BLASTX nr result
ID: Sinomenium22_contig00030026
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00030026
(344 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001233834.1| chloroplast-specific ribosomal protein [Sola... 84 2e-14
ref|XP_006347313.1| PREDICTED: ribosome-binding factor PSRP1, ch... 80 4e-13
ref|XP_004170169.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-bin... 79 5e-13
ref|XP_004147328.1| PREDICTED: ribosome-binding factor PSRP1, ch... 79 5e-13
gb|ACV83721.1| chloroplast ribosomal protein [Solanum tuberosum] 79 5e-13
ref|XP_007039204.1| Plastid-specific 30S ribosomal protein 1 [Th... 77 2e-12
ref|XP_006441240.1| hypothetical protein CICLE_v10021260mg [Citr... 75 1e-11
ref|XP_007218778.1| hypothetical protein PRUPE_ppa009612mg [Prun... 74 2e-11
ref|XP_004502759.1| PREDICTED: ribosome-binding factor PSRP1, ch... 74 3e-11
ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloropl... 74 3e-11
gb|AFK39464.1| unknown [Medicago truncatula] 73 4e-11
ref|XP_003602381.1| 30S ribosomal protein [Medicago truncatula] ... 73 4e-11
prf||1613445A ribosomal protein CS-S5 72 6e-11
ref|XP_006493202.1| PREDICTED: ribosome-binding factor PSRP1, ch... 72 6e-11
ref|XP_006840633.1| hypothetical protein AMTR_s00084p00117480 [A... 72 6e-11
gb|AAA34039.1| ribosomal protein 30S subunit [Spinacia oleracea] 72 6e-11
sp|P19954.2|PRSP1_SPIOL RecName: Full=Ribosome-binding factor PS... 72 6e-11
gb|EXB78385.1| 30S ribosomal protein 1 [Morus notabilis] 72 8e-11
ref|XP_007136436.1| hypothetical protein PHAVU_009G045100g [Phas... 72 8e-11
ref|XP_006394705.1| hypothetical protein EUTSA_v10004495mg [Eutr... 72 8e-11
>ref|NP_001233834.1| chloroplast-specific ribosomal protein [Solanum lycopersicum]
gi|51457950|gb|AAU03364.1| chloroplast-specific
ribosomal protein [Solanum lycopersicum]
Length = 311
Score = 84.0 bits (206), Expect = 2e-14
Identities = 48/83 (57%), Positives = 58/83 (69%)
Frame = -1
Query: 251 TFDPRLSSTLSSLHSCFFNRFSFSPFLEISPKHKEGMSRYFVVRMSWDGPLSTVNLILQG 72
T P LS TLSS +S F N S EI+ + +++ F VRMSWDGPLS+V LILQG
Sbjct: 34 TASPALSLTLSSTNSRFLN--SAFKMNEINVPVRNRVTKSFGVRMSWDGPLSSVKLILQG 91
Query: 71 KNLDLNDSVKKYVEEKVGKAVQK 3
KNL+L +VK YVEEK+GKAVQK
Sbjct: 92 KNLELTPAVKDYVEEKLGKAVQK 114
>ref|XP_006347313.1| PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Solanum
tuberosum]
Length = 312
Score = 79.7 bits (195), Expect = 4e-13
Identities = 47/83 (56%), Positives = 55/83 (66%)
Frame = -1
Query: 251 TFDPRLSSTLSSLHSCFFNRFSFSPFLEISPKHKEGMSRYFVVRMSWDGPLSTVNLILQG 72
T P S TLSS +S F N S EI+ + + F VRMSWDGPLS+V LILQG
Sbjct: 34 TASPAFSLTLSSSNSGFLN--SAFKKNEINVPVRNRVKNSFGVRMSWDGPLSSVKLILQG 91
Query: 71 KNLDLNDSVKKYVEEKVGKAVQK 3
KNL+L +VK YVEEK+GKAVQK
Sbjct: 92 KNLELTPAVKDYVEEKLGKAVQK 114
>ref|XP_004170169.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-binding factor PSRP1,
chloroplastic-like [Cucumis sativus]
Length = 310
Score = 79.3 bits (194), Expect = 5e-13
Identities = 48/112 (42%), Positives = 65/112 (58%)
Frame = -1
Query: 338 SSPLMAASLIYSIAQTSSLHVHQSLPHHRTFDPRLSSTLSSLHSCFFNRFSFSPFLEISP 159
S P ++S + + SLH H LSS S FFN +E +
Sbjct: 19 SPPFHSSSTVSYFPASFSLHFSALKVH----------ALSSNASAFFNSCKNFGTIETAS 68
Query: 158 KHKEGMSRYFVVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
+++ S F +RM+WDGPLS+V LI+QGKNL+L ++VKK+VEEKVGKAVQK
Sbjct: 69 RNRHA-SNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQK 119
>ref|XP_004147328.1| PREDICTED: ribosome-binding factor PSRP1, chloroplastic-like
[Cucumis sativus]
Length = 310
Score = 79.3 bits (194), Expect = 5e-13
Identities = 48/112 (42%), Positives = 65/112 (58%)
Frame = -1
Query: 338 SSPLMAASLIYSIAQTSSLHVHQSLPHHRTFDPRLSSTLSSLHSCFFNRFSFSPFLEISP 159
S P ++S + + SLH H LSS S FFN +E +
Sbjct: 19 SPPFHSSSTVSYFPASFSLHFSALKVH----------ALSSNASAFFNSCKNFGTIETAS 68
Query: 158 KHKEGMSRYFVVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
+++ S F +RM+WDGPLS+V LI+QGKNL+L ++VKK+VEEKVGKAVQK
Sbjct: 69 RNRHA-SNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQK 119
>gb|ACV83721.1| chloroplast ribosomal protein [Solanum tuberosum]
Length = 280
Score = 79.3 bits (194), Expect = 5e-13
Identities = 47/83 (56%), Positives = 55/83 (66%)
Frame = -1
Query: 251 TFDPRLSSTLSSLHSCFFNRFSFSPFLEISPKHKEGMSRYFVVRMSWDGPLSTVNLILQG 72
T P S TLSS +S F N S EI+ + + F VRMSWDGPLS+V LILQG
Sbjct: 6 TASPAFSLTLSSSNSGFLN--SAFKKNEINVPVRNRVKXSFGVRMSWDGPLSSVKLILQG 63
Query: 71 KNLDLNDSVKKYVEEKVGKAVQK 3
KNL+L +VK YVEEK+GKAVQK
Sbjct: 64 KNLELTPAVKDYVEEKLGKAVQK 86
>ref|XP_007039204.1| Plastid-specific 30S ribosomal protein 1 [Theobroma cacao]
gi|508776449|gb|EOY23705.1| Plastid-specific 30S
ribosomal protein 1 [Theobroma cacao]
Length = 320
Score = 77.4 bits (189), Expect = 2e-12
Identities = 44/80 (55%), Positives = 55/80 (68%)
Frame = -1
Query: 242 PRLSSTLSSLHSCFFNRFSFSPFLEISPKHKEGMSRYFVVRMSWDGPLSTVNLILQGKNL 63
PR+ S L S S F N S F +I + ++ VRMSWDGPLS+V LI+QGKNL
Sbjct: 42 PRIPS-LPSYKSSFLNPIGNS-FKDIETEPRKSRVCSLTVRMSWDGPLSSVKLIIQGKNL 99
Query: 62 DLNDSVKKYVEEKVGKAVQK 3
+L D+VK++VEEKVGKAVQK
Sbjct: 100 ELTDTVKQHVEEKVGKAVQK 119
>ref|XP_006441240.1| hypothetical protein CICLE_v10021260mg [Citrus clementina]
gi|557543502|gb|ESR54480.1| hypothetical protein
CICLE_v10021260mg [Citrus clementina]
Length = 313
Score = 74.7 bits (182), Expect = 1e-11
Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 338 SSPLMAASLIYSIAQTSSLHVHQSLPHHRTFDPRLSSTLSSLHSCFFNRFSFSPFLEISP 159
S P+ ++ + S + +SS S PR S +L +N F PF +I+
Sbjct: 13 SRPVPSSCYLSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLS---YNSSFFGPFKQITV 69
Query: 158 KHKEGM-SRYFVVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
+ ++ VRMSWDGPLS+V LI+QGKNL+L D+VK +VEEKVGKAV K
Sbjct: 70 MRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLK 122
>ref|XP_007218778.1| hypothetical protein PRUPE_ppa009612mg [Prunus persica]
gi|462415240|gb|EMJ19977.1| hypothetical protein
PRUPE_ppa009612mg [Prunus persica]
Length = 285
Score = 73.9 bits (180), Expect = 2e-11
Identities = 45/78 (57%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Frame = -1
Query: 227 TLSSLHSCFFNRFS-FSPF-LEISPKHK-EGMSRYFVVRMSWDGPLSTVNLILQGKNLDL 57
TLSS S FFN P + I P +K G S VRMSWDGPLS+V LI+QG+NL+L
Sbjct: 16 TLSSTSSTFFNPAKHLKPISIAIRPTNKCHGNS--LSVRMSWDGPLSSVKLIVQGRNLEL 73
Query: 56 NDSVKKYVEEKVGKAVQK 3
+++VKK+VE+KVGKAVQK
Sbjct: 74 SEAVKKHVEDKVGKAVQK 91
>ref|XP_004502759.1| PREDICTED: ribosome-binding factor PSRP1, chloroplastic-like [Cicer
arietinum]
Length = 302
Score = 73.6 bits (179), Expect = 3e-11
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 7/107 (6%)
Frame = -1
Query: 302 IAQTSSLHVHQSLPHHRTFDPRLSSTLSSLH---SCFFN----RFSFSPFLEISPKHKEG 144
+A ++ + H +LP + R LS + + FF +F ++ +P + G
Sbjct: 1 MAIATNFNFHTTLPPSSPYPTRCLPHLSKTNIPSTTFFGGGTLKFKYAAAFATTPTKRGG 60
Query: 143 MSRYFVVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
S VRMSWDGPLS+V LI+QGKN++L+D+VK++VEEKVG+A++K
Sbjct: 61 GS--LNVRMSWDGPLSSVKLIIQGKNMELSDAVKQHVEEKVGRAIEK 105
>ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Vitis
vinifera]
Length = 298
Score = 73.6 bits (179), Expect = 3e-11
Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Frame = -1
Query: 326 MAASLIYSIAQTSSLHVHQSLPHHRTFDPRLSSTLSSLHSC--FFNRFSFSPFLEISPKH 153
MAA + QT+S H Q P + ++ SL S + S L+++
Sbjct: 1 MAAPFPSAALQTASFH-RQYPPSPSPYSSSFLASSKSLRSLSNLSSSSGGSSILKLNATT 59
Query: 152 KEGMSRYFVVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
++ ++ VRMSWDGPLS+V LILQGKNL+L D+V+ +VEEKVGKAVQK
Sbjct: 60 RQ--TKPLAVRMSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQK 107
>gb|AFK39464.1| unknown [Medicago truncatula]
Length = 353
Score = 73.2 bits (178), Expect = 4e-11
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 9/89 (10%)
Frame = -1
Query: 242 PRLSSTLSSLHSCFF-------NRFSFSPFLEISPKHKEGMS--RYFVVRMSWDGPLSTV 90
P+LSS + L S F ++F + + K G S VVRMSWDGPLS+V
Sbjct: 71 PQLSSIKTKLPSTTFLTGEGGTSQFLKLKYAATTTTTKRGGSGGSLSVVRMSWDGPLSSV 130
Query: 89 NLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
LI+QGKN+ LND+VK++VEEKVG+AVQK
Sbjct: 131 KLIIQGKNMQLNDAVKQHVEEKVGRAVQK 159
>ref|XP_003602381.1| 30S ribosomal protein [Medicago truncatula]
gi|355491429|gb|AES72632.1| 30S ribosomal protein
[Medicago truncatula]
Length = 313
Score = 73.2 bits (178), Expect = 4e-11
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 9/89 (10%)
Frame = -1
Query: 242 PRLSSTLSSLHSCFF-------NRFSFSPFLEISPKHKEGMS--RYFVVRMSWDGPLSTV 90
P+LSS + L S F ++F + + K G S VVRMSWDGPLS+V
Sbjct: 31 PQLSSIKTKLPSTTFLTGEGGTSQFLKLKYAATTTTTKRGGSGGSLSVVRMSWDGPLSSV 90
Query: 89 NLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
LI+QGKN+ LND+VK++VEEKVG+AVQK
Sbjct: 91 KLIIQGKNMQLNDAVKQHVEEKVGRAVQK 119
>prf||1613445A ribosomal protein CS-S5
Length = 321
Score = 72.4 bits (176), Expect = 6e-11
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Frame = -1
Query: 293 TSSLHVHQSLPHHRTFDPRLSSTL---SSLHSCFFNRFSFSPFLEISPKHKE-GMSRYFV 126
TS+++++ +L + + LSSTL SSL S F N S L ++ K + ++ V
Sbjct: 6 TSAINMNPNLTNSLSNSINLSSTLTNLSSLRSTFTNSCSLG--LNVAVKSVQISRNKPNV 63
Query: 125 VRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
V MSWDGPLS+V LILQG+NL+++D+V+ +VE+KVGK+V K
Sbjct: 64 VCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAK 104
>ref|XP_006493202.1| PREDICTED: ribosome-binding factor PSRP1, chloroplastic-like
[Citrus sinensis]
Length = 319
Score = 72.4 bits (176), Expect = 6e-11
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = -1
Query: 239 RLSSTLSSLHSCFFNRFSFSPFLEISPKHKEGM-SRYFVVRMSWDGPLSTVNLILQGKNL 63
+L+ TLS +N F PF +I+ + ++ VRMSWDGPLS+V LI+QGKNL
Sbjct: 55 QLAKTLS------YNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNL 108
Query: 62 DLNDSVKKYVEEKVGKAVQK 3
+L D+VK +VEEKVGKAV K
Sbjct: 109 ELTDTVKNHVEEKVGKAVLK 128
>ref|XP_006840633.1| hypothetical protein AMTR_s00084p00117480 [Amborella trichopoda]
gi|548842364|gb|ERN02308.1| hypothetical protein
AMTR_s00084p00117480 [Amborella trichopoda]
Length = 266
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = -1
Query: 128 VVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
VVRMSWDGPLS+V LI+QGKNL+L D+VK ++EEKVGKAVQK
Sbjct: 35 VVRMSWDGPLSSVRLIIQGKNLELTDAVKSHIEEKVGKAVQK 76
>gb|AAA34039.1| ribosomal protein 30S subunit [Spinacia oleracea]
Length = 302
Score = 72.4 bits (176), Expect = 6e-11
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Frame = -1
Query: 293 TSSLHVHQSLPHHRTFDPRLSSTL---SSLHSCFFNRFSFSPFLEISPKHKE-GMSRYFV 126
TS+++++ +L + + LSSTL SSL S F N S L ++ K + ++ V
Sbjct: 6 TSAINMNPNLTNSLSNSINLSSTLTNLSSLRSTFTNSCSLG--LNVAVKSVQISRNKPNV 63
Query: 125 VRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
V MSWDGPLS+V LILQG+NL+++D+V+ +VE+KVGK+V K
Sbjct: 64 VCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAK 104
>sp|P19954.2|PRSP1_SPIOL RecName: Full=Ribosome-binding factor PSRP1, chloroplastic;
AltName: Full=30S ribosomal protein 1; AltName:
Full=CS-S5; Short=CS5; AltName: Full=Plastid-specific
30S ribosomal protein 1; Short=PSRP-1; AltName:
Full=Ribosomal protein 1; AltName: Full=S22; Flags:
Precursor gi|12316|emb|CAA41960.1| chloroplast ribosomal
protein S22 [Spinacia oleracea] gi|18031|emb|CAA33403.1|
spinach S22 r-protein [Spinacia oleracea]
Length = 302
Score = 72.4 bits (176), Expect = 6e-11
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Frame = -1
Query: 293 TSSLHVHQSLPHHRTFDPRLSST---LSSLHSCFFNRFSFSPFLEISPKHKE-GMSRYFV 126
TS+++++ +L + + LSST LSSL S F N S L ++ K + ++ V
Sbjct: 6 TSAINMNPNLTNSLSNSINLSSTPTNLSSLRSTFTNSCSLG--LNVAVKSVQISRNKPNV 63
Query: 125 VRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
V MSWDGPLS+V LILQG+NL+++D+V+ +VE+KVGK+V K
Sbjct: 64 VCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAK 104
>gb|EXB78385.1| 30S ribosomal protein 1 [Morus notabilis]
Length = 334
Score = 72.0 bits (175), Expect = 8e-11
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = -1
Query: 332 PLMAASLIYSIAQTSSLHVHQSLPHHRTFDPRLSSTLSSLHSCFFN--RFSFSPFLEISP 159
PL ++S S +S +L P++ S L+S S F N + + +EI P
Sbjct: 15 PLHSSSSSSSTVSSSCSSSMATLSTRPLVKPQILS-LTSKSSTFLNPCKILKTVSVEIMP 73
Query: 158 KHKEGMSRYFVVRMSWDGPLSTVNLILQGKNLDLNDSVKKYVEEKVGKAVQK 3
++K + VRMSWDGPLS+V LI+QGKNL+L ++VK +VEEKVGKAV K
Sbjct: 74 RNK-CRGNFRSVRMSWDGPLSSVKLIIQGKNLELTETVKSHVEEKVGKAVVK 124
>ref|XP_007136436.1| hypothetical protein PHAVU_009G045100g [Phaseolus vulgaris]
gi|561009523|gb|ESW08430.1| hypothetical protein
PHAVU_009G045100g [Phaseolus vulgaris]
Length = 330
Score = 72.0 bits (175), Expect = 8e-11
Identities = 53/136 (38%), Positives = 69/136 (50%), Gaps = 31/136 (22%)
Frame = -1
Query: 317 SLIYSIAQTSSLHVHQSLP---HHRTFDPRLSSTLSSLH-----SCFFNRFSFSPFLEIS 162
S+ S+ SS V ++ P H +F +TLSS H SC+ SP L +
Sbjct: 3 SVSLSLHALSSPSVTKNPPSSFHFPSFTLFSMATLSSFHTTLRPSCYLPSSPSSPNLLLP 62
Query: 161 PK------------HKEGMSRYFVV-----------RMSWDGPLSTVNLILQGKNLDLND 51
P H E + +Y RMSWDGPLS+V LI+QGKNL+L D
Sbjct: 63 PPLFSKTPSTTFLGHTERLLKYAATSTTNRARSLSARMSWDGPLSSVKLIIQGKNLELTD 122
Query: 50 SVKKYVEEKVGKAVQK 3
VK++VE+KVGKAVQK
Sbjct: 123 PVKQHVEDKVGKAVQK 138
>ref|XP_006394705.1| hypothetical protein EUTSA_v10004495mg [Eutrema salsugineum]
gi|557091344|gb|ESQ31991.1| hypothetical protein
EUTSA_v10004495mg [Eutrema salsugineum]
Length = 352
Score = 72.0 bits (175), Expect = 8e-11
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = -1
Query: 221 SSLHSCFFNRFSFSPFLEI-SPKHKEGMSRYFVVRMSWDGPLSTVNLILQGKNLDLNDSV 45
++L S F R ++ ++ S K G R V+MSWDGPL++V LI+QGKNL+L++ +
Sbjct: 82 NTLRSGFLGRVAYDDRRQVGSGSCKLGRRRSLAVKMSWDGPLASVKLIIQGKNLELSEPI 141
Query: 44 KKYVEEKVGKAVQK 3
K++VEEKVGK+VQK
Sbjct: 142 KQHVEEKVGKSVQK 155