BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00033740
         (2331 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   610   e-172
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   593   e-166
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              585   e-164
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   572   e-160
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   567   e-159
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   565   e-158
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   564   e-158
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   564   e-158
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   555   e-155
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   555   e-155
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   540   e-151
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   540   e-151
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   537   e-150
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   531   e-148
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   525   e-146
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   521   e-145
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   518   e-144
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   513   e-142
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   504   e-140
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   501   e-139

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  610 bits (1574), Expect = e-172
 Identities = 313/589 (53%), Positives = 417/589 (70%), Gaps = 8/589 (1%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVK-----DDNVVQDTVS-DGFGAPVGSLAACSISEAAYSALDQPIS 2169
            RNAYGNQLVQFSY ++      D + +DT + D  G PVGS++AC+ISEAAYSALDQPIS
Sbjct: 883  RNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPIS 942

Query: 2168 ILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSD 1989
            +L  SPLL LK VLE G ++++A RT SLFLSK +E+  +G EYGA+ +KN LE++LFSD
Sbjct: 943  LLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSD 1002

Query: 1988 IVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKA 1809
            IVSTVMI FS Q     HFSPW+CHFHVC+E  +K+ L   SII+AL   C S+    K 
Sbjct: 1003 IVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKI 1062

Query: 1808 NPPKWHILSRGCYVVEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGF 1629
            N P   I S+ C+V + +KE    FCITV++  S  S + ++TVRDLV+PFLL  V++G 
Sbjct: 1063 NLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGL 1121

Query: 1628 LEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWK 1449
            L+ KKVDILWND P  S   ++  G L+++VY+S  C  +  W +L++ CL+IM +IDW+
Sbjct: 1122 LDVKKVDILWNDNP-DSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWE 1180

Query: 1448 RSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLN 1269
            RSHPD+++DIF VYGID  W+YF+  LK A+SDI K++LPEH+LLVA CLS TGEFVGLN
Sbjct: 1181 RSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLN 1240

Query: 1268 SKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGG 1089
            +KG+ +Q++L SISSPFMQ CFS+PG+ FIKA K  V D+L G+LDA+AWG+   +G+GG
Sbjct: 1241 AKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGG 1300

Query: 1088 QFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN--H 915
             FDI+YS KGHE+A P ++Y +  +     E+N+KVKVP +      K  AQ +  N   
Sbjct: 1301 HFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDS 1360

Query: 914  ASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFH 735
            AS+G  +L+ IS SV++   S ND+  +S  L+ IL KY I+H L+E +K+ L  AL FH
Sbjct: 1361 ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFH 1420

Query: 734  PQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            P+R++K+G G QNIK+  H K+  +RCF L+R DGT  DFSY KCV GA
Sbjct: 1421 PRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGA 1469


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  593 bits (1528), Expect = e-166
 Identities = 304/598 (50%), Positives = 420/598 (70%), Gaps = 17/598 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDD---------NVVQD--TVSDGFGA-PVGSLAACSISEAAYSA 2187
            RN+YG+ +VQF Y +  D          ++ +  T+ +G G  PVGSL+AC+ISEAAYSA
Sbjct: 866  RNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSA 925

Query: 2186 LDQPISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLE 2007
            LDQP+S+L TSPLL LK V+E G KR++A +T +LFLS  + R  +G EY A+ +KN LE
Sbjct: 926  LDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLE 985

Query: 2006 RVLFSDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSS 1827
            R+ FSDIV+TV I FS Q     HF+PW+CHFHVCK+ M+++ L VQSII++L+ +C ++
Sbjct: 986  RLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTA 1045

Query: 1826 EEIQKANPPKWHILSRG--CYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPF 1656
            + + K + P   I S G  C  ++   E D TFCITV  VE S  S + ++ +RD+V+P+
Sbjct: 1046 KTMWKISLPDMQITSNGRACSHIDMPNEDD-TFCITVTIVEYSKSSHMELDVIRDMVIPY 1104

Query: 1655 LLRKVIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCL 1476
            LL  VI+GF E KKVDILW D    SK H++ CGEL+++V++S    I K W +L+N CL
Sbjct: 1105 LLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCL 1164

Query: 1475 RIMHLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLS 1296
            +IM +IDW RSHPD++  +   YGID  W++F+  LK A+SD  K+IL EH+L+VA+CLS
Sbjct: 1165 QIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLS 1224

Query: 1295 VTGEFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWG 1116
             TGEFVGLNSKG++QQR+ A +SSPFMQACFSNP ASF+KAAKTG  DDL GT+DA+AWG
Sbjct: 1225 ATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWG 1284

Query: 1115 RQVPMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSA 936
            R   +GTGGQFDIIYS K   +A PV+VY +  +S+ SQ+++V+ +VP +L     K+ +
Sbjct: 1285 RIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSISSQKQDVEFEVPKALNFKSEKYGS 1344

Query: 935  QSLPL--NHASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKS 762
              +    + AS     ++    S+ +E+ + +D+  +S +LR ILHKY IDH L+E + +
Sbjct: 1345 LLIDALGDSASEELKKIETKRRSIWRELLTLDDIQRLSRALRNILHKYPIDHRLSEADWN 1404

Query: 761  ILTEALQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
             L  AL FHP+R++K+GSG Q IK+G HP+H  +RCF L+R DGTIVDFSY KCV+GA
Sbjct: 1405 TLMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARCFSLVRTDGTIVDFSYHKCVLGA 1462


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  585 bits (1509), Expect = e-164
 Identities = 304/589 (51%), Positives = 408/589 (69%), Gaps = 8/589 (1%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVK-----DDNVVQDTVS-DGFGAPVGSLAACSISEAAYSALDQPIS 2169
            RNAYGNQLVQFSY ++      D + +DT + D  G PVGS++AC+ISEAAYSALDQPIS
Sbjct: 752  RNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPIS 811

Query: 2168 ILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSD 1989
            +L  SPLL LK VLE G ++++A RT SLFLSK +E+  +G EYGA+ +KN LE++LFSD
Sbjct: 812  LLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSD 871

Query: 1988 IVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKA 1809
            IVSTVMI FS Q     HFSPW+CHFHVC+E  +K+ L   SII+AL   C S+    K 
Sbjct: 872  IVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKI 931

Query: 1808 NPPKWHILSRGCYVVEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGF 1629
            N P   I S+ C+V + +KE    FCITV++  S  S + ++TVRDLV+PFLL  V++G 
Sbjct: 932  NLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGC 990

Query: 1628 LEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWK 1449
               K  D+L           ++  G L+++VY+S  C  +  W +L++ CL+IM +IDW+
Sbjct: 991  C-IKNSDVL-----------KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWE 1038

Query: 1448 RSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLN 1269
            RSHPD+++DIF VYGID  W+YF+  LK A+SDI K++LPEH+LLVA CLS TGEFVGLN
Sbjct: 1039 RSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLN 1098

Query: 1268 SKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGG 1089
            +KG+ +Q++L SISSPFMQ CFS+PG+ FIKA K  V D+L G+LDA+AWG+   +G+GG
Sbjct: 1099 AKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGG 1158

Query: 1088 QFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN--H 915
             FDI+YS KGHE+A P ++Y +  +     E+N+KVKVP +      K  AQ +  N   
Sbjct: 1159 HFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDS 1218

Query: 914  ASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFH 735
            AS+G  +L+ IS SV++   S ND+  +S  L+ IL KY I+H L+E +K+ L  AL FH
Sbjct: 1219 ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFH 1278

Query: 734  PQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            P+R++K+G G QNIK+  H K+  +RCF L+R DGT  DFSY KCV GA
Sbjct: 1279 PRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGA 1327


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
            gi|462406650|gb|EMJ12114.1| hypothetical protein
            PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  572 bits (1475), Expect = e-160
 Identities = 297/591 (50%), Positives = 397/591 (67%), Gaps = 10/591 (1%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDD--------NVVQDTVSDGFGA-PVGSLAACSISEAAYSALDQ 2178
            RNAYGNQLVQFSY +  D        +    T  DG G  PVGSL+AC++SEAAYSALDQ
Sbjct: 752  RNAYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSEAAYSALDQ 811

Query: 2177 PISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVL 1998
            P+S+L TSPLL LKN+LE G K++SA +T SLFLSK + R  +G EYGA+ +KN L  + 
Sbjct: 812  PVSLLETSPLLNLKNILECGSKKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKNHLVGLT 871

Query: 1997 FSDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEI 1818
            FSDIVSTVMI FS Q+     FSPW+ HFH+CKE +RK+ L V S++++L   C S+   
Sbjct: 872  FSDIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPE 931

Query: 1817 QKANPPKWHILSRGCYVVEPQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKV 1641
             K       I S+GC   +     D TFCITV + E S  S   ++  RDLV+PFLL  V
Sbjct: 932  LKIVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTV 991

Query: 1640 IRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHL 1461
            ++GFLE KKVDILWND P  SK      GEL+++V +S     R+ W++L++ CL+IM L
Sbjct: 992  VKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDL 1051

Query: 1460 IDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEF 1281
            IDW RSHPD+++D    YGID  W+YF+  L+ A +DI K ILP+H++LVADCLS TGEF
Sbjct: 1052 IDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEF 1111

Query: 1280 VGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPM 1101
            VGLN+KGI QQ+   S+SSPF+QACFS+PGA FIKAAK GV D+L G+++A+AWG   P 
Sbjct: 1112 VGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPS 1171

Query: 1100 GTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPL 921
            GTG QFDI+YS +G  ++ P+N YD+  + + S  +N   +   +  N  +K    S+ L
Sbjct: 1172 GTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSRENA-FETSKAWNNTLDKCDVTSIGL 1230

Query: 920  NHASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQ 741
              +       + +  SV+++  + ND+   + +L+ IL KY I+  L E +KSIL  AL 
Sbjct: 1231 EKS-------ESVFKSVIRKYLTINDIQKWTQTLKRILRKYDINESLTEGDKSILKMALH 1283

Query: 740  FHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            FHP + DK+GSG+Q+IK+G+HPKH+ +RCFML+R D T  DFSY KCV+GA
Sbjct: 1284 FHPHKVDKMGSGVQDIKVGQHPKHENARCFMLVRIDRTEEDFSYHKCVLGA 1334


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  567 bits (1461), Expect = e-159
 Identities = 291/582 (50%), Positives = 406/582 (69%), Gaps = 1/582 (0%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSP 2151
            RNAYGNQ+VQFSY ++  +     + D    PVGSL+AC+ISEAAYSALDQPIS+L TSP
Sbjct: 844  RNAYGNQIVQFSYNIEGTSTPTGEIGD---QPVGSLSACAISEAAYSALDQPISLLETSP 900

Query: 2150 LLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVM 1971
            LL LKNVLE G K+++A +T SLFLS  + +  +G EYGA+ +KN LE ++ SDIVST M
Sbjct: 901  LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM 960

Query: 1970 IEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWH 1791
            I +S QT  M HFSPWICHFHV KE M++ GL   SII++L   C ++    K + P   
Sbjct: 961  IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDML 1020

Query: 1790 ILSRGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKK 1614
            I ++ C  +  QKE +  FC+TV  VE    + + +ET++  V+PFLL+ V++GF E KK
Sbjct: 1021 ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1080

Query: 1613 VDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPD 1434
            VDILW D   ASKSH++  GEL+++V +S  C I   W+ L+N C +IM +IDW RSHPD
Sbjct: 1081 VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD 1140

Query: 1433 DLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIK 1254
            ++      YGID   ++F+  L+ A+SD  K+ILPEH+L+VA+ LS TGEFVGLN+KG+ 
Sbjct: 1141 NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA 1200

Query: 1253 QQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDII 1074
             QR  +S+SSPF+QA FSNPGASFIKAAK G  D+L G++DA+ WG+   +GTGG FDII
Sbjct: 1201 LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260

Query: 1073 YSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVN 894
            YSG+G  ++ PV+VY++ S   +S ++N K+KV  +   + +K  A+         G+++
Sbjct: 1261 YSGEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLD 1319

Query: 893  LKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKL 714
             + IS  V+++  ++NDV+ +S +L++ILHKYSI   L+E +K+ +  AL FHP+RN+KL
Sbjct: 1320 FETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKL 1379

Query: 713  GSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            G    +I++  HP+HQ SRCF L+R+DG+I DFSY KCV+GA
Sbjct: 1380 GIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGA 1421


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  565 bits (1455), Expect = e-158
 Identities = 298/592 (50%), Positives = 400/592 (67%), Gaps = 11/592 (1%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF-------GAPVGSLAACSISEAAYSALDQPI 2172
            RNAYGNQLVQF Y +  D    ++ S+         G PVGSLAAC+ISEAAYSALDQPI
Sbjct: 862  RNAYGNQLVQFCYDI--DRPTSESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQPI 919

Query: 2171 SILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFS 1992
            S+L  SPLL LK VLE G KR S  +TFSLFLS+ + +  YG EYGA+ +KN LERV+F 
Sbjct: 920  SLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFK 979

Query: 1991 DIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQK 1812
            DIVS+VMI FS       HFSPW+CHFHVCKE ++K+ L + S+I +LN  C S  +  +
Sbjct: 980  DIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGR 1039

Query: 1811 ANPPKWHILSRGCYVVEPQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVIR 1635
             N P   I+++ C + +   E   T C+TV + E +  S + ++ ++DL++ FLL  VIR
Sbjct: 1040 MNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIR 1099

Query: 1634 GFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLID 1455
            GF E  +VDI WND P   K   ++ GEL+++V +S     R  W  L+N CL IM LID
Sbjct: 1100 GFTEIDRVDITWNDRPKVPKPRCSH-GELYLRVTMSGEGNSR-FWATLMNNCLPIMDLID 1157

Query: 1454 WKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVG 1275
            W RSHPD+ + +   YGID  W+YF+  L+ A  D+ K+I  EH+LLV++ LS TGEFVG
Sbjct: 1158 WTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVG 1217

Query: 1274 LNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGT 1095
            LN KG+  QR+ A + +PFMQACFS+PGA  IKAAK G+KD+L G+LDA+AWGR   +GT
Sbjct: 1218 LNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGT 1277

Query: 1094 GGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKN-LCNKWSAQSLPLN 918
            GGQFDI+YSGKGHE+  PV+VY++       +++N K++  S  KN +  K+SAQ +  N
Sbjct: 1278 GGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIE--SLDKNTISEKYSAQLMLKN 1335

Query: 917  HAS--RGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEAL 744
              S  +G   L  +S S++++  + ND+  +S +LR ILHKYS++  LNE +KS L  AL
Sbjct: 1336 GGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMAL 1395

Query: 743  QFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
             FHP R++K+G G Q+IK+G H K+Q +RCF+LIR DGT  DFSY KCV+GA
Sbjct: 1396 YFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGA 1447


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  564 bits (1453), Expect = e-158
 Identities = 290/582 (49%), Positives = 405/582 (69%), Gaps = 1/582 (0%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSP 2151
            RNAYGNQ+VQFSY ++  +     +    G  VGSL+AC+ISEAAYSALDQPIS+L TSP
Sbjct: 844  RNAYGNQIVQFSYNIEGTSTPTGEIG---GQSVGSLSACAISEAAYSALDQPISLLETSP 900

Query: 2150 LLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVM 1971
            LL LKNVLE G K+++A +T SLFLS  + +  +G EYGA+ +KN LE ++ SDIVST M
Sbjct: 901  LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM 960

Query: 1970 IEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWH 1791
            I +S QT  M HFSPWICHFHV KE M++ GL   SII++L   C ++    K + P   
Sbjct: 961  IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDML 1020

Query: 1790 ILSRGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKK 1614
            I ++ C  +  QKE +  FC+TV  VE    + + +ET++  V+PFLL+ V++GF E KK
Sbjct: 1021 ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1080

Query: 1613 VDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPD 1434
            VDILW D   ASKSH++  GEL+++V +S  C I   W+ L+N C +IM +IDW RSHPD
Sbjct: 1081 VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD 1140

Query: 1433 DLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIK 1254
            ++      YGID   ++F+  L+ A+SD  K+ILPEH+L+VA+ LS TGEFVGLN+KG+ 
Sbjct: 1141 NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA 1200

Query: 1253 QQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDII 1074
             QR  +S+SSPF+QA FSNPGASFIKAAK G  D+L G++DA+ WG+   +GTGG FDII
Sbjct: 1201 LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260

Query: 1073 YSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVN 894
            YSG+G  ++ PV+VY++ S   +S ++N K+KV  +   + +K  A+         G+++
Sbjct: 1261 YSGEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLD 1319

Query: 893  LKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKL 714
             + IS  V+++  ++NDV+ +S +L++ILHKYSI   L+E +K+ +  AL FHP+RN+KL
Sbjct: 1320 FETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKL 1379

Query: 713  GSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            G    +I++  HP+HQ SRCF L+R+DG+I DFSY KCV+GA
Sbjct: 1380 GIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGA 1421


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  564 bits (1453), Expect = e-158
 Identities = 290/582 (49%), Positives = 405/582 (69%), Gaps = 1/582 (0%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSP 2151
            RNAYGNQ+VQFSY ++  +     +    G  VGSL+AC+ISEAAYSALDQPIS+L TSP
Sbjct: 882  RNAYGNQIVQFSYNIEGTSTPTGEIG---GQSVGSLSACAISEAAYSALDQPISLLETSP 938

Query: 2150 LLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVM 1971
            LL LKNVLE G K+++A +T SLFLS  + +  +G EYGA+ +KN LE ++ SDIVST M
Sbjct: 939  LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM 998

Query: 1970 IEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWH 1791
            I +S QT  M HFSPWICHFHV KE M++ GL   SII++L   C ++    K + P   
Sbjct: 999  IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDML 1058

Query: 1790 ILSRGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKK 1614
            I ++ C  +  QKE +  FC+TV  VE    + + +ET++  V+PFLL+ V++GF E KK
Sbjct: 1059 ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1118

Query: 1613 VDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPD 1434
            VDILW D   ASKSH++  GEL+++V +S  C I   W+ L+N C +IM +IDW RSHPD
Sbjct: 1119 VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD 1178

Query: 1433 DLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIK 1254
            ++      YGID   ++F+  L+ A+SD  K+ILPEH+L+VA+ LS TGEFVGLN+KG+ 
Sbjct: 1179 NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA 1238

Query: 1253 QQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDII 1074
             QR  +S+SSPF+QA FSNPGASFIKAAK G  D+L G++DA+ WG+   +GTGG FDII
Sbjct: 1239 LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1298

Query: 1073 YSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVN 894
            YSG+G  ++ PV+VY++ S   +S ++N K+KV  +   + +K  A+         G+++
Sbjct: 1299 YSGEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLD 1357

Query: 893  LKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKL 714
             + IS  V+++  ++NDV+ +S +L++ILHKYSI   L+E +K+ +  AL FHP+RN+KL
Sbjct: 1358 FETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKL 1417

Query: 713  GSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            G    +I++  HP+HQ SRCF L+R+DG+I DFSY KCV+GA
Sbjct: 1418 GIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGA 1459


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  555 bits (1431), Expect = e-155
 Identities = 294/595 (49%), Positives = 396/595 (66%), Gaps = 14/595 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF--------GAPVGSLAACSISEAAYSALDQP 2175
            RNAYGNQ+VQFSY   +         D          G PVGSLAAC+ISEAAYSALDQP
Sbjct: 625  RNAYGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQP 684

Query: 2174 ISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLF 1995
            +S L +SPLL LK +LESG    S  +T S+FLSK + RW +G EYGA+ +K  LER+L 
Sbjct: 685  VSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 744

Query: 1994 SDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQ 1815
            S++VSTVMI FS +T    H  PW+CHFH+ KE ++ + L ++SI++ALN    ++    
Sbjct: 745  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKG 804

Query: 1814 KANPPKWHILSRGCYVVEPQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVI 1638
              + P  HI  + C V E +KE     CITV+V E S     L++T+RD+V+PFLL  VI
Sbjct: 805  GNDLPNLHITCKDCSVAEARKEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVI 863

Query: 1637 RGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLI 1458
            +GF  FKKVDILW +LP  SKS     GEL+++V++SESC+  K WN L++ CL+I  LI
Sbjct: 864  KGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLI 923

Query: 1457 DWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFV 1278
            DW+RS+PDD++D+   YGIDVAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV
Sbjct: 924  DWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFV 983

Query: 1277 GLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMG 1098
             L++KG+  QR  A + SPFMQACFSNPG SF++AAK G+ D+L G+L+++AWG+   +G
Sbjct: 984  PLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIG 1043

Query: 1097 TGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN 918
            TG  FDIIYSGKG+E A P++VY +  N + S    VKV +             +SL   
Sbjct: 1044 TGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDED-----GGMDGKSLARR 1098

Query: 917  HASRGHVNLK-CISDSVVKEIH---SWNDVVTMSISLREILHKYSIDHFLNENEKSILTE 750
                  +N K C S+  + ++    S+ND+  +S SL+++L KY+ID  LNE +K I   
Sbjct: 1099 LDRLDDLNKKSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMM 1158

Query: 749  ALQFHPQRNDKLGSGL-QNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            ALQFHP+RN+K+G G  Q IKIG H +++ SRCFML+R DG++ DFSYRKC+  A
Sbjct: 1159 ALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHA 1213


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  555 bits (1431), Expect = e-155
 Identities = 294/595 (49%), Positives = 396/595 (66%), Gaps = 14/595 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF--------GAPVGSLAACSISEAAYSALDQP 2175
            RNAYGNQ+VQFSY   +         D          G PVGSLAAC+ISEAAYSALDQP
Sbjct: 838  RNAYGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQP 897

Query: 2174 ISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLF 1995
            +S L +SPLL LK +LESG    S  +T S+FLSK + RW +G EYGA+ +K  LER+L 
Sbjct: 898  VSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 957

Query: 1994 SDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQ 1815
            S++VSTVMI FS +T    H  PW+CHFH+ KE ++ + L ++SI++ALN    ++    
Sbjct: 958  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKG 1017

Query: 1814 KANPPKWHILSRGCYVVEPQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVI 1638
              + P  HI  + C V E +KE     CITV+V E S     L++T+RD+V+PFLL  VI
Sbjct: 1018 GNDLPNLHITCKDCSVAEARKEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVI 1076

Query: 1637 RGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLI 1458
            +GF  FKKVDILW +LP  SKS     GEL+++V++SESC+  K WN L++ CL+I  LI
Sbjct: 1077 KGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLI 1136

Query: 1457 DWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFV 1278
            DW+RS+PDD++D+   YGIDVAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV
Sbjct: 1137 DWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFV 1196

Query: 1277 GLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMG 1098
             L++KG+  QR  A + SPFMQACFSNPG SF++AAK G+ D+L G+L+++AWG+   +G
Sbjct: 1197 PLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIG 1256

Query: 1097 TGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN 918
            TG  FDIIYSGKG+E A P++VY +  N + S    VKV +             +SL   
Sbjct: 1257 TGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDED-----GGMDGKSLARR 1311

Query: 917  HASRGHVNLK-CISDSVVKEIH---SWNDVVTMSISLREILHKYSIDHFLNENEKSILTE 750
                  +N K C S+  + ++    S+ND+  +S SL+++L KY+ID  LNE +K I   
Sbjct: 1312 LDRLDDLNKKSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMM 1371

Query: 749  ALQFHPQRNDKLGSGL-QNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            ALQFHP+RN+K+G G  Q IKIG H +++ SRCFML+R DG++ DFSYRKC+  A
Sbjct: 1372 ALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHA 1426


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  540 bits (1392), Expect = e-151
 Identities = 284/595 (47%), Positives = 389/595 (65%), Gaps = 14/595 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF--------GAPVGSLAACSISEAAYSALDQP 2175
            RNAYGNQ+VQFSY   +         +          G PVGSLAAC+ISEAAY ALDQP
Sbjct: 838  RNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQP 897

Query: 2174 ISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLF 1995
            +S L +SPLL LK +LESG    +  +T S+FLSK + RW +G EYGA+ +K  LER+L 
Sbjct: 898  VSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 957

Query: 1994 SDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQ 1815
            S++VSTVMI FS +T    H  PW+CHFH+ KE ++ + L ++S+++ALN    ++    
Sbjct: 958  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKA 1017

Query: 1814 KANPPKWHILSRGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVI 1638
              + P  HI  + C V E QKE     CITV+ VE S     L++T+RD+V+PFLL  VI
Sbjct: 1018 GNDLPNLHITCKDCSVAEVQKEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVI 1076

Query: 1637 RGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLI 1458
            +GF  FKKVDILW +LP  SKS     GEL+++V++SESC+  K WN L++ CL+I  LI
Sbjct: 1077 KGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLI 1136

Query: 1457 DWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFV 1278
            DW+RS+PDD++D+   YGIDVAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV
Sbjct: 1137 DWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFV 1196

Query: 1277 GLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMG 1098
             L++KG+  QR  A + SPFMQACF+NPG SF++AAK G+ DDL G+L+++AWG+   +G
Sbjct: 1197 PLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIG 1256

Query: 1097 TGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN 918
            TG  FDI+YSGKG+E+A  +NVY +  N +     NVKV +              SL   
Sbjct: 1257 TGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKD-----GGMDGMSLVRR 1311

Query: 917  HASRGHVNLKC----ISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTE 750
                  ++ K     +S + ++   S+ND+  +S SL+++L KY I   LNE +K +   
Sbjct: 1312 LDRLDDLDKKSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMM 1371

Query: 749  ALQFHPQRNDKLGSGL-QNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            ALQFHP+RN+K+G G  + IKIG H + + SRCFM++R D T+ DFSYRKC+  A
Sbjct: 1372 ALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHA 1426


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  540 bits (1392), Expect = e-151
 Identities = 284/595 (47%), Positives = 389/595 (65%), Gaps = 14/595 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF--------GAPVGSLAACSISEAAYSALDQP 2175
            RNAYGNQ+VQFSY   +         +          G PVGSLAAC+ISEAAY ALDQP
Sbjct: 530  RNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQP 589

Query: 2174 ISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLF 1995
            +S L +SPLL LK +LESG    +  +T S+FLSK + RW +G EYGA+ +K  LER+L 
Sbjct: 590  VSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 649

Query: 1994 SDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQ 1815
            S++VSTVMI FS +T    H  PW+CHFH+ KE ++ + L ++S+++ALN    ++    
Sbjct: 650  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKA 709

Query: 1814 KANPPKWHILSRGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVI 1638
              + P  HI  + C V E QKE     CITV+ VE S     L++T+RD+V+PFLL  VI
Sbjct: 710  GNDLPNLHITCKDCSVAEVQKEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVI 768

Query: 1637 RGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLI 1458
            +GF  FKKVDILW +LP  SKS     GEL+++V++SESC+  K WN L++ CL+I  LI
Sbjct: 769  KGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLI 828

Query: 1457 DWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFV 1278
            DW+RS+PDD++D+   YGIDVAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV
Sbjct: 829  DWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFV 888

Query: 1277 GLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMG 1098
             L++KG+  QR  A + SPFMQACF+NPG SF++AAK G+ DDL G+L+++AWG+   +G
Sbjct: 889  PLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIG 948

Query: 1097 TGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN 918
            TG  FDI+YSGKG+E+A  +NVY +  N +     NVKV +              SL   
Sbjct: 949  TGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKD-----GGMDGMSLVRR 1003

Query: 917  HASRGHVNLKC----ISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTE 750
                  ++ K     +S + ++   S+ND+  +S SL+++L KY I   LNE +K +   
Sbjct: 1004 LDRLDDLDKKSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMM 1063

Query: 749  ALQFHPQRNDKLGSGL-QNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            ALQFHP+RN+K+G G  + IKIG H + + SRCFM++R D T+ DFSYRKC+  A
Sbjct: 1064 ALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHA 1118


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  537 bits (1383), Expect = e-150
 Identities = 284/584 (48%), Positives = 391/584 (66%), Gaps = 3/584 (0%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSP 2151
            RN+YG+ +VQF YG  +        S+  G PVGSL+AC+ISEAAYSALDQPIS+L TSP
Sbjct: 809  RNSYGSHVVQFYYGTDEGT------SEIAGQPVGSLSACAISEAAYSALDQPISLLETSP 862

Query: 2150 LLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVM 1971
            LL LKN LE G K+    +T  L+LS+ + R  +G EY A+ +KN LE ++FSDIVSTVM
Sbjct: 863  LLNLKNALECGSKKRQGGQTMLLYLSRRLGRQRHGYEYAALEVKNYLEALMFSDIVSTVM 922

Query: 1970 IEFSQQTCDMVH---FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPP 1800
            I F+ Q         FSPW        E +R++ LTVQS+I +L     +S +  K   P
Sbjct: 923  ITFTSQAGSQKSQKSFSPW--------EILRRRRLTVQSVINSLYERHSTSRKGSKVKLP 974

Query: 1799 KWHILSRGCYVVEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEF 1620
               I S+ C V   ++E + T CITV++E S  SV+ + TV+DL++PFLL  +++GF E 
Sbjct: 975  NLRIRSKDCSVPATREEDNDTCCITVSIECSKNSVIQLITVQDLLIPFLLETIVKGFREI 1034

Query: 1619 KKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSH 1440
            +KVDILW+D    SK+  +  GEL++KV +S    ++  W+ L+N CLRIM LIDW RSH
Sbjct: 1035 EKVDILWSDRSNTSKATRDSSGELYLKVSMSGDSGVKSYWSTLMNDCLRIMDLIDWSRSH 1094

Query: 1439 PDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKG 1260
            P+++ +   VYGID  W++F+  L+ AVSD+ K+ILPEH+LLVA+ LSVTG FVGL  KG
Sbjct: 1095 PENVNEFCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSVTGNFVGLTPKG 1154

Query: 1259 IKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFD 1080
            + +QR+ AS+++PF QACFSNP A FIKAAK  V D L GTLDA+AWG   P+GTGGQF+
Sbjct: 1155 LARQREHASVATPFSQACFSNPAACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFE 1214

Query: 1079 IIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGH 900
            +++SGKGHEV  P+NVYDM +  +    + V  + P +  +   K+ A  L     S+G 
Sbjct: 1215 LVFSGKGHEVDKPINVYDMLATGISPDVQGVN-ETPDAKNHRSVKFGALLLYDKSVSQGL 1273

Query: 899  VNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRND 720
              L  IS   +K++   +D+  +S +L +IL+KY I+  L+  +KS L  AL FHP+ ++
Sbjct: 1274 KKLG-ISKDRIKKLFKLDDIWILSNALAKILNKYPINQSLDHKDKSTLMIALYFHPRIDE 1332

Query: 719  KLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            K+G+G Q+IK+  HPKHQ SRCF+L+R DGT+ DFSYRKCV+GA
Sbjct: 1333 KIGTGFQDIKVAYHPKHQSSRCFVLVRADGTVEDFSYRKCVLGA 1376


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  531 bits (1369), Expect = e-148
 Identities = 290/590 (49%), Positives = 374/590 (63%), Gaps = 9/590 (1%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQ--------DTVSDGFGAPVGSLAACSISEAAYSALDQP 2175
            R+AYGNQL+QFSY + +    +        D      G PVGSLAACSISEAAYSALDQP
Sbjct: 850  RSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDGMAGKPVGSLAACSISEAAYSALDQP 909

Query: 2174 ISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLF 1995
            IS+L  SPLL LKNVLE G K+++AH++ SLFLS+ + R  +G EYGA+ +++ LER+LF
Sbjct: 910  ISLLEKSPLLNLKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGALKVQDHLERLLF 969

Query: 1994 SDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQ 1815
            SDIVS   I FS Q+     FSPW+CHFHV KE M+K+ L V SII  LN  C S+    
Sbjct: 970  SDIVSVSRIIFSSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINILNGRCKSN---- 1025

Query: 1814 KANPPKWHILSRGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVI 1638
              N P   I  + C + +  +E + T CITV  VE S  S   + T++DL++PFLL  V+
Sbjct: 1026 -TNLPNVQISCKSCSIADNHREKEETLCITVTIVERSKNSSTRLATIQDLMIPFLLETVL 1084

Query: 1637 RGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLI 1458
            +G +E  KVDILW D P  SK+H    GEL+++V +S   E  + WNLL++ CL IM +I
Sbjct: 1085 KGLMEINKVDILWKDWPRISKTHNQPYGELYLRVSMSADSEKTRLWNLLMDYCLPIMDMI 1144

Query: 1457 DWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFV 1278
            DW  S PD++ D    YGID  W++F++RL+ A+SD+ KS+LPEHMLLVA+CLSVTGEFV
Sbjct: 1145 DWTCSRPDNVRDFSLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLSVTGEFV 1204

Query: 1277 GLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMG 1098
            GLN+KG K+QR+ AS+SSPF+QACFS+PG  FIKAAK GVKDDL G+LDA+AWG+   +G
Sbjct: 1205 GLNAKGWKRQREDASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVG 1264

Query: 1097 TGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN 918
            T GQFDI+YSGK                 L    K VK+K P S   L            
Sbjct: 1265 T-GQFDIVYSGK-------------VKLLLFLLVKRVKLKTPPSFVVL------------ 1298

Query: 917  HASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQF 738
                                      V +   L  +L  YS+D  LNE +K  LT AL F
Sbjct: 1299 -------------------------TVFLETPLINLLVWYSVDQQLNEADKCTLTMALYF 1333

Query: 737  HPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            HP++ +K+GSG ++IK+ +HP++Q SRCF L+R DGTI DFSYRKCV GA
Sbjct: 1334 HPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGA 1383


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  525 bits (1352), Expect = e-146
 Identities = 281/607 (46%), Positives = 384/607 (63%), Gaps = 26/607 (4%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF--GAPVGSLAACSISEAAYSALDQPISILVT 2157
            RN YGNQL+QFSY  ++D+       +    G PVG+L+AC++SEAAYSAL QPIS+L  
Sbjct: 1016 RNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEA 1075

Query: 2156 SPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVST 1977
            SPLL LKNVLE G ++    +T SLFLS+ I +   G EY A+ +KN LER +FS+IVST
Sbjct: 1076 SPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVST 1135

Query: 1976 VMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPK 1797
            VMI F+ Q C  V +SPW+CHFH+ KE + ++ L V SII++L     S     K   P 
Sbjct: 1136 VMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRRESKVILPS 1195

Query: 1796 WHILSRGCYVVEPQK----------------------EYDVTFCITVAVEISNGSVVLME 1683
              I S+    VE ++                      E D   CITVAV   + + V ++
Sbjct: 1196 LKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCITVAVVEDSKNSVQLD 1255

Query: 1682 TVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKC 1503
            +VR  ++PFLL+  I+GFLE KKVDILW DLP  +KS+    GEL+++V +S   +    
Sbjct: 1256 SVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDNGTF 1315

Query: 1502 WNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEH 1323
            W  L+N C RIM LIDW RSHPD+++     +GID  W+++   L  A SD  KSILP+H
Sbjct: 1316 WGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKH 1375

Query: 1322 MLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLL 1143
            + LVA+ LS +GEFVGLN+KG+ +QR  AS+SSPF+QACFSNPG+SF+KAAK+G+ D+L 
Sbjct: 1376 LRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQ 1435

Query: 1142 GTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSL 963
            G LDA+AWG  +PMGTGGQFDIIYS K  E+   V+VY +   S    + + ++ +P S 
Sbjct: 1436 GNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSF--NQMDQEINIPQSR 1493

Query: 962  KNLCNKWSAQSLPLN--HASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSID 789
            K    K S+     N  +  +     K    SV++   + ND+  ++   R IL+KY ID
Sbjct: 1494 KYSSGKCSSDFRSKNGGYTPKEPKQWK----SVLRNFMTANDIQRLTFDARVILNKYQID 1549

Query: 788  HFLNENEKSILTEALQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSY 609
              L+E +K  + + L FHP+R++K GSG QNIK+G HP+   SRCF +IRKDG++ DFSY
Sbjct: 1550 ETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSY 1609

Query: 608  RKCVMGA 588
            RKC++GA
Sbjct: 1610 RKCILGA 1616


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  521 bits (1341), Expect = e-145
 Identities = 275/596 (46%), Positives = 384/596 (64%), Gaps = 15/596 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVV-----QDTVSDGFGAPVGSLAACSISEAAYSALDQPISI 2166
            RN YGNQL+QFSY  ++D+       +DT+    G PVG+L+AC++SEAAYSAL QPIS+
Sbjct: 856  RNLYGNQLIQFSYDAEEDSSCDSHFREDTIG---GEPVGTLSACAVSEAAYSALSQPISL 912

Query: 2165 LVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDI 1986
            L  SPLL LK VLE G ++    +T SLFLS+ I +   G EY A+ +KN LER++FSDI
Sbjct: 913  LEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDI 972

Query: 1985 VSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKAN 1806
            VSTVMI F+ Q+  +  +SPW+CHFH+ KE + ++ L V SII++L     S  +  K  
Sbjct: 973  VSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVT 1032

Query: 1805 PPKWHILSRGCYV---------VEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFL 1653
             P   I ++ C V             KE D   CITV +  +  + V ++ VR++++PFL
Sbjct: 1033 LPNLKISTKKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPFL 1092

Query: 1652 LRKVIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLR 1473
            LR  I+G  E KKVDILW DL   SKS+    GEL+++V +S   +    W  L+N C R
Sbjct: 1093 LRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHR 1152

Query: 1472 IMHLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSV 1293
            IM +IDW RSHPD+++     +GID  W++F+  L  A SD   SILP+H+ LVA+ LS 
Sbjct: 1153 IMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSA 1212

Query: 1292 TGEFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGR 1113
            +GEFVGLNSKG+ +QR+ AS+SSPF+QACFSNPG++F+KAAK+GV D+L GTLD +AWG 
Sbjct: 1213 SGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWGN 1272

Query: 1112 QVPMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSL-KNLCNKWSA 936
             + MGT GQFD++YS K  E+A  V+VYD+   S    ++ +     ++   + CN    
Sbjct: 1273 CLSMGTSGQFDVMYSEKVQELAKSVDVYDLLETSFDQLDQEINTSQSNNYSSDKCNS-QF 1331

Query: 935  QSLPLNHASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSIL 756
            +     +A +     K    SV++   + ND+  ++ + R IL+KY ID  L+E +K  +
Sbjct: 1332 RHKKGRYAPKEPKQWK----SVIRNFMTANDIQKLTSASRFILNKYPIDQILSERDKLTI 1387

Query: 755  TEALQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
             + L FHP+RN+KLGSG Q+IK+G HPK   SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1388 MKVLHFHPRRNEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGA 1443


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  518 bits (1333), Expect = e-144
 Identities = 276/597 (46%), Positives = 384/597 (64%), Gaps = 16/597 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVV-----QDTVSDGFGAPVGSLAACSISEAAYSALDQPISI 2166
            RN YGNQL+QFSY  ++D+       +DT+    G PVG+L+AC++SEAAYSAL QPIS+
Sbjct: 856  RNLYGNQLIQFSYDAEEDSSCDSHFREDTIG---GEPVGTLSACAVSEAAYSALSQPISL 912

Query: 2165 LVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDI 1986
            L  SPLL LK VLE G ++    +T SLFLS+ I +   G EY A+ +KN LER++FSDI
Sbjct: 913  LEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDI 972

Query: 1985 VSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKAN 1806
            VSTVMI F+ Q+  +  +SPW+CHFH+ KE + ++ L V SII++L     S  +  K  
Sbjct: 973  VSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVT 1032

Query: 1805 PPKWHI-LSRGCYV---------VEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPF 1656
             P   I  +R C V             KE D   CITV +  +  + V ++ VR++++PF
Sbjct: 1033 LPNLKISTNRKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPF 1092

Query: 1655 LLRKVIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCL 1476
            LLR  I+G  E KKVDILW DL   SKS+    GEL+++V +S   +    W  L+N C 
Sbjct: 1093 LLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCH 1152

Query: 1475 RIMHLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLS 1296
            RIM +IDW RSHPD+++     +GID  W++F+  L  A SD   SILP+H+ LVA+ LS
Sbjct: 1153 RIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLS 1212

Query: 1295 VTGEFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWG 1116
             +GEFVGLNSKG+ +QR+ AS+SSPF+QACFSNPG++F+KAAK+GV D+L GTLD +AWG
Sbjct: 1213 ASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWG 1272

Query: 1115 RQVPMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSL-KNLCNKWS 939
              + MGT GQFD++YS K  E+A  V+VYD+   S    ++ +     ++   + CN   
Sbjct: 1273 NCLSMGTSGQFDVMYSEKVQELAKSVDVYDLLETSFDQLDQEINTSQSNNYSSDKCNS-Q 1331

Query: 938  AQSLPLNHASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSI 759
             +     +A +     K    SV++   + ND+  ++ + R IL+KY ID  L+E +K  
Sbjct: 1332 FRHKKGRYAPKEPKQWK----SVIRNFMTANDIQKLTSASRFILNKYPIDQILSERDKLT 1387

Query: 758  LTEALQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            + + L FHP+RN+KLGSG Q+IK+G HPK   SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1388 IMKVLHFHPRRNEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGA 1444


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score =  513 bits (1321), Expect = e-142
 Identities = 278/593 (46%), Positives = 392/593 (66%), Gaps = 12/593 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSD----------GFGAPVGSLAACSISEAAYSALD 2181
            RNAYGNQL+QFSY + +     D+ ++          G   PVG+L+AC+ISEAAYSALD
Sbjct: 844  RNAYGNQLIQFSYDIDEGISTADSTTNSSYAKSVINCGGSQPVGALSACAISEAAYSALD 903

Query: 2180 QPISILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERV 2001
            QP+S+L  SPLL LKN+LE G KR+SA +T SLFLS  ++R  +G EYGA+ +KN LE +
Sbjct: 904  QPVSLLEASPLLNLKNILECGSKRSSAKQTMSLFLSDKLDRHRHGFEYGALEVKNHLEGL 963

Query: 2000 LFSDIVSTVMIEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEE 1821
             FSDIVSTVMI FS Q+   + FSPW+ HFH+ KE +R++ L VQSIIEAL   C S+  
Sbjct: 964  NFSDIVSTVMIMFSSQSGSKMRFSPWVSHFHISKEIVRRRRLNVQSIIEALYAMCNSAGA 1023

Query: 1820 IQKANPPKWHILSRGCYVVEPQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRK 1644
              K       I+ R C       +   TFCI+V + E  N S   ++  R LV+PFLL+ 
Sbjct: 1024 DLKIM-----IIGRECDCCSTPND---TFCISVTLTEKYNNSSKELDKTRVLVIPFLLKT 1075

Query: 1643 VIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLS-ESCEIRKCWNLLLNKCLRIM 1467
            V++GFLE KKVDILW D P +S       GEL ++V +S ++ +    WN+L++ C+ +M
Sbjct: 1076 VVKGFLEIKKVDILWIDRPGSS-------GELCLRVSMSGKTRKGTTLWNMLMDDCIPVM 1128

Query: 1466 HLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTG 1287
             +IDW RSHPD+++DI   YGIDV  ++F+ +L+ A  D+ K+ILP+H+LLVADCLS TG
Sbjct: 1129 DMIDWSRSHPDNVHDICTAYGIDVGQKHFLNKLESATKDVGKTILPQHLLLVADCLSATG 1188

Query: 1286 EFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQV 1107
            EFV LN+KGI QQ + AS+ +PFMQACFS PG   +KAAK GV D+L G+LDA+ WG   
Sbjct: 1189 EFVSLNAKGIGQQLEHASVIAPFMQACFSTPGPCLVKAAKVGVVDNLQGSLDALTWGNTP 1248

Query: 1106 PMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSL 927
             +G+GGQFDII+S KG   + P+ VYD+ S+ +I+  +N   ++  +  +L +K+ A ++
Sbjct: 1249 SLGSGGQFDIIFS-KGPVSSKPIKVYDLLSSQIITNPQN-GFEMSDAPIHLSDKFVAPNM 1306

Query: 926  PLNHASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEA 747
              N   R     + I+ SV++E  +  D+  +S +L+ IL KY ++  +N+ +K +L   
Sbjct: 1307 YKNGYLR---KWESITKSVLRENLTIQDIDRLSQALKNILQKYDVNERINDMDKQVLMMV 1363

Query: 746  LQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
            L+FHP  + K+G G++ +K+G HP H+  RCFML+R DGTI D SY KC+ GA
Sbjct: 1364 LRFHPHGDRKIGLGIKEVKVGHHPDHENVRCFMLVRTDGTIEDVSYHKCICGA 1416


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  504 bits (1298), Expect = e-140
 Identities = 263/592 (44%), Positives = 389/592 (65%), Gaps = 9/592 (1%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSP 2151
            RN+YG+Q+VQF YG  D + V   V  G G PVGSLAAC+ISEAAYSALDQP+S L  SP
Sbjct: 529  RNSYGSQIVQFDYGTGDMSAVNSDVLMG-GHPVGSLAACAISEAAYSALDQPVSALEPSP 587

Query: 2150 LLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVM 1971
            L+ LK VL+ G K  +  ++ SLFLS+ + +W+ G E+GA+ +K+ +E +LFS++VS V 
Sbjct: 588  LIALKKVLDCGVKNNTGGKSASLFLSRRLGKWVNGFEFGALEVKDHMESLLFSEVVSEVT 647

Query: 1970 IEFSQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWH 1791
            I FS +     + SPW+C+F + KE   K+ L ++S++  L  NC ++ +  K   P   
Sbjct: 648  ISFSTER--RTNISPWVCNFCINKEVFMKRNLKLESVVHTLRANCNATPKKMKLKLPNLL 705

Query: 1790 ILSRGCYVVEPQKEYDVTFCITVAV---EISN---GSVV---LMETVRDLVVPFLLRKVI 1638
            I ++ C   +  ++     CI+VAV   E+SN   GS+    +++ +R++V+P LLR V+
Sbjct: 706  IENKDCSEADFHEDSS-RICISVAVSQNELSNLHFGSLKEYEILDYLRNMVIPVLLRTVV 764

Query: 1637 RGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLI 1458
            +GF EFKKVDILW D    S+  +   GE +V+V++SE+CE  + WN+L+ K LRI  LI
Sbjct: 765  KGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVRVFMSENCERARFWNILVEKSLRIRSLI 824

Query: 1457 DWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFV 1278
            DW RSHPDD++D    +GID AW  F+  L  A+S+  K+ILPEH++  A+CLS+TGEFV
Sbjct: 825  DWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCLSMTGEFV 884

Query: 1277 GLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMG 1098
             LN+KG+ QQR  A+I+SPF+QACFSNP   FIKAAK G  D+L G++D++AWG+  P+G
Sbjct: 885  SLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAWGQTPPIG 944

Query: 1097 TGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN 918
            TGGQFDIIYSGKGHE + P +VY + ++ +   + + K+K+P    +      +Q+L  N
Sbjct: 945  TGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFAKPSEKIKLPVQFTS--GNDQSQNLKTN 1002

Query: 917  HASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQF 738
               R    +K +  +        +++  +S++L+ +LH+Y+ D  L   +K++   ALQ+
Sbjct: 1003 GRKRFLAGMKSLRSAE-------DEIREVSLALKRMLHEYASDCQLRGEDKTLALRALQY 1055

Query: 737  HPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGAAR 582
            HP+  +K G+G   IK+GRHP H++SRCF +++ DGT  D SYRK + G AR
Sbjct: 1056 HPRWEEKTGAGTVEIKVGRHPDHKESRCFFVVKTDGTEEDISYRKSIQGLAR 1107


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  501 bits (1291), Expect = e-139
 Identities = 265/596 (44%), Positives = 377/596 (63%), Gaps = 15/596 (2%)
 Frame = -2

Query: 2330 RNAYGNQLVQFSYGVKDDNVVQDTVSDGF------GAPVGSLAACSISEAAYSALDQPIS 2169
            RN YGNQL+QFSY +++D+    + + GF      G  VG+++AC+ISEAAYSAL QP+S
Sbjct: 850  RNLYGNQLIQFSYDIEEDS----SCNKGFQQYALGGESVGAISACAISEAAYSALGQPVS 905

Query: 2168 ILVTSPLLCLKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSD 1989
            +L TSPLL LKNVLE G ++ +  +T SLFLS+ + +  +G EY A+ +KN LER+LFS+
Sbjct: 906  LLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSN 965

Query: 1988 IVSTVMIEFS-QQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQK 1812
            IVS VMI F+   +     +SPW+CHFH+ KE + ++ L V SII++L    YS  +  K
Sbjct: 966  IVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSK 1025

Query: 1811 ANPPKWHILSRGCYVVEPQKEYDVTF--------CITVAVEISNGSVVLMETVRDLVVPF 1656
                   I SR C      KE + T         CI V +  ++ + + +++VRDLV+PF
Sbjct: 1026 VCFTNLKISSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPF 1085

Query: 1655 LLRKVIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCL 1476
            LL   I+GFL+ KKVDILWN+    + S   + GEL+++V LS      + W +LL  C 
Sbjct: 1086 LLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCH 1145

Query: 1475 RIMHLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLS 1296
            +IMH+IDW RSH D++      YGID  W+YF   L  A SD  KSILP+H+ LVA+ LS
Sbjct: 1146 KIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLS 1205

Query: 1295 VTGEFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWG 1116
             +GEFVGLN+KG+  QR  AS+SSPF+QACF+NPG+ FIKAAK+G  D+L G+LD +AWG
Sbjct: 1206 CSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWG 1265

Query: 1115 RQVPMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSA 936
              + MGT G FD+IYS KGH+VA  V+VY++   S       +   +     + C     
Sbjct: 1266 NCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGS--- 1322

Query: 935  QSLPLNHASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSIL 756
                  H +   +       ++++   + ND+  ++ + R IL+KYSID  L+E+++S +
Sbjct: 1323 ---EFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTM 1379

Query: 755  TEALQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 588
               L FHP +++K G G Q+IK+G HPK++ SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1380 LRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGA 1435