BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00032307
         (1493 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17549.3| unnamed protein product [Vitis vinifera]              423   e-115
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       421   e-115
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   414   e-113
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...   412   e-112
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   407   e-111
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   395   e-107
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   395   e-107
ref|XP_007046993.1| Transcription regulators,zinc ion binding, p...   394   e-107
ref|XP_007046992.1| Transcription regulators,zinc ion binding, p...   394   e-107
ref|XP_007046991.1| SIN-like family protein, putative isoform 1 ...   394   e-107
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr...   376   e-101
ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citr...   376   e-101
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor...   358   3e-96
ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|1017...   358   3e-96
ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutr...   358   4e-96
ref|XP_006279575.1| hypothetical protein CARUB_v10025904mg [Caps...   356   2e-95
ref|XP_007201935.1| hypothetical protein PRUPE_ppa002228mg [Prun...   353   8e-95
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   348   3e-93
ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arab...   348   4e-93
ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III s...   338   3e-90

>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  423 bits (1087), Expect = e-115
 Identities = 255/525 (48%), Positives = 318/525 (60%), Gaps = 28/525 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQ-DPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDV 1315
            VVREIDVF  PP  D N+++ VLQYPLRP WRPY+L ERC EVR+KP S +VEVDLS+DV
Sbjct: 102  VVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDV 161

Query: 1314 DN-NYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHL 1141
            D+ NYD       R+ KQTL TS KPP  T Y VG+L GNKLHLNPIHAVVQLRPSME+L
Sbjct: 162  DSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYL 221

Query: 1140 K--------------GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNTD-VESWVPLEYH 1006
                                          G  KKQ K +    EQNTD  ESWVPL+YH
Sbjct: 222  SSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYH 281

Query: 1005 GMQSSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVS-TLEGNKMGXXXXXXXXXLPL 829
              +S  ++RY +KMV++D+S IQF M+ Y+YVNSLCP   + + N+           +PL
Sbjct: 282  SSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPL 341

Query: 828  EERIKTLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL--KLKG 655
            EER KTL+ EGP V++F A KHFAPD+S +DVL VL  HA LVQGLWVPKS+LL    +G
Sbjct: 342  EERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQG 401

Query: 654  IDAAIRDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTL 475
            +    RDY+LLLFS+  +I+  Q++      +     LS  A+ RP   DWKFK   D  
Sbjct: 402  VAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVS 461

Query: 474  FLKTYPHIVRNQEQGWMNREKRIM------GAVGREVGNSLKSTMTNLDGTPGKQD-LKR 316
            F+K +P IVR Q + W + EK+I       G  G    NS K ++ N  GT  K D   R
Sbjct: 462  FMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATR 521

Query: 315  GVNGKPSSGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSR 136
              NG P   +  M+ ETREAL KAL E+F   KVCS Q+I Q+LRD AV+KST+PK   R
Sbjct: 522  ATNGTPVRRT-AMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPR 580

Query: 135  XXXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLSENQTLNPLR 1
                          EL +I++++AT +HGVYV K SE+   NPLR
Sbjct: 581  TFVAAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLR 625


>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  421 bits (1083), Expect = e-115
 Identities = 252/514 (49%), Positives = 314/514 (61%), Gaps = 26/514 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            +VREIDV+L P  DPN++L VLQYPLRP WRPY+LD+RC EVR+K KS +VEVDL++DVD
Sbjct: 107  IVREIDVYLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVD 166

Query: 1311 N-NYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
            + NYD+     + +TKQTLTSS KPP+   YAVG+L GNKLHLNPIHAVVQLRPSM+H K
Sbjct: 167  SKNYDSDADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYK 226

Query: 1137 ----------GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNTDV-ESWVPLEYHGMQSS 991
                                    TG  KKQGK     IEQN D  E W+PL YHG +S 
Sbjct: 227  PESSKRRTTASSNLEDNTKGEEVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGARSD 286

Query: 990  VASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKT 811
            ++  Y  KMV  D S IQFSMN +DYVN+LCP ++ E N            LPLEER +T
Sbjct: 287  ISMSYVRKMVEHDSSHIQFSMN-HDYVNTLCPGTSNENNG-SNGPSRVLLSLPLEERFRT 344

Query: 810  LVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL--KLKGIDAAIR 637
             + +GP +++F A KH APD S +D+LAVL  HA LVQGLW+PKS+LL  K +GIDA  R
Sbjct: 345  WLLQGPPIHRFDALKHLAPDASVEDILAVLSQHAQLVQGLWIPKSSLLYGKDQGIDALAR 404

Query: 636  DYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYP 457
            DYVLLLFSR+ +I++ QL   ++  +    VL   A  R   NDWKFK   D  F+K  P
Sbjct: 405  DYVLLLFSRTPIINNSQLPQQQKLNRAMRDVLDTVAFERVSLNDWKFKEPPDMTFIKLNP 464

Query: 456  HIVRNQEQGWMNREK----RIMGAVGR-EVGNSLKSTMTNLDGTP------GKQDLKRGV 310
             IVR QEQ W   EK    +I G   R    NS +   TN   T           L  GV
Sbjct: 465  KIVREQEQTWERLEKLITEKIFGDKNRPATKNSSRPLTTNNPATSKSLSKHASNSLNAGV 524

Query: 309  NGKPSSGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXX 130
              +P      M++ETREAL KAL ++F + KVC  Q+ Q+ LR+ AV++S+ PKG +R  
Sbjct: 525  PRRP------MSEETREALPKALQKLFQSHKVCFQQICQR-LREMAVSESSRPKGFAREA 577

Query: 129  XXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLS 28
                      P ELQ+I++Q A NIHGVYV K S
Sbjct: 578  IAAAHGVEAPPEELQAIISQVAINIHGVYVLKSS 611


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  414 bits (1063), Expect = e-113
 Identities = 245/510 (48%), Positives = 313/510 (61%), Gaps = 13/510 (2%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQ-DPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDV 1315
            VVREIDVF  PP  D N+++ VLQYPLRP WRPY+L ERC EVR+KP S +VEVDLS+DV
Sbjct: 102  VVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDV 161

Query: 1314 DN-NYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHL 1141
            D+ NYD       R+ KQTL++S KPP  T Y VG+L GNKLHLNPIHAVVQLRPSME+L
Sbjct: 162  DSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYL 221

Query: 1140 KGXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNTDVESWVPLEYHGMQSSVASRYREKMV 961
                               K +    + S+  +   +SWVPL+YH  +S  ++RY +KMV
Sbjct: 222  SSGGAKRKNNVTGDTNSAVKLEVSNEEESVG-SLKKQSWVPLKYHSSESDFSARYLQKMV 280

Query: 960  SKDDSLIQFSMNLYDYVNSLCPVSTL-EGNKMGXXXXXXXXXLPLEERIKTLVSEGPQVN 784
            ++D+S IQF M+ Y+YVNSLCP     + N+           +PLEER KTL+ EGP V+
Sbjct: 281  AEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEGPPVH 340

Query: 783  QFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKL--KGIDAAIRDYVLLLFSR 610
            +F A KHFAPD+S +DVL VL  HA LVQGLWVPKS+LL    +G+    RDY+LLLFS+
Sbjct: 341  RFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSK 400

Query: 609  STVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPHIVRNQEQG 430
              +I+  Q++      +     LS  A+ RP   DWKFK   D  F+K +P IVR Q + 
Sbjct: 401  GPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRV 460

Query: 429  WMNREKRIM------GAVGREVGNSLKSTMTNLDGTPGKQD-LKRGVNGKPSSGSMTMTD 271
            W + EK+I       G  G    NS K ++ N  GT  K D   R  NG P   +  M+ 
Sbjct: 461  WESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRRT-AMSA 519

Query: 270  ETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXXXAPHE 91
            ETREAL KAL E+F   KVCS Q+I Q+LRD AV+KST+PK   R              E
Sbjct: 520  ETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGADAPQEE 579

Query: 90   LQSIVNQFATNIHGVYVAKLSENQTLNPLR 1
            L +I++++AT +HGVYV K SE+   NPLR
Sbjct: 580  LHAIISKYATTVHGVYVWKTSEHSEHNPLR 609


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
            gi|550334731|gb|EEE90658.2| hypothetical protein
            POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score =  412 bits (1060), Expect = e-112
 Identities = 241/513 (46%), Positives = 310/513 (60%), Gaps = 17/513 (3%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDV+  P  DPN+QL V+QYPLRP WRPY+LDERC+EVR+KP+S +VEVDLS+D  
Sbjct: 111  VVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSIDDT 170

Query: 1311 NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHL-- 1141
             NYD  +A  L + KQTL+SS  PP AT YAVG+L GNKLHLNPIHAVVQLRPSM++L  
Sbjct: 171  KNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLSS 230

Query: 1140 -----KGXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNTDVE-SWVPLEYHGMQSSVASR 979
                 K               G  KKQ K + +  EQ  DVE SW+PL+YHG +S ++SR
Sbjct: 231  GNSKGKKNATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSKSDLSSR 290

Query: 978  YREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSE 799
            Y + MV+ + S I+F+MN YDY++SLCP  +    K+          LPLEERIK L  E
Sbjct: 291  YLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEERIKRLFLE 350

Query: 798  GPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL-----KLKGIDAAIRD 634
            GP +++F A +H  P+DS +D+L VLQ +  LVQGLWVPK++LL       + +  A RD
Sbjct: 351  GPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTEKVKLAARD 410

Query: 633  YVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPH 454
            Y+LLLFS+S V++  +L    + + +    L+ FA+ RP   DWKFK   DTLF++ YP 
Sbjct: 411  YILLLFSKSLVVTPSELNVPMKPL-ILKSFLNIFAVERPSFKDWKFKENVDTLFVELYPD 469

Query: 453  IVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPGKQDLKRGVNGKPSSGSMTMT 274
            IVR QEQ W    K I  A  R    + KS   N+   P K                TMT
Sbjct: 470  IVRKQEQAWEVMGKNISAAFDR----AGKSVSKNVITKPKK----------------TMT 509

Query: 273  DETREALSKALMEIFSNQKVC--SLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXXXA 100
            DETREAL KAL ++    KVC    Q+I Q LR  A+++ST PK   R            
Sbjct: 510  DETREALRKALPKVLQTHKVCRYGFQMICQGLRQLAISQSTLPKADPRIAVAAASGAEAP 569

Query: 99   PHELQSIVNQFATNIHGVYVAKLS-ENQTLNPL 4
            P ELQ ++++ ATNIHG YV K S E+   +PL
Sbjct: 570  PEELQEVISEVATNIHGFYVLKSSPEHPDFDPL 602


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  407 bits (1045), Expect = e-111
 Identities = 234/502 (46%), Positives = 303/502 (60%), Gaps = 14/502 (2%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            +VREIDVF  P  D  +QL V+QYPLRP WRPY+LDERC EVR+KP+S +VEVDL++D  
Sbjct: 117  IVREIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTIDDS 176

Query: 1311 NNYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLKG 1135
            +N+D + A      KQTL TS  PP  T YAVG+L GNKLHLNPIHAVVQLRPS+EH+  
Sbjct: 177  SNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVNS 236

Query: 1134 XXXXXXXXXXXXXTGP--SKKQGKAIKTSIEQNTDVESWVPLEYHGMQSSVASRYREKMV 961
                                 +GK I +S +Q      W+ L+YHG +S  +SRY EKM+
Sbjct: 237  NDSKRKNSATLNPEVKLEDSNEGKPIGSSKKQ-----CWISLKYHGSKSDFSSRYLEKMI 291

Query: 960  SKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSEGPQVNQ 781
            +++ S ++F+M  YDY++SLCPV++ E  K           LPL ER+K L+ EGP V +
Sbjct: 292  AQESSPMEFTMTPYDYMSSLCPVASNEKTKSKGPPRRFLLSLPLAERLKKLILEGPPVQR 351

Query: 780  FKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL-KLKGIDAAIRDYVLLLFSRST 604
            F   KHFAPDDS +DVL VLQ +  LVQGLW PKS+LL         IRDYVLLLFS++ 
Sbjct: 352  FSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSLLFPDANSKQGIRDYVLLLFSKNL 411

Query: 603  VISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPHIVRNQEQGWM 424
            VI+S Q+    +  +     L+ FA+ RP   DWKFK   DT F+K YP IV+ QE+ W 
Sbjct: 412  VINSSQVNFPVKIKEEIKSFLNLFAVERPSFKDWKFKEHTDTTFIKLYPDIVKKQEEAWD 471

Query: 423  NREKRIMGAVGREVGNSLK----------STMTNLDGTPGKQDLKRGVNGKPSSGSMTMT 274
            N EKR+     R    S+K          +T+ +LD    ++ + +  +G       T+T
Sbjct: 472  NTEKRLSKVFDRSGKASMKNAIPKPPMVHNTVKHLD---SEKSMPKIASGMRRLTKTTIT 528

Query: 273  DETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXXXAPH 94
             ETREAL KAL ++F + KVCS Q+I Q LRD AV++ST PK   R            P 
Sbjct: 529  VETREALLKALPKVFQSHKVCSFQLICQGLRDLAVSQSTLPKADPRIAVAAASGADAPPE 588

Query: 93   ELQSIVNQFATNIHGVYVAKLS 28
            ELQ I++Q ATNIHG YV K S
Sbjct: 589  ELQEIISQVATNIHGFYVLKSS 610


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  395 bits (1016), Expect = e-107
 Identities = 239/526 (45%), Positives = 307/526 (58%), Gaps = 29/526 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDV   P  D NS+L VLQYPLRPRWRPY+ + RC EVR+KP + +VEVDL++D++
Sbjct: 120  VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 179

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NNYD       ++ KQTLTSS +PPLATSYAVGLL GNKLHLNP+HAVVQLRPS EHL 
Sbjct: 180  SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239

Query: 1137 GXXXXXXXXXXXXXT------------GPSKKQGKAIKTSIEQNT-DVESWVPLEYHGMQ 997
                                       G S+KQ K    S E  T D E W+PL+Y+G++
Sbjct: 240  SGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLE 299

Query: 996  SSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERI 817
            S +++R+ + MVS+  S +QFSM+ +DY++SLCP ++  GNK           L LEERI
Sbjct: 300  SDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERI 359

Query: 816  KTLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKST-LLKLKGIDAAI 640
            K L++EGP V +F A KH+APD   ++ +  LQ +A LVQGLWVPKS  L+   G     
Sbjct: 360  KKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCA 419

Query: 639  RDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTY 460
            RD+VL LFS++ V+SS Q+   +       H L+ F + RP   DWKFK   D LFL  +
Sbjct: 420  RDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNH 479

Query: 459  PHIVRNQEQGWMNREKRIMGAVGREVGNSLKST--MTNLDGTPG------KQDLKRGVNG 304
              I   QE+ W N EK      G     S+KS        G PG      KQ        
Sbjct: 480  VRIAEKQEELWNNVEK------GFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTT 533

Query: 303  KPSSGSM----TMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSR 136
            K S+  +     M+DETREAL KAL ++F N KVCS Q+I Q LRD AV++ST PK  +R
Sbjct: 534  KSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADAR 593

Query: 135  XXXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLS-ENQTLNPLR 1
                        P EL+ I++Q AT IHG+YV   S E+   +PLR
Sbjct: 594  MAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLR 639


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  395 bits (1014), Expect = e-107
 Identities = 239/526 (45%), Positives = 306/526 (58%), Gaps = 29/526 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDV   P  D NS+L VLQYPLRPRWRPY+ + RC EVR+KP + +VEVDL++D++
Sbjct: 120  VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 179

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NNYD       ++ KQTLTSS +PPLATSYAVGLL GNKLHLNP+HAVVQLRPS EHL 
Sbjct: 180  SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239

Query: 1137 GXXXXXXXXXXXXXT------------GPSKKQGKAIKTSIEQNT-DVESWVPLEYHGMQ 997
                                       G S+KQ K    S E  T D E W+PL+Y+G++
Sbjct: 240  SGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLE 299

Query: 996  SSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERI 817
            S +++R+ + MVS+  S +QFSM+ +DY++SLCP ++  GNK           L LEERI
Sbjct: 300  SDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERI 359

Query: 816  KTLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKST-LLKLKGIDAAI 640
            K L++EGP V +F A KH+APD   ++ +  LQ +A LVQGLWVPKS  L+   G     
Sbjct: 360  KKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCA 419

Query: 639  RDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTY 460
            RD+VL LFS++ V+SS Q+   +       H L+ F + RP   DWKFK   D LFL  +
Sbjct: 420  RDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNH 479

Query: 459  PHIVRNQEQGWMNREKRIMGAVGREVGNSLKST--MTNLDGTPG------KQDLKRGVNG 304
              I   QE+ W N EK      G     S+KS        G PG      KQ        
Sbjct: 480  VRIAEKQEELWNNVEK------GFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTT 533

Query: 303  KPSSGSM----TMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSR 136
            K S+  +     M+DETREAL KAL ++F N KVCS Q+I Q LRD AV++ST PK  +R
Sbjct: 534  KSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADAR 593

Query: 135  XXXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLS-ENQTLNPLR 1
                        P EL  I++Q AT IHG+YV   S E+   +PLR
Sbjct: 594  MAVAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLR 639


>ref|XP_007046993.1| Transcription regulators,zinc ion binding, putative isoform 3
            [Theobroma cacao] gi|508699254|gb|EOX91150.1|
            Transcription regulators,zinc ion binding, putative
            isoform 3 [Theobroma cacao]
          Length = 736

 Score =  394 bits (1013), Expect = e-107
 Identities = 239/521 (45%), Positives = 313/521 (60%), Gaps = 24/521 (4%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D N+QL VLQYPLRP WRPY+LDERC EVR+KP S +VE+DL++DVD
Sbjct: 121  VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 180

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NNYD+  A  L++TKQTL+SS  PP  T YAVG+L G+KLHLNPIHAVVQLRPSM HLK
Sbjct: 181  SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 240

Query: 1137 --------------GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEYHG 1003
                                         G S KQ K +++S EQ   D E WVPL+YH 
Sbjct: 241  PSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHS 300

Query: 1002 MQSSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEE 823
             ++  +++Y ++M++++   IQF+M+ YDYV+SLCP ++   NK           +PLEE
Sbjct: 301  SKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGAS-NNNKAQGPSRRLLLSIPLEE 359

Query: 822  RIKTLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKG-IDA 646
            R+K L+SEGP  ++F A KHFAPD S +D+  VLQ HA LVQGLWVPKS+LL  +    +
Sbjct: 360  RLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFPEDPYKS 419

Query: 645  AIRDYVLLLFSRSTVISSKQLEG-SERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFL 469
              RDYVLLLFS++ +IS  Q+   S  R +     L   AI RP   DWK K   D  F 
Sbjct: 420  LARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKENADEGFK 479

Query: 468  KTYPHIVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPGK-QDLKRGVN--GKP 298
            K YP IV+NQEQ W   E  ++  + R        T       P K  +  +GV      
Sbjct: 480  KLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAMNSDKGVRRVAPA 539

Query: 297  SSGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXX 118
                 TM+DETREA+ KAL ++F   KVCSLQ+I++ LRD A+++ST PK  +R      
Sbjct: 540  VQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKAA 599

Query: 117  XXXXXAPHELQSIVNQFATNIH-GVYVAKLS-ENQTLNPLR 1
                   HELQ +V++ A  +H G++V + S E+   +PLR
Sbjct: 600  YGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLR 640


>ref|XP_007046992.1| Transcription regulators,zinc ion binding, putative isoform 2
            [Theobroma cacao] gi|508699253|gb|EOX91149.1|
            Transcription regulators,zinc ion binding, putative
            isoform 2 [Theobroma cacao]
          Length = 588

 Score =  394 bits (1013), Expect = e-107
 Identities = 239/521 (45%), Positives = 313/521 (60%), Gaps = 24/521 (4%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D N+QL VLQYPLRP WRPY+LDERC EVR+KP S +VE+DL++DVD
Sbjct: 24   VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 83

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NNYD+  A  L++TKQTL+SS  PP  T YAVG+L G+KLHLNPIHAVVQLRPSM HLK
Sbjct: 84   SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 143

Query: 1137 --------------GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEYHG 1003
                                         G S KQ K +++S EQ   D E WVPL+YH 
Sbjct: 144  PSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHS 203

Query: 1002 MQSSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEE 823
             ++  +++Y ++M++++   IQF+M+ YDYV+SLCP ++   NK           +PLEE
Sbjct: 204  SKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGAS-NNNKAQGPSRRLLLSIPLEE 262

Query: 822  RIKTLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKG-IDA 646
            R+K L+SEGP  ++F A KHFAPD S +D+  VLQ HA LVQGLWVPKS+LL  +    +
Sbjct: 263  RLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFPEDPYKS 322

Query: 645  AIRDYVLLLFSRSTVISSKQLEG-SERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFL 469
              RDYVLLLFS++ +IS  Q+   S  R +     L   AI RP   DWK K   D  F 
Sbjct: 323  LARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKENADEGFK 382

Query: 468  KTYPHIVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPGK-QDLKRGVN--GKP 298
            K YP IV+NQEQ W   E  ++  + R        T       P K  +  +GV      
Sbjct: 383  KLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAMNSDKGVRRVAPA 442

Query: 297  SSGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXX 118
                 TM+DETREA+ KAL ++F   KVCSLQ+I++ LRD A+++ST PK  +R      
Sbjct: 443  VQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKAA 502

Query: 117  XXXXXAPHELQSIVNQFATNIH-GVYVAKLS-ENQTLNPLR 1
                   HELQ +V++ A  +H G++V + S E+   +PLR
Sbjct: 503  YGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLR 543


>ref|XP_007046991.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
            gi|508699252|gb|EOX91148.1| SIN-like family protein,
            putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  394 bits (1013), Expect = e-107
 Identities = 239/521 (45%), Positives = 313/521 (60%), Gaps = 24/521 (4%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D N+QL VLQYPLRP WRPY+LDERC EVR+KP S +VE+DL++DVD
Sbjct: 121  VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 180

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NNYD+  A  L++TKQTL+SS  PP  T YAVG+L G+KLHLNPIHAVVQLRPSM HLK
Sbjct: 181  SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 240

Query: 1137 --------------GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEYHG 1003
                                         G S KQ K +++S EQ   D E WVPL+YH 
Sbjct: 241  PSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHS 300

Query: 1002 MQSSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEE 823
             ++  +++Y ++M++++   IQF+M+ YDYV+SLCP ++   NK           +PLEE
Sbjct: 301  SKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGAS-NNNKAQGPSRRLLLSIPLEE 359

Query: 822  RIKTLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKG-IDA 646
            R+K L+SEGP  ++F A KHFAPD S +D+  VLQ HA LVQGLWVPKS+LL  +    +
Sbjct: 360  RLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFPEDPYKS 419

Query: 645  AIRDYVLLLFSRSTVISSKQLEG-SERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFL 469
              RDYVLLLFS++ +IS  Q+   S  R +     L   AI RP   DWK K   D  F 
Sbjct: 420  LARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKENADEGFK 479

Query: 468  KTYPHIVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPGK-QDLKRGVN--GKP 298
            K YP IV+NQEQ W   E  ++  + R        T       P K  +  +GV      
Sbjct: 480  KLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAMNSDKGVRRVAPA 539

Query: 297  SSGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXX 118
                 TM+DETREA+ KAL ++F   KVCSLQ+I++ LRD A+++ST PK  +R      
Sbjct: 540  VQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKAA 599

Query: 117  XXXXXAPHELQSIVNQFATNIH-GVYVAKLS-ENQTLNPLR 1
                   HELQ +V++ A  +H G++V + S E+   +PLR
Sbjct: 600  YGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLR 640


>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC5-like [Citrus sinensis]
            gi|557527707|gb|ESR38957.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 690

 Score =  376 bits (966), Expect = e-101
 Identities = 226/524 (43%), Positives = 311/524 (59%), Gaps = 27/524 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            +VREIDVF  P  D +S+L V+QYPLRP WRPY+LDERC EVR+KP + +VE+DLS+DVD
Sbjct: 113  IVREIDVFFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMDLSIDVD 172

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NN+D+  A  L + KQTL+++  PP AT YA+G+L GNKLHLNPIHAVVQLR SM  LK
Sbjct: 173  SNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRTSMGFLK 232

Query: 1137 GXXXXXXXXXXXXXT------------GPSKKQGKAIKTSIEQNTDVESWVPLEYHGMQS 994
                                       G SKKQ K + +  +++ + E WVPL+YHG +S
Sbjct: 233  SGGSKRKNNVASEIPVKLEDSNQDKSVGSSKKQNKRMGSIEQRSNEEECWVPLKYHGSKS 292

Query: 993  SVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIK 814
              ++RY ++M+ +++S I F+MN YDYV+SLCP +     K           +PLEER K
Sbjct: 293  DFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSMPLEERFK 352

Query: 813  TLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL----KLKGIDA 646
             L+ EG  V +F    HFAP+D+ +DV+ VL  +  LVQGLW P+S LL    K+K    
Sbjct: 353  KLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNNDKMK---C 409

Query: 645  AIRDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLK 466
              RDYVLL FS+++V+  + L  S +        L+ FA+ RP   DWKF+   D  F+K
Sbjct: 410  LARDYVLLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDLSFIK 469

Query: 465  TYPHIVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPG--KQDLKRGVNGKPSS 292
             +P+IV  QEQ W   EK+I   + + +G S  ST+ N  G      + LK   +    S
Sbjct: 470  EHPNIVIKQEQVWAAAEKQITDVINK-LGKS-GSTLRNDAGKSAMVNKHLKAINSSNGPS 527

Query: 291  GSMT----MTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSR---X 133
            G++T    +++E+REAL KAL ++F   KVCSL +I+Q LRD A+++ST PK  +R    
Sbjct: 528  GALTGNKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRDLAISQSTLPKADARMTVL 587

Query: 132  XXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLSENQTLNPLR 1
                         E   +++Q ATNIHG YV+K SE+    PLR
Sbjct: 588  AAEIVDSSFVDTQEFAEVISQVATNIHGFYVSKSSEDPQHGPLR 631


>ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|557527706|gb|ESR38956.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 637

 Score =  376 bits (966), Expect = e-101
 Identities = 226/524 (43%), Positives = 311/524 (59%), Gaps = 27/524 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            +VREIDVF  P  D +S+L V+QYPLRP WRPY+LDERC EVR+KP + +VE+DLS+DVD
Sbjct: 113  IVREIDVFFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMDLSIDVD 172

Query: 1311 -NNYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
             NN+D+  A  L + KQTL+++  PP AT YA+G+L GNKLHLNPIHAVVQLR SM  LK
Sbjct: 173  SNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRTSMGFLK 232

Query: 1137 GXXXXXXXXXXXXXT------------GPSKKQGKAIKTSIEQNTDVESWVPLEYHGMQS 994
                                       G SKKQ K + +  +++ + E WVPL+YHG +S
Sbjct: 233  SGGSKRKNNVASEIPVKLEDSNQDKSVGSSKKQNKRMGSIEQRSNEEECWVPLKYHGSKS 292

Query: 993  SVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIK 814
              ++RY ++M+ +++S I F+MN YDYV+SLCP +     K           +PLEER K
Sbjct: 293  DFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSMPLEERFK 352

Query: 813  TLVSEGPQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL----KLKGIDA 646
             L+ EG  V +F    HFAP+D+ +DV+ VL  +  LVQGLW P+S LL    K+K    
Sbjct: 353  KLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNNDKMK---C 409

Query: 645  AIRDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLK 466
              RDYVLL FS+++V+  + L  S +        L+ FA+ RP   DWKF+   D  F+K
Sbjct: 410  LARDYVLLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDLSFIK 469

Query: 465  TYPHIVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPG--KQDLKRGVNGKPSS 292
             +P+IV  QEQ W   EK+I   + + +G S  ST+ N  G      + LK   +    S
Sbjct: 470  EHPNIVIKQEQVWAAAEKQITDVINK-LGKS-GSTLRNDAGKSAMVNKHLKAINSSNGPS 527

Query: 291  GSMT----MTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSR---X 133
            G++T    +++E+REAL KAL ++F   KVCSL +I+Q LRD A+++ST PK  +R    
Sbjct: 528  GALTGNKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRDLAISQSTLPKADARMTVL 587

Query: 132  XXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLSENQTLNPLR 1
                         E   +++Q ATNIHG YV+K SE+    PLR
Sbjct: 588  AAEIVDSSFVDTQEFAEVISQVATNIHGFYVSKSSEDPQHGPLR 631


>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
          Length = 732

 Score =  358 bits (919), Expect = 3e-96
 Identities = 231/525 (44%), Positives = 297/525 (56%), Gaps = 28/525 (5%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D  +QL VLQYPLRP WRPY+LDERC EVR+KP S +VE+DLSLDVD
Sbjct: 110  VVREIDVFFNPKIDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSEVEMDLSLDVD 169

Query: 1311 N-NYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHL- 1141
            + NYD    + L +TKQTL  S   P AT YAVG+L GNKLHLN IHAV+QLRPS++HL 
Sbjct: 170  SKNYDPDCGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVMQLRPSLKHLI 229

Query: 1140 -------------KGXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQN-TDVESWVPLEYHG 1003
                                         G SKKQ K   +S++Q   D E WVPL+YHG
Sbjct: 230  SAGSKKKNNVKVDAEDTVKLEESSGKKAIGSSKKQIKQENSSVKQKIADEEGWVPLKYHG 289

Query: 1002 MQSSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEE 823
             +S  + RY  KM  ++ S +QF+M+ YDY+NSLCP S   GN+           LPLEE
Sbjct: 290  SESESSVRYLRKMAVQESSPLQFTMSPYDYLNSLCPGSCKNGNEPKGPSRRALLSLPLEE 349

Query: 822  RIKTLVSEG-PQVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL----KLK 658
            RIK+L+ EG   V++F   KHFAPD +  ++L  LQ+HA LVQGLW PKS+LL    K  
Sbjct: 350  RIKSLLCEGLAPVHRFSVLKHFAPDCTTKEILDALQNHALLVQGLWAPKSSLLLGTSKET 409

Query: 657  GIDAAIRDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDT 478
            G     RDYVLLLF ++ V S   L             L+   + RP   DWKFK   D 
Sbjct: 410  GAQRIARDYVLLLFWKNPVFSFSSLHFPSSLKTAVNKFLNILGVERPSVKDWKFKGQTDI 469

Query: 477  LFLKTYPHIVRNQEQGWMNREKRIMGAVG-REVGNSLKSTMTNLDGTPGKQ-DLKRGVNG 304
             F+K YP +V+ QE+ W + E+ IM   G  + G   K+  T++   P K  +  +GV  
Sbjct: 470  SFIKNYPDVVKKQEEVWGDLERDIMNMFGDGKSGRGPKN--TSIPSRPVKPLNSNKGVPK 527

Query: 303  KPSS--GSMTMTDETREAL-SKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRX 133
              S   G   + D+ RE L SK L ++    KVCSLQ++ Q LR+ A+ K   PK   R 
Sbjct: 528  GTSEVVGGKKIPDDIREVLCSKILPKVIQEHKVCSLQLMCQGLRELALNKLNLPKADDR- 586

Query: 132  XXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLS-ENQTLNPLR 1
                      +P EL  ++++ A NIHG+YV K S E+   +P R
Sbjct: 587  FARAAACGTASPGELVKLLDETAINIHGLYVLKSSAEHPQYDPFR 631


>ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|10177619|dbj|BAB10766.1|
            unnamed protein product [Arabidopsis thaliana]
            gi|332008443|gb|AED95826.1| SIN-like protein [Arabidopsis
            thaliana]
          Length = 689

 Score =  358 bits (919), Expect = 3e-96
 Identities = 208/503 (41%), Positives = 291/503 (57%), Gaps = 18/503 (3%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDV- 1315
            VVREIDVF  P  D N+QL VLQYPLRP WRPY++DERC EVR+ P + QVE+DLS+DV 
Sbjct: 118  VVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSMDVH 177

Query: 1314 DNNYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
              NYD++    L +TKQTL T+ K P    YAVG+L+G+KLHLNP+HAV QLRPSM+ L 
Sbjct: 178  SKNYDSNF--GLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQSLS 235

Query: 1137 GXXXXXXXXXXXXXTGPSKKQGKAIK--TSIEQNTDVESWVPLEYHGMQSSVASRYREKM 964
                           G SKKQ K ++  ++ ++  + E+WV L+YHG+QS   SRY   M
Sbjct: 236  SDKKKKQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYCSRYLNGM 295

Query: 963  VSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSEGPQVN 784
            ++  +S I F+M+   Y+N LC   +   ++           LPL+ER++ L+ EG  + 
Sbjct: 296  MANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLLCEGSPLI 355

Query: 783  QFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKGIDAAIRDYVLLLFSRST 604
            ++   KH+AP+ SD+D L  LQ +  LVQGLW PK+ LLKL G   A RDYVL LFS++T
Sbjct: 356  RYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKTRLLKLDGPVEAARDYVLSLFSQNT 415

Query: 603  VISSKQLEGSERRIQVPL--HVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPHIVRNQEQG 430
             I   ++E +  +++ PL   +L+ FA  R    DWKFK   D  F+K+YP IV+ Q+  
Sbjct: 416  TIKYSEVEATGDKMK-PLMERMLTEFAKERHVLKDWKFKEPTDVSFIKSYPEIVKEQDIF 474

Query: 429  WMNREKRIMGAVGREVGNSLKSTMTNLDGTPG----KQDLKRGVNGKPSSGSMT------ 280
            W ++ + +   +  + G S      N+ GT      K ++   ++ K  S   T      
Sbjct: 475  WTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTVKPEVPTTLSDKGGSSKNTIHRVVT 534

Query: 279  --MTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXX 106
              M +E ++AL KAL ++F   KVC  + I Q LRD AV+ S NPK  S           
Sbjct: 535  QEMPEELKKALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMAVNVALAVD 594

Query: 105  XAPHELQSIVNQFATNIHGVYVA 37
                EL+ ++N  ATNIHG YV+
Sbjct: 595  AYQGELEDVINGVATNIHGSYVS 617


>ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutrema salsugineum]
            gi|557091693|gb|ESQ32340.1| hypothetical protein
            EUTSA_v10003751mg [Eutrema salsugineum]
          Length = 682

 Score =  358 bits (918), Expect = 4e-96
 Identities = 207/512 (40%), Positives = 298/512 (58%), Gaps = 15/512 (2%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D N++L VLQYPLRP WRPY++DERC  VR+ P + QVE+DLS+DV 
Sbjct: 114  VVREIDVFFNPSIDANTKLYVLQYPLRPSWRPYEMDERCEAVRVNPSTSQVEIDLSMDVH 173

Query: 1311 N-NYDTSVAENLRITKQTLTSS-KPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
            + NYD+     L +TKQTLT++ K P    YAVG+L+G+KLHLNP+HAV QLRPSME+L 
Sbjct: 174  SRNYDSKFGSELHMTKQTLTTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMEYLS 233

Query: 1137 GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEYHGMQSSVASRYREKMV 961
                           G SK+Q K ++ S +Q     E+WV L+YHG+QS   SRY   M+
Sbjct: 234  SKKKHAEATGESV--GTSKRQNKGVQASTDQKPIPEENWVALKYHGLQSEFCSRYLNGMM 291

Query: 960  SKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSEGPQVNQ 781
            +  +S I F+M+   Y+NSLC   +   ++           LPLEER++ L+ +GP + +
Sbjct: 292  ANGNSSIDFNMSPDVYINSLCRGESSRNSESRDSSKRVLTSLPLEERVQKLLCQGPPLFR 351

Query: 780  FKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKGIDAAIRDYVLLLFSRSTV 601
            +   KH+AP+ SD+D L VLQ +A LVQGLW PK+ LL+L G   A RDYVL+LFS+ + 
Sbjct: 352  YSVLKHYAPEFSDNDFLKVLQDYAWLVQGLWTPKTRLLQLDGPQEASRDYVLMLFSKGST 411

Query: 600  ISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPHIVRNQEQGWMN 421
            I+  ++  + R  +    +L+ FA  RP   DWKFK   D  F+K+Y  I   QE  W  
Sbjct: 412  ITYSEVAATGRLKEKITSMLTKFAKERPLLCDWKFKEPADVSFIKSYKEIANKQEIFWKA 471

Query: 420  REKRIMGAV---GREVGNSLKSTMTNLDGTPGKQDLKRGVNGKPSSG--------SMTMT 274
             ++++   +   G+   ++L++ +        K ++   ++ K  S            M+
Sbjct: 472  LDEKLTPKITQGGKSRADNLRNGVGKNPSGTVKPEIPTTLSDKGGSSRNAIHRFVGQKMS 531

Query: 273  DETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXXXAPH 94
            ++ R A+ KAL ++F + KVCS + I Q LRD AV+ S NPK  S               
Sbjct: 532  EDIRRAILKALKKVFQSHKVCSYETICQRLRDLAVSTSNNPKADSGMAQQVALAVDAHKE 591

Query: 93   ELQSIVNQFATNIHGVYVAKLS-ENQTLNPLR 1
            ELQ I+++   +IHG +V KLS ++   +PLR
Sbjct: 592  ELQQIISEVTVDIHGSFVYKLSPDHPEHDPLR 623


>ref|XP_006279575.1| hypothetical protein CARUB_v10025904mg [Capsella rubella]
            gi|482548279|gb|EOA12473.1| hypothetical protein
            CARUB_v10025904mg [Capsella rubella]
          Length = 800

 Score =  356 bits (913), Expect = 2e-95
 Identities = 209/513 (40%), Positives = 286/513 (55%), Gaps = 16/513 (3%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D ++QL VLQYPLRP WRPY++DERC EVR+ P + QVE+DLS+DV 
Sbjct: 284  VVREIDVFFKPSIDADTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSMDVH 343

Query: 1311 N-NYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
            + NYD+    N  +TKQTL T+ K P    YAVG+L+G+KLHLNP+HAV QLRPSM++L 
Sbjct: 344  SKNYDSKFGVN--VTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMDYLS 401

Query: 1137 GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEYHGMQSSVASRYREKMV 961
                           G SKKQ K  + S++Q   + ++WV L YHG+QS   SRY   M+
Sbjct: 402  SDGKKKKAESTEESAGTSKKQNKGAQASMDQKPINEDNWVALNYHGLQSEYCSRYLNGMI 461

Query: 960  SKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSEGPQVNQ 781
            +  +S + F+M+L  Y+N LC   +    +           LPL+ER++ L+ EG  + +
Sbjct: 462  ANGNSSLDFNMSLDVYINELCHGGSNRNTESKETMKRVLLSLPLKERVQKLLCEGSALLR 521

Query: 780  FKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKGIDAAIRDYVLLLFSRSTV 601
            +   KH+A + SD+D L  LQ    LVQGLW PK++LLKL G   A RDYVL LFS++T 
Sbjct: 522  YSVLKHYASEFSDEDFLEALQEFGWLVQGLWTPKTSLLKLDGPVGASRDYVLCLFSKNTT 581

Query: 600  ISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPHIVRNQEQGWMN 421
            I   ++E   R  +    +L  FA  RP  NDWKFK   D  F+K+YP IV  Q+     
Sbjct: 582  IKYSEIEAMGRLKETAKAILPAFAKQRPLLNDWKFKEPTDVSFIKSYPVIVEEQDSFHTE 641

Query: 420  REKRIMGAVGREVGNSLKSTMTNLDGTPGKQDLKRGV------------NGKPSSGSMTM 277
            R+K +   +  + G S      N+ G      +K  V            N  P      M
Sbjct: 642  RKKNLESMMSTQGGKSRVDNRRNIVGKNSSVTVKPEVPTTLSDKGGSSRNTIPRVVRQEM 701

Query: 276  TDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXXXAP 97
            ++E R AL KAL ++F   KVC  + I Q LRD AV  S NPK  S              
Sbjct: 702  SNELRGALPKALKKVFQTHKVCRYETICQGLRDLAVLTSNNPKADSGMAVNVALAVDAHQ 761

Query: 96   HELQSIVNQFATNIHGVYVAKLS-ENQTLNPLR 1
             EL+ ++++ A +IHG +V+  S ++   +PLR
Sbjct: 762  DELKDVISEVAVDIHGSFVSLSSPDHPEYDPLR 794


>ref|XP_007201935.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
            gi|462397466|gb|EMJ03134.1| hypothetical protein
            PRUPE_ppa002228mg [Prunus persica]
          Length = 698

 Score =  353 bits (907), Expect = 8e-95
 Identities = 224/524 (42%), Positives = 299/524 (57%), Gaps = 36/524 (6%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            +VREIDVF  P  D NSQL VLQYPLRP WRPY+L+ RC EVRLKP + ++E+DLSL++D
Sbjct: 110  IVREIDVFFNPHIDDNSQLYVLQYPLRPWWRPYELENRCEEVRLKPATSEMEIDLSLNLD 169

Query: 1311 -NNYDTSVAENLRITKQTL-TSSKP--PLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEH 1144
              NYD      L++TKQTL T+ KP     T YAVG+L G+KLHLNPI  VVQLRPS+EH
Sbjct: 170  PKNYDEDCGNRLKMTKQTLYTTWKPTRTTGTGYAVGVLMGDKLHLNPIDKVVQLRPSLEH 229

Query: 1143 LKG--------------XXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEY 1009
            LK                            +GPSKKQ K +++S E+ T D ESWVPL+Y
Sbjct: 230  LKSGSSRRKNSVTGDAEVKVKLEESRQETSSGPSKKQTKRMESSTEKKTEDEESWVPLQY 289

Query: 1008 HGMQSSVASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPL 829
            H  +S  +++Y  +MV ++ S IQF+M+ YDYVNSLCP  T +G+            LPL
Sbjct: 290  HSSESDFSAKYLRRMVGQESSPIQFTMSPYDYVNSLCP-RTCKGSS-----RRFLLSLPL 343

Query: 828  EERIKTLVSEGPQVNQFKAF-KHFAPDDSDDDVLAVLQHHADLV--QGLWVPKSTLL--- 667
            EERIK L+ E P   +F    K+FAPD + +++L VLQ HA L+   GLWVPK+ LL   
Sbjct: 344  EERIKKLLVEEPLARRFSDLKKYFAPDHTGEELLDVLQKHAQLLLDSGLWVPKTLLLYPS 403

Query: 666  -KLKGID----AAIRDYVLLLFSRSTVISSKQLEGSERRIQVPLHVLSPFAIFRPCSNDW 502
              +K  D       R+YVL LF ++TVIS+ QL   +         L   A+ RP S DW
Sbjct: 404  KDMKDRDHVARQTARNYVLNLFRKNTVISNSQLNLPQNHKNHAYESLKILAVSRPSSQDW 463

Query: 501  KFKVAKDTLFLKTYPHIVRNQEQGWMNREKRIMGAVGREVGNSLKSTMTNLDGTPGKQ-D 325
            K K   D  F + YP I ++QEQ W   E++++ A        +K+    +   PGK  +
Sbjct: 464  KLKEQSDKSFKELYPDIFKSQEQNWERMEEKLVNAFKAHTDRGVKNAC--MTSKPGKSLN 521

Query: 324  LKRGVNGKPSS---GSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTN 154
              +G     S    G  TM+DETR AL +A+ E+    KVC+ ++I + LR  AV KS+ 
Sbjct: 522  SDKGTTKSASDVQIGGRTMSDETRAALPEAIKEVLHEHKVCNFRLICEGLRRLAVRKSSL 581

Query: 153  PK--GVSRXXXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLS 28
            PK    ++             HELQ ++ Q A +IHG+YV K S
Sbjct: 582  PKVDPKTKRVIDAAYGVDAPQHELQKVICQVAADIHGLYVLKSS 625


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
            gi|358344405|ref|XP_003636280.1| DNA-directed RNA
            polymerase III subunit RPC5 [Medicago truncatula]
            gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
            gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  348 bits (894), Expect = 3e-93
 Identities = 213/511 (41%), Positives = 304/511 (59%), Gaps = 21/511 (4%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDV+  P  D +++L V+QYPLRP WRPYDLDE+C EVRLKP + +VEVDLS+D++
Sbjct: 108  VVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLE 167

Query: 1311 N-NYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
            + N + + A+ L+ TKQTL T+ KPP A   AVGLL G+KLHL+PIHAVVQLRPS  +L 
Sbjct: 168  SYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRHYLD 227

Query: 1137 GXXXXXXXXXXXXXTG----PSKKQGKAIKTSIEQNTDV-ESWVPLEYHGMQSSVASRYR 973
                                PS +Q      SIEQ +D  + WVPLEYHG +S ++SRY 
Sbjct: 228  SGGSEKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCKSDISSRYF 287

Query: 972  EKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSEGP 793
            ++MV+ + S I F M+ YDY+ +LCP  +      G         LP+E+R++TL+ EGP
Sbjct: 288  QQMVTHESSPINFEMSTYDYIATLCPGVSSNTLAKG-PSKRYLLSLPVEKRLQTLLIEGP 346

Query: 792  QVNQFKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL-KLKGIDAAIRDYVLLLF 616
             +++F A KHFAP+ SDD++L+VL+  A L++G WVP+S+LL    GI++  R+Y+L+ F
Sbjct: 347  PLHRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSLLFPTGGIESLARNYILVRF 406

Query: 615  SRSTVISS---KQLEGSERRIQVPLHVLSPFAI----FRPCSNDWKFKVAKDTLFLKTYP 457
             +S  + S   ++L G E   ++  H +  FA+     +   N WKFK   D  F+K +P
Sbjct: 407  HKSLTVKSDELRRLGGGELGNRMK-HFVMQFALEKFDLKSKENYWKFKELPDESFIKEFP 465

Query: 456  HIVRNQEQGWMNREKRIMGAVGREVG-NSLKSTMTNLD-----GTPGKQDLKRGVNGKPS 295
             +V+ QE+ +   E  +   +G   G   LKS +TN        T    D +    G+  
Sbjct: 466  IVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSGVNNALFTSTNSDPRATSLGEDP 525

Query: 294  SGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXX 115
              SMTM+ ETR AL  AL ++F   KVCS Q+I Q LR  A+A++  PKG S+       
Sbjct: 526  PRSMTMSSETRHALPIALKKLFQTHKVCSFQLICQELRGLALAQTMLPKGGSKMSVDAAN 585

Query: 114  XXXXAPHELQSIVNQFATNIHGVYVAKLSEN 22
                   EL++I+ + A +IHG YV K ++N
Sbjct: 586  SLDVPQDELKAILGEVACDIHGCYVLKSAQN 616


>ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arabidopsis lyrata subsp.
            lyrata] gi|297309830|gb|EFH40254.1| hypothetical protein
            ARALYDRAFT_495012 [Arabidopsis lyrata subsp. lyrata]
          Length = 676

 Score =  348 bits (893), Expect = 4e-93
 Identities = 203/501 (40%), Positives = 287/501 (57%), Gaps = 16/501 (3%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDVD 1312
            VVREIDVF  P  D N++L VLQYPLRP WRPY++DERC EVR+   + QVE+DLS+DV 
Sbjct: 106  VVREIDVFFNPSFDANTKLYVLQYPLRPSWRPYEMDERCEEVRVNTSTSQVEIDLSMDVH 165

Query: 1311 N-NYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
            + NYD++   N+  TKQTL T+ K P    YAVG+L+G+KLHLNP+HAV QLRPSM++L 
Sbjct: 166  SKNYDSNFGLNM--TKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQYLS 223

Query: 1137 GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNT-DVESWVPLEYHGMQSSVASRYREKMV 961
                           G SKKQ K ++ S +Q   + E+WV L+YHG+QS   S Y   M+
Sbjct: 224  SNGKKKQEESTEESVGTSKKQNKGVQASTDQKPINEETWVALKYHGLQSEYCSTYLNGMM 283

Query: 960  SKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTLVSEGPQVNQ 781
            +  +S + F+M+   Y+N LC   +   +++          LPLEER+K L+ EG  + +
Sbjct: 284  ANGNSSLDFNMSPDVYINELCRGGSSRNSELKETSKRVLLSLPLEERVKKLLCEGSPLLR 343

Query: 780  FKAFKHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLLKLKGIDAAIRDYVLLLFSRSTV 601
            +   KH+AP+ SD+D L  LQ    LVQGLW PK+ LL L     +IR+YVL LFS++T 
Sbjct: 344  YNVLKHYAPEFSDEDFLGALQEDGWLVQGLWTPKTKLLGLDENCRSIREYVLSLFSQNTT 403

Query: 600  ISSKQLEGS---ERRIQVPLHVLSPFAIFRPCSNDWKFKVAKDTLFLKTYPHIVRNQEQG 430
            I   ++E +     ++ +   +L+ FA  RP  NDWKFK   D  F+K+YP IV+ Q+  
Sbjct: 404  IKYSEVEATGFQREKMIIMKSMLTEFAKERPLLNDWKFKEPTDVSFIKSYPEIVKEQDIL 463

Query: 429  WMNREKRIMG--AVGREVGNSLKSTMTNLDGTPGKQDLKRGVNGKPSSGSMT-------- 280
            W NR+K I       +   ++ ++ +        K ++   ++ K  S   T        
Sbjct: 464  WTNRKKIIESILTTRKSRADNRRNVVGKNSSVTVKPEVPTTLSDKGGSSRNTIPRVVGQK 523

Query: 279  MTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTNPKGVSRXXXXXXXXXXXA 100
            M +E R AL KAL ++F   KVC  + I Q LRD AV+ S NPK  S             
Sbjct: 524  MPEELRWALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAY 583

Query: 99   PHELQSIVNQFATNIHGVYVA 37
              EL+ ++++ A NIHG YV+
Sbjct: 584  QDELKDVISEVAANIHGSYVS 604


>ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
            [Fragaria vesca subsp. vesca]
          Length = 685

 Score =  338 bits (868), Expect = 3e-90
 Identities = 215/524 (41%), Positives = 298/524 (56%), Gaps = 36/524 (6%)
 Frame = -3

Query: 1491 VVREIDVFLCPPQDPNSQLCVLQYPLRPRWRPYDLDERCREVRLKPKSFQVEVDLSLDV- 1315
            VVREIDVF  P  D N+QL VLQYPLRPRWRPY+L++RC E+R+KP + +VEVDLS+D+ 
Sbjct: 109  VVREIDVFFNPNVDSNTQLYVLQYPLRPRWRPYELEDRCEEIRVKPGTAEVEVDLSIDLY 168

Query: 1314 DNNYDTSVAENLRITKQTL-TSSKPPLATSYAVGLLTGNKLHLNPIHAVVQLRPSMEHLK 1138
              N D   A  L++TKQTL T   P  +T YAVG+L GNKLHLNP+HAVVQLRPS++HLK
Sbjct: 169  SKNCDQEFANRLKMTKQTLATEWDPCRSTGYAVGVLMGNKLHLNPVHAVVQLRPSLDHLK 228

Query: 1137 ----------GXXXXXXXXXXXXXTGPSKKQGKAIKTSIEQNTDVESWVPLEYHGMQSSV 988
                                      PSKKQ K +++S E   D ESWVPL+YHG +S  
Sbjct: 229  PGGSKRKGTATGDAEVAVKREEKSLAPSKKQNKRVESSTE---DEESWVPLQYHGSESDF 285

Query: 987  ASRYREKMVSKDDSLIQFSMNLYDYVNSLCPVSTLEGNKMGXXXXXXXXXLPLEERIKTL 808
            ++ Y ++MV +D S ++F+M  YDYVNSLCP +    +K           LPLEERI+ L
Sbjct: 286  SAGYLKRMVVQDSSPLEFTMTPYDYVNSLCPRTCKGSSKRA------LLNLPLEERIQKL 339

Query: 807  VSEGPQVNQFKAF-KHFAPDDSDDDVLAVLQHHADLVQGLWVPKSTLL--KLKGID---- 649
            + E P   +F    K++AP + + ++L VLQ +  L++GLWVPK+ LL  K +G      
Sbjct: 340  LVEEPIARRFSDLKKYYAPRNQEKELLDVLQKNGLLLRGLWVPKTALLYPKKEGSSRKKD 399

Query: 648  ----AAIRDYVLLLFSRSTVISSKQLEGSERRIQVPL-----HVLSPFAIFRPCSNDWKF 496
                   R+++L  F ++ VIS      SE  +  PL       L   A++RP + DWK 
Sbjct: 400  DDNLRTARNHILNSFQKNPVISY-----SELNVYPPLKPHFDETLKFLAVYRPSTRDWKL 454

Query: 495  KVAKDTLFLKTYPHIVRNQEQGWMNREKRIMGAV--GREVGNSLKSTMT----NLDGTPG 334
            K   D  F + +P I  +QEQ W   +K+++ A+   R++ N+  S+ T    N D  P 
Sbjct: 455  KEQSDVSFAELHPDISESQEQIWERMDKQLVEALKPHRDLKNASMSSKTGKLPNSDKGPN 514

Query: 333  KQDLKRGVNGKPSSGSMTMTDETREALSKALMEIFSNQKVCSLQVIQQSLRDRAVAKSTN 154
            K       +G PS G  TM+DET   L +A+ E+F  +KVCS Q+I  +L +  + +S +
Sbjct: 515  K-----SASGAPSGGVRTMSDETLAVLPQAIKEVFKTRKVCSFQLICDTLGNMTLERSQH 569

Query: 153  PK--GVSRXXXXXXXXXXXAPHELQSIVNQFATNIHGVYVAKLS 28
             K    SR            P EL++++ QFA  I GVYV K S
Sbjct: 570  AKVDPNSRKLTAVRNGLAAPPEELKNVITQFAVEIGGVYVLKSS 613