BLASTX nr result

ID: Sinomenium22_contig00033675 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00033675
         (549 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB97147.1| hypothetical protein L484_008637 [Morus notabilis]      42   1e-06
ref|XP_002305013.1| hypothetical protein POPTR_0004s03860g [Popu...    43   3e-06
ref|XP_002317226.1| hydroxyproline-rich glycoprotein [Populus tr...    40   5e-06

>gb|EXB97147.1| hypothetical protein L484_008637 [Morus notabilis]
          Length = 669

 Score = 42.4 bits (98), Expect(2) = 1e-06
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = -1

Query: 507 GLTRDYSCEWGENFLLVVELQK-VLTLRDIFDLPPCNGN*YIKEV 376
           G+ +   C W  + +L++EL+K +LT RD  DLPPC+G+  I E+
Sbjct: 3   GIAKGNLCGWTGSLILMIELRKKILTFRDTIDLPPCDGSSPIHEL 47



 Score = 35.8 bits (81), Expect(2) = 1e-06
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -3

Query: 256 SVSIMQLLLGTVEDLHKLYPKIVPKTR 176
           S  I +L+ GTVEDLH LYP IVP  R
Sbjct: 41  SSPIHELVKGTVEDLHNLYPNIVPYDR 67


>ref|XP_002305013.1| hypothetical protein POPTR_0004s03860g [Populus trichocarpa]
           gi|222847977|gb|EEE85524.1| hypothetical protein
           POPTR_0004s03860g [Populus trichocarpa]
          Length = 788

 Score = 42.7 bits (99), Expect(2) = 3e-06
 Identities = 16/30 (53%), Positives = 26/30 (86%)
 Frame = -3

Query: 256 SVSIMQLLLGTVEDLHKLYPKIVPKTRLYQ 167
           S+SI +L++GT+ DLHK YP+I+P ++LY+
Sbjct: 67  SLSINELVMGTMRDLHKFYPEIIPSSQLYE 96



 Score = 33.9 bits (76), Expect(2) = 3e-06
 Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -1

Query: 471 NFLLVVELQK-VLTLRDIFDLPPCNGN*YIKEV 376
           NF+L++EL+K ++T RDI DLPP + +  I E+
Sbjct: 41  NFILMMELRKKIITFRDIIDLPPFDASLSINEL 73


>ref|XP_002317226.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]
           gi|222860291|gb|EEE97838.1| hydroxyproline-rich
           glycoprotein [Populus trichocarpa]
          Length = 792

 Score = 39.7 bits (91), Expect(2) = 5e-06
 Identities = 15/28 (53%), Positives = 25/28 (89%)
 Frame = -3

Query: 256 SVSIMQLLLGTVEDLHKLYPKIVPKTRL 173
           S+SI +L++GT++DLHK YP+I+P ++L
Sbjct: 38  SLSINELVMGTMKDLHKFYPEIIPSSQL 65



 Score = 36.2 bits (82), Expect(2) = 5e-06
 Identities = 17/33 (51%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = -1

Query: 471 NFLLVVELQK-VLTLRDIFDLPPCNGN*YIKEV 376
           NF+L++EL+K ++T RDI DLPP +G+  I E+
Sbjct: 12  NFILMMELRKKIITFRDIIDLPPFDGSLSINEL 44


Top