BLASTX nr result
ID: Sinomenium22_contig00030406
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00030406
(1460 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 62 4e-15
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 62 2e-13
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 62 2e-13
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 59 3e-13
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 59 3e-13
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 47 4e-13
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 67 3e-12
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 64 3e-12
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 67 3e-12
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 62 1e-11
gb|EPS64876.1| hypothetical protein M569_09903, partial [Genlise... 51 2e-11
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 60 5e-11
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 60 5e-11
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 56 5e-11
gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrat... 49 1e-10
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 59 1e-10
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 58 2e-10
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 60 2e-10
emb|CAN64031.1| hypothetical protein VITISV_037889 [Vitis vinifera] 56 3e-10
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 54 4e-10
>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 61.6 bits (148), Expect(4) = 4e-15
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Frame = -1
Query: 746 KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSFS*MAG- 579
K+ L ++ +EI L ++ K+ DG+ F+ W IIG D+ + F G
Sbjct: 709 KKSLDQVYRREEIELALKDMNPSKSPGSDGMPARFFQKFWNIIGNDVVDVCLRFLNGDGS 768
Query: 578 -----HSC*RYIPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQN 414
HS + L PK KK + IS+CN + L+SK NRLK V P VI +N
Sbjct: 769 IADFNHS----LIALIPKVQNPKKVTEYRPISLCNVVYKLVSKVLANRLKSVLPEVIAEN 824
Query: 413 QVALS----LRDN-LEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMR 249
Q A + DN + + C R K+ + ++ YD W F+++ M
Sbjct: 825 QSAFMSQRIIHDNIIAAFEIIHCLKRR--GKDSRQKIALKLDMTKAYDRVEWGFLQRMME 882
Query: 248 GMAFPE 231
M FP+
Sbjct: 883 VMGFPD 888
Score = 34.7 bits (78), Expect(4) = 4e-15
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -3
Query: 144 LRGHRGLRKGNPLSPYLFCITMQVMSTMLQ 55
++ RGLR+G+P+SPYLF I + +S +++
Sbjct: 915 IKPSRGLRQGDPISPYLFLIVAEGLSALIR 944
Score = 27.3 bits (59), Expect(4) = 4e-15
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 1015 MLARGKSIYKQKDRIQWLQLGDKKIKF 935
+L R + ++KQ+ R+ W + GD+ +F
Sbjct: 616 VLEREELLWKQRARVSWFKCGDRNTQF 642
Score = 25.0 bits (53), Expect(4) = 4e-15
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 909 KICSIQREEVNTREDPIDIKRYIVDYFSNI 820
+IC I E+ R D DI V YF N+
Sbjct: 655 RICGILGEDNRWRSDVTDIGCVFVSYFRNL 684
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 61.6 bits (148), Expect(2) = 2e-13
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Frame = -1
Query: 740 QL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSFS*MAGHSC 570
+L + +D EI L K PDG F+ TW IIG ++ + F +G
Sbjct: 302 ELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFF-DSGQLL 360
Query: 569 *RYIPC---LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL- 402
++ L PK S A F IS NTL +ISK T+RL+G+ VI +Q A
Sbjct: 361 KQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFL 420
Query: 401 ---SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAFPE 231
SL +N+ + G RL + +V +D+ WEFV A+R +A PE
Sbjct: 421 PGRSLAENVLLATEMVHGYNRL---NISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPE 477
Query: 230 HSSN 219
N
Sbjct: 478 RYIN 481
Score = 42.4 bits (98), Expect(2) = 2e-13
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -3
Query: 240 VP*TFIKW*CSV*QTQHSQFG*SGVTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMSTM 61
+P +I W T +G T F R +GLR+G+PLSPYLF + M+V S +
Sbjct: 475 IPERYINWIHQCITTPSFTISVNGATGG---FFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531
Query: 60 LQGEF 46
L +
Sbjct: 532 LYSRY 536
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 61.6 bits (148), Expect(2) = 2e-13
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Frame = -1
Query: 740 QL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSFS*MAGHSC 570
+L + +D EI L K PDG F+ TW IIG ++ + F +G
Sbjct: 302 ELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFF-DSGQLL 360
Query: 569 *RYIPC---LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL- 402
++ L PK S A F IS NTL +ISK T+RL+G+ VI +Q A
Sbjct: 361 KQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFL 420
Query: 401 ---SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAFPE 231
SL +N+ + G RL + +V +D+ WEFV A+R +A PE
Sbjct: 421 PGRSLAENVLLATEMVHGYNRL---NISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPE 477
Query: 230 HSSN 219
N
Sbjct: 478 RYIN 481
Score = 42.4 bits (98), Expect(2) = 2e-13
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -3
Query: 240 VP*TFIKW*CSV*QTQHSQFG*SGVTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMSTM 61
+P +I W T +G T F R +GLR+G+PLSPYLF + M+V S +
Sbjct: 475 IPERYINWIHQCITTPSFTISVNGATGG---FFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531
Query: 60 LQGEF 46
L +
Sbjct: 532 LYSRY 536
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 58.5 bits (140), Expect(2) = 3e-13
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Frame = -1
Query: 770 VNRIHDH*KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVR 600
V++I+D L R SD +I L KA PDG FK W ++G ++ E V+
Sbjct: 438 VDQIND-----LERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQ 492
Query: 599 SFS*MAGHSC*RYIPC---LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPT 429
F +G ++ L PK + + K +F IS NTL +I+K T+RLK +
Sbjct: 493 EFF-RSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNE 551
Query: 428 VINQNQVAL----SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVE 261
VI+ +Q A L +N+ + G K + S +V +D+ W+F+
Sbjct: 552 VISPSQSAFLPGRLLSENVLLATEIVHG---YNTKNISSRGMLKVDLRKAFDSVRWDFII 608
Query: 260 KAMRGMAFPE 231
A R +A PE
Sbjct: 609 SAFRALAVPE 618
Score = 44.7 bits (104), Expect(2) = 3e-13
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -3
Query: 168 VTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMSTMLQGEF 46
V S F + ++GLR+G+PLSPYLF + M+V S++L+ F
Sbjct: 637 VNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARF 677
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 58.5 bits (140), Expect(2) = 3e-13
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Frame = -1
Query: 770 VNRIHDH*KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVR 600
V++I+D L R SD +I L KA PDG FK W ++G ++ E V+
Sbjct: 438 VDQIND-----LERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQ 492
Query: 599 SFS*MAGHSC*RYIPC---LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPT 429
F +G ++ L PK + + K +F IS NTL +I+K T+RLK +
Sbjct: 493 EFF-RSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNE 551
Query: 428 VINQNQVAL----SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVE 261
VI+ +Q A L +N+ + G K + S +V +D+ W+F+
Sbjct: 552 VISPSQSAFLPGRLLSENVLLATEIVHG---YNTKNISSRGMLKVDLRKAFDSVRWDFII 608
Query: 260 KAMRGMAFPE 231
A R +A PE
Sbjct: 609 SAFRALAVPE 618
Score = 44.7 bits (104), Expect(2) = 3e-13
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -3
Query: 168 VTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMSTMLQGEF 46
V S F + ++GLR+G+PLSPYLF + M+V S++L+ F
Sbjct: 637 VNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARF 677
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 47.4 bits (111), Expect(4) = 4e-13
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 22/217 (10%)
Frame = -1
Query: 815 GSPLWLGNDHQ*DIQVNRIHDH*KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFK 645
G P+ + D + HD K++L S ++I + + K PDG FK
Sbjct: 367 GPPMLIQEDFDLLLPFRCSHDQ-KKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFK 425
Query: 644 ITWEIIGQDIREPVRSF--S*MAGHSC*RYIPCLFPKYSGAKKWKNFTTISVCN-----T 486
TW +IG ++ + V F S + L PK + A K +F IS CN T
Sbjct: 426 ETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPIS-CNDFGPIT 484
Query: 485 LNNLISKTSTNRLKGVRPTVINQNQVAL----SLRDNLEQYSYFSCGG*RL*QKEL*SYN 318
L +I++ TNRL+ + VI+ Q A L +N+ + G YN
Sbjct: 485 LYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQG-----------YN 533
Query: 317 SSEVRP--------P*PYDNSYWEFVEKAMRGMAFPE 231
+ P +D+ W+F+ A++ + P+
Sbjct: 534 RQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPD 570
Score = 45.8 bits (107), Expect(4) = 4e-13
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = -3
Query: 243 GVP*TFIKW*CSV*QTQHSQFG*SGVTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMST 64
G+P F+ W T +G T F + RGLR+GNPLSP+LF + M+V S+
Sbjct: 567 GIPDRFVYWITQCISTPTFSVCVNGNTGG---FFKSTRGLRQGNPLSPFLFVLAMEVFSS 623
Query: 63 MLQGEF 46
+L F
Sbjct: 624 LLNSRF 629
Score = 24.3 bits (51), Expect(4) = 4e-13
Identities = 8/44 (18%), Positives = 23/44 (52%)
Frame = -2
Query: 1045 ERGAREHYSLMLARGKSIYKQKDRIQWLQLGDKKIKFSYSLTNA 914
E A+ + +++ +S + Q+ R+ W+ GD + + + ++
Sbjct: 283 EMEAQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADS 326
Score = 24.3 bits (51), Expect(4) = 4e-13
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 861 IDIKRYIVDYFSNILG 814
+ IK + ++YFSN+LG
Sbjct: 348 LGIKEHCIEYFSNLLG 363
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 66.6 bits (161), Expect(2) = 3e-12
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Frame = -1
Query: 725 ISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC*RY 561
+SD EI N + + ++KA PDGL +K WEI+G D+ + V+ F + S
Sbjct: 810 LSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHT 869
Query: 560 IPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL----SLR 393
C+ PK + + ++ I++CN L +ISK RLKG +++ +Q A +
Sbjct: 870 NICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVN 929
Query: 392 DNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAFPE 231
DN+ ++ + ++ SY + + YD W F+E MR F E
Sbjct: 930 DNV-MIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSE 982
Score = 33.1 bits (74), Expect(2) = 3e-12
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = -3
Query: 144 LRGHRGLRKGNPLSPYLFCITMQVMSTMLQ 55
++ RG+R+G+PLSPYLF + +++ +++
Sbjct: 1009 IQPQRGIRQGDPLSPYLFILCADILNHLIK 1038
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 64.3 bits (155), Expect(2) = 3e-12
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 13/180 (7%)
Frame = -1
Query: 731 RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC* 567
R ++ +EI VL + N K+ PDG FK TW + G D ++SF
Sbjct: 748 REVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLN 807
Query: 566 RYIPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVALSLRDN 387
I L PK A + K++ IS CN L +ISK NRLK + P+ I QNQ A +++
Sbjct: 808 ATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAF-VKER 866
Query: 386 LEQYSYFSCGG*RL*QKEL*SYNSSEVRP--------P*PYDNSYWEFVEKAMRGMAFPE 231
L + L + + Y+ V P +D+ W+F+ + + FPE
Sbjct: 867 LLMENVL------LATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPE 920
Score = 35.4 bits (80), Expect(2) = 3e-12
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -3
Query: 147 FLRGHRGLRKGNPLSPYLFCITMQVMSTML 58
F RGLR+G LSPYLF I M V+S M+
Sbjct: 946 FFGSSRGLRQGCALSPYLFVICMNVLSHMI 975
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 66.6 bits (161), Expect(2) = 3e-12
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Frame = -1
Query: 725 ISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC*RY 561
+SD EI N + + ++KA PDGL +K WEI+G D+ + V+ F + S
Sbjct: 790 LSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHT 849
Query: 560 IPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL----SLR 393
C+ PK + + ++ I++CN L +ISK RLKG +++ +Q A +
Sbjct: 850 NICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVN 909
Query: 392 DNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAFPE 231
DN+ ++ + ++ SY + + YD W F+E MR F E
Sbjct: 910 DNV-MIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSE 962
Score = 33.1 bits (74), Expect(2) = 3e-12
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = -3
Query: 144 LRGHRGLRKGNPLSPYLFCITMQVMSTMLQ 55
++ RG+R+G+PLSPYLF + +++ +++
Sbjct: 989 IQPQRGIRQGDPLSPYLFILCADILNHLIK 1018
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 62.4 bits (150), Expect(2) = 1e-11
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Frame = -1
Query: 746 KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MA 582
+ L R ++ +E VL + + K PDG FK TW I GQD ++SF
Sbjct: 19 QDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFL 78
Query: 581 GHSC*RYIPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL 402
I L PK A +++ IS CN + +ISK NRLK + PT I QNQ A
Sbjct: 79 PKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAF 138
Query: 401 SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRP--------P*PYDNSYWEFVEKAMRG 246
+R+ L + L + + Y+ + P +D+ W+F+ +
Sbjct: 139 -VRERLLIENVL------LATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEA 191
Query: 245 MAFPEH 228
+ FPE+
Sbjct: 192 LNFPEN 197
Score = 35.4 bits (80), Expect(2) = 1e-11
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -3
Query: 147 FLRGHRGLRKGNPLSPYLFCITMQVMSTML 58
F RGLR+G LSPYLF I M V+S M+
Sbjct: 222 FFGSKRGLRQGCALSPYLFVICMNVLSHMI 251
>gb|EPS64876.1| hypothetical protein M569_09903, partial [Genlisea aurea]
Length = 842
Score = 50.8 bits (120), Expect(3) = 2e-11
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Frame = -1
Query: 767 NRIHDH*KQQL*RIISDKEINNVLHELENEKAIDPDG---LLFKITWEIIGQDIREPVRS 597
+R+ + + +L + +EI L ++ A PDG + F+ W I+ +++ E +
Sbjct: 262 SRLSEAMRDRLSAPFTSEEIWPALKSMKALSAPGPDGFSPVFFQRYWAIVHEEVSESILR 321
Query: 596 FS*MAGHSC*RYIP----CLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPT 429
+ GH + L PK S + F IS+CN L + SK NRLK + +
Sbjct: 322 L--LNGHQMEGDLNHTHIILIPKVSRPEAVHQFRPISLCNVLYKIASKMVANRLKPIMDS 379
Query: 428 VINQNQVAL----SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVE 261
+I + Q A ++ DN+ + L + + + S ++ YD W F+
Sbjct: 380 LITEEQSAFLPGRAIADNVLMAFEINHS---LRRNQSSIFGSLKLDVSKAYDRLEWSFIR 436
Query: 260 KAMRGMAFP 234
+ + MAFP
Sbjct: 437 EVLESMAFP 445
Score = 35.4 bits (80), Expect(3) = 2e-11
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -3
Query: 132 RGLRKGNPLSPYLFCITMQVMSTMLQ 55
RG+R+G+PLSPYLF + +S ML+
Sbjct: 477 RGIRQGDPLSPYLFILCADTLSAMLK 502
Score = 30.0 bits (66), Expect(3) = 2e-11
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Frame = -2
Query: 1129 WYFRSFQQIGGHSKKADA-------CPFNQKLIEEERGAREHYSLMLARGKSIYKQKDRI 971
WY + + KK +A P + I E + + +L + + +KQ ++
Sbjct: 129 WYQHQIVPLKTNIKKVEAELARLAVSPVDDSSIARETLLKAELTALLHQEELFWKQISKV 188
Query: 970 QWLQLGDKKIKFSYSLTNAI*DLFY-----SKRGSKYSRGSDRH*EVYS*LFLKHFRVAH 806
WL GD+ + ++ +A D + G ++S + H ++ F F ++H
Sbjct: 189 HWLAKGDRNTAYFHACASARKDFNHISSITDSDGVRHSAPREIH-TAFAVYFSGLFSLSH 247
Query: 805 YGWEMITSRT 776
E I S T
Sbjct: 248 PSQESILSST 257
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 60.1 bits (144), Expect(2) = 5e-11
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Frame = -1
Query: 722 SDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC*RYI 558
SD EI + + ++ ++KA PDGL +K W+I+G D+ V+ F + S
Sbjct: 811 SDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTN 870
Query: 557 PCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL----SLRD 390
C+ PK + ++ I++CN L +ISK NRLK ++++ +Q A + D
Sbjct: 871 ICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIIND 930
Query: 389 NLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAF 237
N+ ++ ++ ++ +Y + + YD W+F+E MR F
Sbjct: 931 NV-MIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 980
Score = 35.8 bits (81), Expect(2) = 5e-11
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 132 RGLRKGNPLSPYLFCITMQVMSTMLQGEFS 43
RG+R+G+PLSPYLF + ++S ++ G S
Sbjct: 1013 RGIRQGDPLSPYLFILCGDILSHLINGRAS 1042
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 60.1 bits (144), Expect(2) = 5e-11
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Frame = -1
Query: 722 SDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC*RYI 558
SD EI + + ++ ++KA PDGL +K W+I+G D+ V+ F + S
Sbjct: 585 SDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTN 644
Query: 557 PCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL----SLRD 390
C+ PK + ++ I++CN L +ISK NRLK ++++ +Q A + D
Sbjct: 645 ICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIIND 704
Query: 389 NLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAF 237
N+ ++ ++ ++ +Y + + YD W+F+E MR F
Sbjct: 705 NV-MIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 754
Score = 35.8 bits (81), Expect(2) = 5e-11
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 132 RGLRKGNPLSPYLFCITMQVMSTMLQGEFS 43
RG+R+G+PLSPYLF + ++S ++ G S
Sbjct: 787 RGIRQGDPLSPYLFILCGDILSHLINGRAS 816
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 56.2 bits (134), Expect(2) = 5e-11
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Frame = -1
Query: 722 SDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSFS*MAGHSC*RYIPC 552
S ++I N L KA PDG F W IIG ++ E + F +G ++
Sbjct: 345 SSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFF-TSGKLLKQWNAT 403
Query: 551 ---LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVA-LSLRDNL 384
L PK + A +F IS NT+ +ISK T+RLK P I+ +Q A + R L
Sbjct: 404 NLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFL 463
Query: 383 EQYSYFSCGG*RL*QKEL*SYNSSEVRPP--------*PYDNSYWEFVEKAMRGMAFPE 231
E L + + YN + P +D+ W+F+ A+R + PE
Sbjct: 464 ENV--------LLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPE 514
Score = 39.7 bits (91), Expect(2) = 5e-11
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = -3
Query: 132 RGLRKGNPLSPYLFCITMQVMSTMLQGEFS 43
+GLR+G+P+SPYLF + M+V S +LQ ++
Sbjct: 545 KGLRQGDPMSPYLFVLAMEVFSGLLQSRYT 574
>gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 48.5 bits (114), Expect(2) = 1e-10
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = -3
Query: 240 VP*TFIKW*CSV*QTQHSQFG*SGVTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMSTM 61
+P FI W + Q + F V S DF + +GLR+G+PLSPY F + ++V S +
Sbjct: 160 IPERFINW---INQCISTSFFSVSVNGSNCDFFKSTKGLRQGDPLSPYFFVLAIEVFSKL 216
Query: 60 LQGEF 46
LQ +F
Sbjct: 217 LQSKF 221
Score = 46.2 bits (108), Expect(2) = 1e-10
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Frame = -1
Query: 698 LHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC*RYIPCLFPKYS 534
+ L KA PDG F+ +W ++G ++ E +R F S + L PK +
Sbjct: 1 MFSLPRNKACGPDGFSAEFFRDSWSVVGAEVIEAIREFFISDCLLNQWNATTLVLIPKST 60
Query: 533 GAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL----SLRDNLEQYSYF 366
+F IS N L +I+K T RL+ + TVI+ +Q A L +N+ +
Sbjct: 61 SGSCTFDFRPISCLNKLYRVIAKLLTKRLQRLMSTVISSSQSAFLPGRLLPENV-LLAME 119
Query: 365 SCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAFPEHSSN 219
G L ++R +D+ W+F+ A+R +A PE N
Sbjct: 120 MVHGYNWRNISLRGMLKIDLRK--AFDSVRWDFIVSALRALAIPERFIN 166
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 59.3 bits (142), Expect(2) = 1e-10
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 13/190 (6%)
Frame = -1
Query: 761 IHDH*KQQL*RIISDKEINNVLHELENEKAIDPDG---LLFKITWEIIGQDIREPVRSFS 591
+ D K L I+ KE+ L+ ++ KA PDG + FK W I+G D+ VRS +
Sbjct: 419 LDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS-A 477
Query: 590 *MAGH---SC*RYIPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVIN 420
+ GH + + L PK +K+F IS+CNTL +I+K +RL+ +I
Sbjct: 478 FLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIG 537
Query: 419 QNQVAL----SLRDN---LEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVE 261
Q + DN L++ +F K Y + ++ +DN W+F+
Sbjct: 538 PYQSSFLPGRGTADNSIILQEILHFMKR-----SKRKKGYVAFKLDLEKAFDNVNWDFLN 592
Query: 260 KAMRGMAFPE 231
+ FP+
Sbjct: 593 SCLLDFGFPD 602
Score = 35.0 bits (79), Expect(2) = 1e-10
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -3
Query: 129 GLRKGNPLSPYLFCITMQVMSTMLQ 55
GLR+G+PLSPYLF + M+ +S +Q
Sbjct: 634 GLRQGDPLSPYLFILCMEKLSVAIQ 658
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 58.2 bits (139), Expect(2) = 2e-10
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 11/182 (6%)
Frame = -1
Query: 746 KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSFS*MAGH 576
K+ L R ++ EI+ L + N+KA DG FK +W I Q+I ++ F
Sbjct: 431 KESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEF--FNNS 488
Query: 575 SC*RYIPC----LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQV 408
R I C L PK A + K F I+ C + +ISK TNR+KG+ V+N+ Q
Sbjct: 489 RMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQS 548
Query: 407 AL----SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMA 240
+ DN+ S G R K + +V YD+ W F+E +
Sbjct: 549 GFIPGRHIADNILLASELIRGYTR---KHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFG 605
Query: 239 FP 234
FP
Sbjct: 606 FP 607
Score = 35.8 bits (81), Expect(2) = 2e-10
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -3
Query: 243 GVP*TFIKW*CSV*QTQHSQFG*SGVTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMST 64
G P F+ W T +G+ T + + +GLR+G+P+SP+LF + M+ +S
Sbjct: 605 GFPSRFVGWIMECVSTVSYSVLVNGIPTQPF---QARKGLRQGDPMSPFLFALCMEYLSR 661
Query: 63 MLQ 55
L+
Sbjct: 662 CLE 664
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 60.5 bits (145), Expect(2) = 2e-10
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Frame = -1
Query: 719 DKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREPVRSF--S*MAGHSC*RYIP 555
D EI + ++ ++KA PDGL +K W+I+G D+ + V+ F S S
Sbjct: 51 DSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNI 110
Query: 554 CLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL----SLRDN 387
C+ PK + ++ I++CN L +ISK NRLK ++++ +Q A + DN
Sbjct: 111 CMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDN 170
Query: 386 LEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAMRGMAF 237
+ ++ ++ ++ +Y + + YD W+F+E MR F
Sbjct: 171 V-MIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 219
Score = 33.1 bits (74), Expect(2) = 2e-10
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = -3
Query: 132 RGLRKGNPLSPYLFCITMQVMSTMLQ 55
RG+R+G+PLSPYLF + ++S +++
Sbjct: 252 RGIRQGDPLSPYLFILCGDILSHLIK 277
>emb|CAN64031.1| hypothetical protein VITISV_037889 [Vitis vinifera]
Length = 2193
Score = 55.8 bits (133), Expect(2) = 3e-10
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 5/185 (2%)
Frame = -1
Query: 776 IQVNRIHDH*KQQL*RIISDKEINNVLHELENEKAIDPDGL---LFKITWEIIGQDIREP 606
+Q+++I + L R S+ EI L E+ +KA PDG ++ WE I ++I E
Sbjct: 1028 LQLDQISQQEAETLERPFSEDEIYVALMEMNGDKAPGPDGFTMAFWQSCWEFIKEEILEM 1087
Query: 605 VRSFS*MAGH--SC*RYIPCLFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRP 432
+ F + S L PK SGA+ ++F IS+ L L++K NRLK V
Sbjct: 1088 FKDFYVHSSFLXSLNNTFLVLLPKKSGAEDLRDFRPISLLGGLYKLLAKVLANRLKKVVG 1147
Query: 431 TVINQNQVALSLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRPP*PYDNSYWEFVEKAM 252
V++ +Q A + S + QK+ ++ YD+ W+F+ K +
Sbjct: 1148 KVVSTSQNAFVKGRQILDASLIANEVIDTWQKQKEKGIICKLDIEKAYDSINWKFLVKVL 1207
Query: 251 RGMAF 237
+ M F
Sbjct: 1208 QKMGF 1212
Score = 37.4 bits (85), Expect(2) = 3e-10
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = -3
Query: 138 GHRGLRKGNPLSPYLFCITMQVMSTMLQ 55
G +GLR+G+PLSPYLF + M+V+ +++
Sbjct: 1213 GSKGLRQGDPLSPYLFIMGMEVLDVLIR 1240
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 54.3 bits (129), Expect(2) = 4e-10
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Frame = -1
Query: 740 QL*RIISDKEINNVLHELENEKAIDPDG---LLFKITWEIIGQDIREPVRSFS*MAGHSC 570
QL + I+ +EI+ L ++++ KA DG + FK +W +I Q+I E + F
Sbjct: 436 QLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDF--FENGFM 493
Query: 569 *RYIPC----LFPKYSGAKKWKNFTTISVCNTLNNLISKTSTNRLKGVRPTVINQNQVAL 402
+ I C L PK AK K++ I+ C+TL +ISK T RL+ V V++ Q
Sbjct: 494 HKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGF 553
Query: 401 ----SLRDNLEQYSYFSCGG*RL*QKEL*SYNSSEVRP--------P*PYDNSYWEFVEK 258
+ DN+ L + + YN V P YD+ W F+E
Sbjct: 554 IPERHIGDNI-----------LLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLES 602
Query: 257 AMRGMAFP 234
++ + FP
Sbjct: 603 MLKELGFP 610
Score = 38.5 bits (88), Expect(2) = 4e-10
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = -3
Query: 243 GVP*TFIKW*CSV*QTQHSQFG*SGVTTSRWDFLRGHRGLRKGNPLSPYLFCITMQVMS 67
G P FI+W + +T +G+ + +D +GLR+G+PLSP+LF ++M+ +S
Sbjct: 608 GFPSMFIRWIMACVKTVSYSILLNGIPSIPFD---AQKGLRQGDPLSPFLFALSMEYLS 663