BLASTX nr result
ID: Sinomenium22_contig00035420
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00035420
(575 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus] 65 1e-08
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] 64 2e-08
ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast)... 63 5e-08
gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea] gi|3... 63 5e-08
gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense] 63 6e-08
gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloropla... 62 1e-07
ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana s... 61 2e-07
ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea s... 61 2e-07
emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp... 61 2e-07
ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea s... 61 2e-07
ref|YP_009019781.1| RNA polymerase beta'' subunit (chloroplast) ... 60 4e-07
gb|AHE41660.1| RNA polymerase beta' subunit, partial (chloroplas... 60 4e-07
gb|AHE41656.1| RNA polymerase beta' subunit (chloroplast) [Daphn... 60 4e-07
dbj|BAO01566.1| RNA polymerase beta'' subunit (chloroplast) [Vit... 60 4e-07
dbj|BAO01482.1| RNA polymerase beta'' subunit (chloroplast) [Vit... 60 4e-07
gb|AEM44881.1| RNA polymerase beta chain [Petalonyx parryi] 60 4e-07
gb|ADO13878.1| RNA polymerase beta subunit [Ilex crenata] 60 4e-07
gb|ADD31153.1| RNA polymerase beta'' subunit protein [Ilex cornuta] 60 4e-07
gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba jap... 60 4e-07
gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liqu... 60 4e-07
>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
Length = 865
Score = 65.1 bits (157), Expect = 1e-08
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLIFMLFLV 368
+ +HH+YCEETST+VSL QFICE+LC SKN QKSG V L+ + LV
Sbjct: 605 YFLHHDYCEETSTIVSLGQFICENLCISKNGPHQKSGQVLLVHVDSLV 652
>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
Length = 774
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = -2
Query: 505 VHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLIFMLFLV 368
+HH+YCEETST+VSL QFICE+LC SKN QKSG V L+ + LV
Sbjct: 521 LHHDYCEETSTIVSLGQFICENLCISKNGPYQKSGQVLLVHVDSLV 566
>ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
gi|363413081|gb|ADA69916.2| RNA polymerase beta II
subunit (chloroplast) [Olea europaea]
Length = 1390
Score = 63.2 bits (152), Expect = 5e-08
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+S+HHNYC+ETST++SL QFICE++C +KNA KSG V L+
Sbjct: 1055 YSLHHNYCQETSTIISLGQFICENVCIAKNAPHLKSGQVILV 1096
>gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea]
gi|334084477|emb|CBR24610.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|510934394|emb|CCQ09092.1| RNA polymerase beta'' chain
(chloroplast) [Olea europaea subsp. europaea]
Length = 1394
Score = 63.2 bits (152), Expect = 5e-08
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+S+HHNYC+ETST++SL QFICE++C +KNA KSG V L+
Sbjct: 1059 YSLHHNYCQETSTIISLGQFICENVCIAKNAPHLKSGQVILV 1100
>gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense]
Length = 294
Score = 62.8 bits (151), Expect = 6e-08
Identities = 29/48 (60%), Positives = 36/48 (75%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLIFMLFLV 368
+ +HH+YCEE ST+VSL QFICE+LC SKN QKSG V L+ + LV
Sbjct: 220 YFLHHDYCEEISTIVSLGQFICENLCISKNGPHQKSGQVLLVHVDSLV 267
>gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloroplast) [Alnus
alnobetula subsp. sinuata]
Length = 1273
Score = 61.6 bits (148), Expect = 1e-07
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -2
Query: 505 VHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+HHNYCEETST++SL QFICE++C +KN Q KSG V ++
Sbjct: 1022 LHHNYCEETSTIISLGQFICENVCIAKNGPQLKSGQVLIV 1061
>ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana subsp. woodiana]
gi|334084649|emb|CBS29340.1| RNA polymerase beta'' chain
[Olea woodiana subsp. woodiana]
Length = 1394
Score = 61.2 bits (147), Expect = 2e-07
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYC+ETST++SL QFICE++C +KNA KSG V L+
Sbjct: 1059 YFLHHNYCQETSTIISLGQFICENVCIAKNAPHLKSGQVLLV 1100
>ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
gi|334084940|emb|CBJ04288.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
Length = 1394
Score = 60.8 bits (146), Expect = 2e-07
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYC+ETST++SL QFICE++C +KNA KSG V L+
Sbjct: 1059 YFLHHNYCQETSTIISLGQFICENVCIAKNAPHLKSGQVILV 1100
>emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
Length = 1394
Score = 60.8 bits (146), Expect = 2e-07
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYC+ETST++SL QFICE++C +KNA KSG V L+
Sbjct: 1059 YFLHHNYCQETSTIISLGQFICENVCIAKNAPHLKSGQVILV 1100
>ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
gi|334701878|ref|YP_004564487.1| RNA polymerase beta''
chain [Olea europaea subsp. maroccana]
gi|328795423|emb|CBR30304.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|334084391|emb|CBR23819.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
gi|334084854|emb|CBS29226.1| RNA polymerase beta'' chain
[Olea europaea subsp. maroccana]
gi|334085026|emb|CBR23728.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
Length = 1394
Score = 60.8 bits (146), Expect = 2e-07
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYC+ETST++SL QFICE++C +KNA KSG V L+
Sbjct: 1059 YFLHHNYCQETSTIISLGQFICENVCIAKNAPHLKSGQVILV 1100
>ref|YP_009019781.1| RNA polymerase beta'' subunit (chloroplast) [Vitis rotundifolia]
gi|586947402|gb|AHJ91199.1| RNA polymerase beta'' subunit
(chloroplast) [Vitis rotundifolia]
Length = 1394
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1057 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1098
>gb|AHE41660.1| RNA polymerase beta' subunit, partial (chloroplast) [Exbucklandia
populnea]
Length = 1368
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1033 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1074
>gb|AHE41656.1| RNA polymerase beta' subunit (chloroplast) [Daphniphyllum oldhamii]
Length = 1392
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1055 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1096
>dbj|BAO01566.1| RNA polymerase beta'' subunit (chloroplast) [Vitis vinifera subsp.
caucasica] gi|550533809|dbj|BAO01650.1| RNA polymerase
beta'' subunit (chloroplast) [Vitis vinifera subsp.
caucasica]
Length = 1394
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1057 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1098
>dbj|BAO01482.1| RNA polymerase beta'' subunit (chloroplast) [Vitis vinifera subsp.
caucasica]
Length = 1400
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1063 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1104
>gb|AEM44881.1| RNA polymerase beta chain [Petalonyx parryi]
Length = 515
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 300 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 341
>gb|ADO13878.1| RNA polymerase beta subunit [Ilex crenata]
Length = 1182
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1041 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1082
>gb|ADD31153.1| RNA polymerase beta'' subunit protein [Ilex cornuta]
Length = 1384
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1055 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1096
>gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba japonica]
Length = 1390
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1055 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1096
>gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liquidambar styraciflua]
Length = 1390
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -2
Query: 511 FSVHHNYCEETSTMVSLEQFICEDLCTSKNAKQQKSGMVRLI 386
+ +HHNYCEETST++SL QFICE++C +KN KSG V ++
Sbjct: 1055 YFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV 1096