779), Expect(2) = e-125
 Identities = 156/227 (68%), Positives = 184/227 (81%), Gaps = 1/227 (0%)
 Frame = +1

Query: 124 VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQPA-RVTAVTWLKY 300
           VIRVSNNI  LG  KEG KP QLLSLPPFP  P P   K  A+ P QP+  VTA++W+KY
Sbjct: 34  VIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLP--GKKVATGPDQPSCHVTAISWIKY 91

Query: 301 YFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNVVMEAGSKIHVPVSI 480
           YF +IP SVIQ HFNKGLVQ+E+++     S++ +   LRKI  + VME G++IHVP+S+
Sbjct: 92  YFDEIPGSVIQTHFNKGLVQLEFNE--LFTSKEGQTRLLRKIKHSEVMEVGARIHVPISV 149

Query: 481 AESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMD 660
           AE+RISKR+D IPSGTLYPNADEI YLQRLV YKD AILVLNKPPKLP+KGNLPVHNSMD
Sbjct: 150 AETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPLKGNLPVHNSMD 209

Query: 661 ALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFSD 801
           ALAAAALSY +++GP+LVHRLDRESSGLHLMGR++ES S L  LFS+
Sbjct: 210 ALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSN 256



 Score =  174 bits (440), Expect(2) = e-125
 Identities = 79/101 (78%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            +T QRYWALVIGSP+EK+GVI APL+KVLL+DG+TER+++A  SG+EAS EA+TEYR+LG
Sbjct: 273  STYQRYWALVIGSPKEKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTEYRLLG 332

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSWIEL P T RKHQ+RVHCAEALGTPIVGDYKYGW
Sbjct: 333  PMINGCSWIELRPHTSRKHQIRVHCAEALGTPIVGDYKYGW 373


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  303 bits (777), Expect(2) = e-125
 Identities = 157/238 (65%), Positives = 188/238 (78%)
 Frame = +1

Query: 85  MRHFSRTSIPPAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQ 264
           +R +SR  + P VV   + N+A+LGSPKEGPKPRQLLSLPPFP  P P   K S +    
Sbjct: 12  VRLYSR--VAPQVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLP--GKKSLNA--- 64

Query: 265 PARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNVVM 444
              VTA++W+KYYF +I  SVIQ+HFNK LVQ+E       +  +    P+RKI P+ VM
Sbjct: 65  -CHVTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVM 123

Query: 445 EAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLP 624
           E G++IH+PVS+AE+ ISKRFDTIPSGTLYPNADEIEYLQRLV YKDSA+LVLNKPPK+P
Sbjct: 124 EVGARIHIPVSVAETAISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVP 183

Query: 625 VKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFS 798
           VKGN+P+HNSMDALAAAALSYG+++GPKLVHRLDRESSGL LMGR+KES + LQ LFS
Sbjct: 184 VKGNMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFS 241



 Score =  174 bits (440), Expect(2) = e-125
 Identities = 80/101 (79%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            AT QRYWALVIGSP++K+G+I A LSKVLL+DGKTER+++A  S +E S++A+TEYRVLG
Sbjct: 259  ATYQRYWALVIGSPKDKEGLISARLSKVLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLG 318

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            PTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 319  PTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 359


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
           gi|557086377|gb|ESQ27229.1| hypothetical protein
           EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  296 bits (758), Expect(2) = e-124
 Identities = 153/250 (61%), Positives = 192/250 (76%), Gaps = 1/250 (0%)
 Frame = +1

Query: 55  RSVRLRSVVAMRHFSRTSIPPAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLA 234
           R V L +V   R +SR + PP+ VIRV+NNIA+LG PK+GP PRQL+SLPPFP  P P  
Sbjct: 14  RQVYLAAVT--RRYSRVAPPPSTVIRVTNNIAQLGPPKKGPLPRQLMSLPPFPGHPLP-- 69

Query: 235 AKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MS 411
            KN+     +   VTA++W+KYY  +I    IQ+HF KGLVQME+   +    EK+  + 
Sbjct: 70  GKNAGV--DEDGHVTAISWVKYYLEEIHDKAIQSHFTKGLVQMEFRGRRDASREKQDGVR 127

Query: 412 PLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSA 591
           P++K+  N VM+ G KI +PVSIAE+RISKR+DTIPSGTLYPNADEI YLQRLV +KDSA
Sbjct: 128 PIKKVKHNEVMQIGDKIWLPVSIAETRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSA 187

Query: 592 ILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKES 771
           I+VLNKPPKLPVKGN+P+HNSMDALAAAALS+G ++GP+L+HRLDRE+SGL +MGR+KES
Sbjct: 188 IIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGKDEGPRLLHRLDRETSGLLVMGRTKES 247

Query: 772 TSQLQWLFSD 801
              L  +FSD
Sbjct: 248 IDHLHSVFSD 257



 Score =  176 bits (446), Expect(2) = e-124
 Identities = 81/101 (80%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  Q+YWALVIGSP++K+GVI AP+SKVLL+DGKT+R+++A  SG EASQEAITEYRVLG
Sbjct: 274  AMYQQYWALVIGSPKDKEGVISAPISKVLLDDGKTDRVVLARGSGFEASQEAITEYRVLG 333

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 334  PMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 374


>ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
           [Brachypodium distachyon]
          Length = 479

 Score =  283 bits (725), Expect(2) = e-123
 Identities = 145/244 (59%), Positives = 187/244 (76%), Gaps = 7/244 (2%)
 Frame = +1

Query: 88  RHFSRTSIP------PAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSA 249
           R  SR + P      P V +   +N+ARLG+PK GP+PRQLLSLPPFPA  +PL  + +A
Sbjct: 16  RRLSRLAPPAPAAAAPVVRVESGSNVARLGAPKPGPRPRQLLSLPPFPAGADPLPGRKTA 75

Query: 250 SLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKY-LLSEKKRMSPLRKI 426
           +      RV+AV+W+K+ FAD+P  V+QAHFNK  V  E SD +   +S + +   L+KI
Sbjct: 76  AAEAS-RRVSAVSWVKHCFADVPQEVVQAHFNKRQVFAECSDQEVSAVSIRSQEHHLKKI 134

Query: 427 SPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLN 606
             + VME G +IH+PVS+AE+ I KR++TIP+ TL+PN DEIEYL+RLV+YKDSAILVLN
Sbjct: 135 KHSEVMEPGMRIHLPVSVAEAEIKKRYETIPAATLHPNKDEIEYLKRLVIYKDSAILVLN 194

Query: 607 KPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQ 786
           KPPK+P+KG+LPVHNSMD LAAAALSYG+EDGPKLVHRLDR++SGL LMGR+KES ++L 
Sbjct: 195 KPPKVPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESFTRLH 254

Query: 787 WLFS 798
           WLF+
Sbjct: 255 WLFT 258



 Score =  187 bits (476), Expect(2) = e-123
 Identities = 82/98 (83%), Positives = 94/98 (95%)
 Frame = +3

Query: 867  QRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLGPTI 1046
            QRYWALVIG+P+E +GVI APL+KVLL+DGK ER+I+AHPSG++ +QEA+TEYRV+GPTI
Sbjct: 279  QRYWALVIGTPKESEGVISAPLTKVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGPTI 338

Query: 1047 NGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            NGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 339  NGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 376


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  297 bits (760), Expect(2) = e-123
 Identities = 152/243 (62%), Positives = 186/243 (76%), Gaps = 2/243 (0%)
 Frame = +1

Query: 79  VAMRHFSRTSIPPAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLP 258
           V +R +SR + PP+ VIRV+NN+A LG PK+GP PRQL+SLPPFP  P P     +    
Sbjct: 15  VLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDD 74

Query: 259 GQPA-RVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMS-PLRKISP 432
           G     VTA++W+KYYF +I    IQ HF KGLVQME+   +    EK+  + P+RKI  
Sbjct: 75  GDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAIPMRKIKH 134

Query: 433 NVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKP 612
           N VM+ G KI +PVSIAE RISKR+DTIPSGTLYPNADEI YLQRLV +KDSAI+VLNKP
Sbjct: 135 NEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKP 194

Query: 613 PKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWL 792
           PKLPVKGN+P+HNSMDALAAAALS+G+++GP+LVHRLDRE+SGL +MGR+KES   L  +
Sbjct: 195 PKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSV 254

Query: 793 FSD 801
           FSD
Sbjct: 255 FSD 257



 Score =  174 bits (441), Expect(2) = e-123
 Identities = 79/101 (78%), Positives = 92/101 (91%)
 Frame = +3

Query: 858  ATAQRYWALVIGSPREKQGVIRAPLSKVLLNDGKTERIIIAHPSGVEASQEAITEYRVLG 1037
            A  Q+YWALVIGSP+EK+G+I APLSKVLL+DGKT+R+++A  SG EASQ+AITEY+VLG
Sbjct: 274  AMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLG 333

Query: 1038 PTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 1160
            P INGCSW+EL P+T RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 334  PKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGW 374