BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00027901
         (690 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   103   9e-40
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   102   6e-39
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                109   5e-38
emb|CAN69367.1| hypothetical protein VITISV_035520 [Vitis vinifera]    97   8e-38
dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica G...   105   5e-37
gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japo...   105   5e-37
emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]    99   2e-36
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...    95   2e-36
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...   106   2e-35
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...   102   4e-35
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   103   5e-35
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      99   1e-34
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...   103   2e-34
emb|CAN69706.1| hypothetical protein VITISV_037595 [Vitis vinifera]    94   2e-34
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   103   3e-34
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    92   4e-34
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                   94   4e-34
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   103   4e-34
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...   101   7e-34
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]    89   2e-33

>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  103 bits (257), Expect(2) = 9e-40
 Identities = 46/98 (46%), Positives = 69/98 (70%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLPVDKIKRHTVCPNCQLAKSHALPFKISNYVSHAPLDLI 572
           WH  LGHAA  +V R++    +   K K  TVC +CQLAKSH LP  +S++ +  PL+L+
Sbjct: 486 WHHRLGHAATDIVTRIMHNCNVSCGKYKA-TVCSSCQLAKSHRLPTHLSSFHASKPLELV 544

Query: 573 FTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLK 686
           +TD+WGPASV ST+ A+Y + F+D+YS++ WL+ ++ K
Sbjct: 545 YTDIWGPASVTSTSGAKYFILFVDDYSRYTWLYLLQSK 582



 Score = 87.0 bits (214), Expect(2) = 9e-40
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           A+HH+T ++ANL   +  Y G D++ +GNG+ L IS T  + L ++ HSF L +V  VP 
Sbjct: 348 ASHHLTQNVANLT-NATPYTGADKVTIGNGKHLTISNTXFTRLFSNPHSFQLKKVFHVPF 406

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFFR 388
           I   L+S+ K C DNN   EFH   F +KD ++  VL QG++ NG ++
Sbjct: 407 ISANLISVAKFCSDNNALIEFHSNGFFLKDLHTKRVLAQGKLENGLYK 454


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  102 bits (253), Expect(2) = 6e-39
 Identities = 44/98 (44%), Positives = 69/98 (70%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLPVDKIKRHTVCPNCQLAKSHALPFKISNYVSHAPLDLI 572
           WH  LGHA+  +V +V++   +   K K   VC +CQLAKSH LP ++SN+ +  PL+L+
Sbjct: 491 WHNRLGHASFDIVSKVMNTCNVASGKYKSF-VCSDCQLAKSHRLPTQLSNFHASKPLELV 549

Query: 573 FTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLK 686
           +TD+WGPAS+ ST+ ARY + F+D+YS++ W + ++ K
Sbjct: 550 YTDIWGPASIKSTSGARYFILFVDDYSRYTWFYSLQTK 587



 Score = 85.9 bits (211), Expect(2) = 6e-39
 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           A+HH+T ++ NL   S  Y G D++ +GNG+ L IS   +  L++ +HSF L +V  VP 
Sbjct: 351 ASHHLTQNLGNLTSTSP-YTGTDKVTIGNGKHLSISNIGSKQLHSHTHSFRLKKVFHVPF 409

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFFR 388
           I   L+S+ K C +NN   EFH   F VKD ++  VL QG++ NG ++
Sbjct: 410 ISANLISVAKFCSENNALIEFHSNAFFVKDLHTKMVLAQGKLENGLYK 457


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  109 bits (273), Expect(2) = 5e-38
 Identities = 52/108 (48%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKISNY 545
           +V  SF++WH  LGH++  ++ RV+S NKLP +D+  + +VC  C  AKSH LP+  S  
Sbjct: 578 AVTPSFERWHSRLGHSSAPIISRVISKNKLPCLDESNKESVCDACLKAKSHQLPYSKSLS 637

Query: 546 VSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           +S  PL+L+F+DVWGPA V S  + +Y+VSF+D+YSKF W++ +K KS
Sbjct: 638 ISSHPLELVFSDVWGPAPV-SVGNKKYYVSFIDDYSKFTWIYLLKNKS 684



 Score = 75.1 bits (183), Expect(2) = 5e-38
 Identities = 40/104 (38%), Positives = 58/104 (55%)
 Frame = +2

Query: 26  HSHSFNK*PISSKCATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTS 205
           H+H+ +        AT HIT ++  L  + D Y G DQ+   +G G+ I    +S ++T 
Sbjct: 443 HTHARDSNWYVDTGATDHITSELEKLTAR-DVYKGHDQIHTASGSGMEIKHIGHSIVHTP 501

Query: 206 SHSFVLNRVLLVPQIQKILLSIQKLCIDNNVYFEFHDKYFLVKD 337
           +    LN VL VPQ  K L+S  KL  DN+V+ E H K+FL+KD
Sbjct: 502 TRPLHLNNVLHVPQANKNLISAHKLAADNSVFLEIHSKHFLIKD 545


>emb|CAN69367.1| hypothetical protein VITISV_035520 [Vitis vinifera]
          Length = 1083

 Score = 97.1 bits (240), Expect(2) = 8e-38
 Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLPVDKIKRH---TVCPNCQLAKSHALPFKISNYVSHAPL 563
           WH  LGHA+  +V +++    +  +K K     T C +CQLAKSH LP  +S   +  PL
Sbjct: 387 WHYRLGHASTDIVTQIMQSCNVSFEKNKNXVCSTXCSSCQLAKSHRLPTHLSLSCASKPL 446

Query: 564 DLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLK 686
           +L+ TD+WGPA V ST+ ARY + FLD+YS++ W +P++ K
Sbjct: 447 ELVHTDLWGPALVKSTSGARYFILFLDDYSRYTWFYPLQTK 487



 Score = 87.0 bits (214), Expect(2) = 8e-38
 Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           A HH+T  + NL   S  Y G D++ +GNG+ L IS T +  L + SHSF L +V  VP 
Sbjct: 246 ANHHLTQSVGNLT-SSSPYTGTDKVTIGNGKHLSISNTGSHRLLSDSHSFHLKKVFHVPF 304

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFFR 388
           I   L+S+ K C DNN   EF    F VKD ++  VL QG++ NG +R
Sbjct: 305 ISANLISVVKFCSDNNSLIEFRSNSFFVKDLHTKKVLAQGKLENGLYR 352


>dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 572

 Score =  105 bits (263), Expect(2) = 5e-37
 Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKISNY 545
           ++ +S  QWHC LGH +  +VQ+VLS N LP V +  +H+VC  CQ  KSH LP+  S  
Sbjct: 392 AIKLSPSQWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSVCDACQKGKSHQLPYSKSLS 451

Query: 546 VSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
            S APL+LI +DVWGPA   S     Y+VSF+D++SKF W++ +K KS
Sbjct: 452 RSSAPLELIHSDVWGPAP-TSVGKNNYYVSFVDDFSKFSWIYLLKHKS 498



 Score = 75.5 bits (184), Expect(2) = 5e-37
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT D+  L ++ + Y+G DQ+   +G G+ I++   S + T     +L  +L VP+
Sbjct: 274 ATDHITSDLDKLTVR-EKYNGGDQVHTASGSGMKINQIGQSIVRTQHRDLILKNILYVPE 332

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFF 385
             K L+S  +L  DN  + E   +YF +KD  +  +LHQG+   G +
Sbjct: 333 ANKSLISAHRLAFDNQAFLELFPRYFSIKDQVTRKLLHQGRCERGLY 379


>gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japonica Group]
          Length = 499

 Score =  105 bits (263), Expect(2) = 5e-37
 Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKISNY 545
           ++ +S  QWHC LGH +  +VQ+VLS N LP V +  +H+VC  CQ  KSH LP+  S  
Sbjct: 319 AIKLSPSQWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSVCDACQKGKSHQLPYSKSLS 378

Query: 546 VSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
            S APL+LI +DVWGPA   S     Y+VSF+D++SKF W++ +K KS
Sbjct: 379 RSSAPLELIHSDVWGPAP-TSVGKNNYYVSFVDDFSKFSWIYLLKHKS 425



 Score = 75.5 bits (184), Expect(2) = 5e-37
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT D+  L ++ + Y+G DQ+   +G G+ I++   S + T     +L  +L VP+
Sbjct: 201 ATDHITSDLDKLTVR-EKYNGGDQVHTASGSGMKINQIGQSIVRTQHRDLILKNILYVPE 259

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFF 385
             K L+S  +L  DN  + E   +YF +KD  +  +LHQG+   G +
Sbjct: 260 ANKSLISAHRLAFDNQAFLELFPRYFSIKDQVTRKLLHQGRCERGLY 306


>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
          Length = 1198

 Score = 99.4 bits (246), Expect(2) = 2e-36
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLPVDKIKR-------HTVCPNCQLAKSHALPFKISNYVS 551
           WH  LGHA+  +V +++    +  +K K         TVC +CQLAKSH LP  +S   +
Sbjct: 387 WHHRLGHASTNIVTQIMQSCNVSFEKNKNTVCSTVCSTVCSSCQLAKSHRLPTHLSLSCA 446

Query: 552 HAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLK 686
             PL+L+ TD+WGPASV ST+ ARY + FLD+YS++ W +P++ K
Sbjct: 447 SKPLELVHTDLWGPASVKSTSGARYFILFLDDYSRYTWFYPLQTK 491



 Score = 80.5 bits (197), Expect(2) = 2e-36
 Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           A HH+T  + NL   S  Y G D++ +GNG+ L IS T +  L + S SF L +V  V  
Sbjct: 246 ANHHLTQSVGNLT-SSSPYTGIDKVTIGNGKHLSISNTGSHRLLSDSRSFHLKKVFHVHF 304

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFFR 388
           I   L+S+ K  +DNN  FEF    F VKD ++  VL QG++ NG +R
Sbjct: 305 ISANLISVAKFYLDNNALFEFRSNSFFVKDLHTKKVLAQGKLENGLYR 352


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score = 94.7 bits (234), Expect(2) = 2e-36
 Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           ATHH+T D+ANL+L +  + G D++ VGNG+GL++  T +S++ TS  + +L  VL VP+
Sbjct: 373 ATHHVTSDLANLSLHNP-FSGDDKVIVGNGKGLYVLHTGHSSIPTSQGALLLKNVLHVPK 431

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKDYSAN-VLHQGQVSNGFF 385
           I   L+S+QKLC DNN Y EF+  YF VKD     +L +G +  G +
Sbjct: 432 IAANLVSVQKLCHDNNAYVEFYPSYFAVKDQKTQAILLKGGLDKGLY 478



 Score = 84.7 bits (208), Expect(2) = 2e-36
 Identities = 39/98 (39%), Positives = 58/98 (59%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLPVDKIKRHTVCPNCQLAKSHALPFKISNYVSHAPLDLI 572
           WH  LGH +  +V +VL+   LPV  ++   +C +CQLAKSH LPF  +   +  P DL+
Sbjct: 511 WHNRLGHPSLAIVNKVLNHYNLPVFSLQNKLLCDSCQLAKSHKLPFVRNYSKAMKPFDLV 570

Query: 573 FTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLK 686
             D+WG  S  S   A Y +  +D+YS+F WL+ ++ K
Sbjct: 571 HADLWGSPSCLSVNGACYFLLLIDDYSRFSWLYLLQSK 608


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
           sativa Japonica Group]
           gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
           protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  106 bits (265), Expect(2) = 2e-35
 Identities = 55/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLPV-DKIKRHTVCPNCQLAKSHALPFKISNY 545
           +VM SF++WH  LGHA+  +V RV++ NKLP  ++    +VC  CQ  KSH LPF     
Sbjct: 438 AVMPSFERWHGRLGHASKPIVLRVINQNKLPCSNESPSESVCDACQQGKSHQLPFPKFFS 497

Query: 546 VSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           VS  PL+LI +DVWGPAS  S  + RY+VSF+D+YSKF+W++ +K KS
Sbjct: 498 VSSNPLELIHSDVWGPAS-DSVGAKRYYVSFIDDYSKFVWIYFLKFKS 544



 Score = 69.7 bits (169), Expect(2) = 2e-35
 Identities = 35/90 (38%), Positives = 51/90 (56%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT  +  L  + + Y G DQ+   +G+G+ I    +S + TSS    L  +L VP+
Sbjct: 320 ATDHITGQLDKLTTR-EKYKGTDQIHTASGEGMDIQHIGHSYVPTSSRPLHLKNILHVPK 378

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD 337
             K L+S+ +L  DN  + E H KYFL+KD
Sbjct: 379 ASKNLISVHRLVADNYAFLEIHQKYFLIKD 408


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
           Japonica Group] gi|31431217|gb|AAP53032.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1042

 Score =  102 bits (253), Expect(2) = 4e-35
 Identities = 51/111 (45%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
 Frame = +3

Query: 360 KAKSVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKI 536
           +A +V  S ++WH  LGH +  +V +V+S NKLP + +  + +VC  CQ AKSH LP+  
Sbjct: 340 QAFAVAPSLERWHSRLGHPSIPIVMKVISSNKLPCLRESNKESVCDACQKAKSHQLPYSN 399

Query: 537 SNYVSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           S  VS+ PL+LI++DVWGPAS  S    +++VSF+D+Y KF W++ +K KS
Sbjct: 400 SMSVSNKPLELIYSDVWGPAS-TSFGGKKFYVSFIDSYRKFSWIYFLKHKS 449



 Score = 73.2 bits (178), Expect(2) = 4e-35
 Identities = 38/90 (42%), Positives = 53/90 (58%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT  +  LN + + Y G DQ+   +G G+ I    ++ ++T +    LN VL VPQ
Sbjct: 225 ATDHITSQLEKLNTR-EVYKGHDQIHTASGAGMKIKHIGHAIVHTPTRPLHLNNVLHVPQ 283

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD 337
             K L+S  KL  DN+V+ E H KYFL+KD
Sbjct: 284 AAKNLISATKLASDNSVFVEIHSKYFLIKD 313


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score =  103 bits (258), Expect(2) = 5e-35
 Identities = 56/116 (48%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
 Frame = +3

Query: 345 RMSFIKAKSVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHA 521
           R S  +A     SF +WH  LGH +  +V R+LS NKLP +      +VC  CQ AK H 
Sbjct: 429 RSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQAKCHQ 488

Query: 522 LPFKISNYVSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           LPF  S  VS+ PL+LI +DVWGPAS  S  + +Y+VSF+D+YSKF+W++ +K KS
Sbjct: 489 LPFPRSTSVSNNPLELIHSDVWGPAS-ESVGAKKYYVSFIDDYSKFVWIYFLKHKS 543



 Score = 70.9 bits (172), Expect(2) = 5e-35
 Identities = 37/90 (41%), Positives = 50/90 (55%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT  +  L  K + Y G DQ+   +G+G  I    ++ + T SH   L  VL VP+
Sbjct: 319 ATDHITGQLDKLTTK-ERYKGTDQIHTASGEGTSIKHVGHAIVPTPSHPLHLKNVLHVPE 377

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD 337
             K L+S+ KL  DN  + E H KYFL+KD
Sbjct: 378 AAKNLVSVHKLVADNYAFLEIHGKYFLIKD 407


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 98.6 bits (244), Expect(2) = 1e-34
 Identities = 49/100 (49%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKISNYVSHAPLDL 569
           WH  LGH + Q+VQ+V+S N LP + + K   VC  CQ  KSH LPF  S   S+ PL+L
Sbjct: 449 WHSRLGHPSWQIVQKVVSHNNLPCLGESKELGVCDACQKGKSHQLPFLKSTSASNFPLEL 508

Query: 570 IFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           +F+DVWGPA   S    +Y+VSF+D++SKF W++ +K KS
Sbjct: 509 VFSDVWGPAP-DSVGGRKYYVSFIDDFSKFTWIYLLKQKS 547



 Score = 74.7 bits (182), Expect(2) = 1e-34
 Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT+++  L  + D Y+G +Q+   +G G+ I     ST+ T + +  L  +L VP+
Sbjct: 321 ATDHITNELEKLTTR-DRYNGKEQIHTASGSGMDIKHIGQSTIRTPTRNLYLRNILHVPR 379

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFF 385
            +K L+S  +L +DN+ + E H ++F +KD  + N L +G   NG +
Sbjct: 380 TKKNLISAHRLAVDNHAFVEVHPRFFAIKDQITKNTLLRGPCCNGLY 426


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score =  103 bits (258), Expect(2) = 2e-34
 Identities = 56/116 (48%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
 Frame = +3

Query: 345 RMSFIKAKSVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHA 521
           R S  +A     SF +WH  LGH +  +V R+LS NKLP +      +VC  CQ AK H 
Sbjct: 438 RSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQAKCHQ 497

Query: 522 LPFKISNYVSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           LPF  S  VS+ PL+LI +DVWGPAS  S  + +Y+VSF+D+YSKF+W++ +K KS
Sbjct: 498 LPFPRSTSVSNNPLELIHSDVWGPAS-ESVGAKKYYVSFIDDYSKFVWIYFLKHKS 552



 Score = 68.9 bits (167), Expect(2) = 2e-34
 Identities = 36/90 (40%), Positives = 50/90 (55%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT  +  L  K + Y G DQ+   +G+G+ I    ++ + T S    L  VL VP+
Sbjct: 328 ATDHITGQLDKLTTK-ERYKGTDQIHTASGEGMSIKHVGHAIVPTPSRPLHLKNVLHVPE 386

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD 337
             K L+S+ KL  DN  + E H KYFL+KD
Sbjct: 387 AAKNLVSVHKLVADNYAFLEIHGKYFLIKD 416


>emb|CAN69706.1| hypothetical protein VITISV_037595 [Vitis vinifera]
          Length = 431

 Score = 93.6 bits (231), Expect(2) = 2e-34
 Identities = 40/103 (38%), Positives = 63/103 (61%)
 Frame = +3

Query: 381 SFDQWHCCLGHAAPQVVQRVLSFNKLPVDKIKRHTVCPNCQLAKSHALPFKISNYVSHAP 560
           S D WH  LGH +  +V+ ++S   LP    K   +C +C + KSH  PF  ++  S  P
Sbjct: 308 SLDGWHKRLGHPSYPIVKNLVSTFSLPTTTNKMTMLCRSCSINKSHQQPFHTTSLSSXGP 367

Query: 561 LDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           L++I+TDVWGPA       +RY++ F+D+Y+K++W +P+  KS
Sbjct: 368 LEIIYTDVWGPAHSTGLDGSRYYLLFVDHYTKYMWFYPMATKS 410



 Score = 79.0 bits (193), Expect(2) = 2e-34
 Identities = 38/107 (35%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           A+H+I  D+ NL++ S+ YDG D++ +G+G GL +S   +  +++ + +F+L   L VP 
Sbjct: 181 ASHNIIGDLQNLSIHSE-YDGTDEVVLGDGSGLAVSHVGSLAIHSPNRTFILRDTLCVPN 239

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFF 385
           ++K ++S+      NNVY EFH  YFLVK+  +  +L +G   N  +
Sbjct: 240 LKKNMISVHHFTSQNNVYVEFHPSYFLVKEPITGAILLRGSCENDIY 286


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score =  103 bits (256), Expect(2) = 3e-34
 Identities = 50/108 (46%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKISNY 545
           ++  SF++WH  LGH A  +V++V+S N LP + +  + +VC  CQ  KSH LP+  S+ 
Sbjct: 450 AIKPSFERWHSRLGHPASPIVEKVISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSS 509

Query: 546 VSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           +S  PL+LI++DVWGPA + S    +Y+VSF+ +YSKF WL+ IK KS
Sbjct: 510 MSSHPLELIYSDVWGPA-LTSVGGKQYYVSFIGDYSKFTWLYLIKHKS 556



 Score = 68.9 bits (167), Expect(2) = 3e-34
 Identities = 35/96 (36%), Positives = 53/96 (55%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT H+T ++  L ++ D Y G DQ+   +G G+ IS   +ST+ T +    L  +L VP 
Sbjct: 325 ATDHVTGELDKLTVR-DRYKGQDQVHTASGAGMEISHIGHSTVRTPNRDIHLRNILYVPN 383

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKDYSANVL 355
             K L+S  +L  DN+ Y E + KYF +KD +   L
Sbjct: 384 ANKNLVSANRLVSDNSAYMELYSKYFNLKDLATKKL 419


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 91.7 bits (226), Expect(2) = 4e-34
 Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLP-VDKIKRHTVCPNCQLAKSHALPFKISNY 545
           S  V  + WH  LGH +  +V RV+S N LP +      +VC  C  AK+H LP+ IS  
Sbjct: 450 STRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMS 509

Query: 546 VSHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
            S APL LIF+DV+GPA + S    +Y+VSF+D+YSKF W++ ++ KS
Sbjct: 510 QSSAPLMLIFSDVFGPA-IDSFGRYKYYVSFIDDYSKFTWIYLLRHKS 556



 Score = 80.1 bits (196), Expect(2) = 4e-34
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT D+  L +  D Y G DQ+   NG G+ IS   N+ + TSS S  L  VL VP 
Sbjct: 329 ATDHITGDLDRLTMH-DKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPS 387

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKDYSAN-VLHQGQVSNGFF 385
             K L+S+ +L  DN+V+ EFH  +FL+KD     VL  G+  +G +
Sbjct: 388 THKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLY 434


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 94.0 bits (232), Expect(2) = 4e-34
 Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
 Frame = +3

Query: 378 VSFDQWHCCLGHAAPQVVQRVLSFNKLP--VDKIKRHTVCPNCQLAKSHALPFKISNYVS 551
           +S  +WH  LGH +  +V++V+S N LP  V+ + + +VC  CQ AKS  LP+  S  VS
Sbjct: 453 LSLSRWHSRLGHPSLPIVKQVISKNNLPCSVESVNQ-SVCNACQEAKSRQLPYVRSTSVS 511

Query: 552 HAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
             PL+L+F+DVWGPA   S    +Y+VSF+D++SKF W++ +K KS
Sbjct: 512 QFPLELVFSDVWGPAP-ESVGRNKYYVSFIDDFSKFTWIYLLKYKS 556



 Score = 77.8 bits (190), Expect(2) = 4e-34
 Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT ++  L  K + Y+G +Q+   +G G+ IS   ++T++T S +  LN VL VPQ
Sbjct: 328 ATDHITGELEKLTTK-EKYNGNEQIHTASGAGMDISHIGHTTVHTPSRNIHLNNVLYVPQ 386

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFF 385
            +K L+S  +L  DN+ + E H K+F +KD  + ++L +G+  +G +
Sbjct: 387 AKKSLISASQLATDNSAFLELHSKFFSIKDQVTKDILLEGRCRHGLY 433


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
           Group]
          Length = 1399

 Score =  103 bits (256), Expect(2) = 4e-34
 Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
 Frame = +3

Query: 381 SFDQWHCCLGHAAPQVVQRVLSFNKLPVDKI-KRHTVCPNCQLAKSHALPFKISNYVSHA 557
           SF +WH  LGH A  +V RVLS N LP   +  + ++C  CQ  KSH LP+  S+ VS  
Sbjct: 416 SFSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKDSICDACQKGKSHQLPYPKSSSVSSQ 475

Query: 558 PLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           PL+LIF++VWGPA + S    +++VSF+D+YSKF W++ +K KS
Sbjct: 476 PLELIFSNVWGPAPI-SVGGKKFYVSFIDDYSKFTWVYLLKHKS 518



 Score = 68.6 bits (166), Expect(2) = 4e-34
 Identities = 32/90 (35%), Positives = 54/90 (60%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           AT HIT+++  L+++ + Y G D++   +G G+ I    +S ++T +    L  +L VPQ
Sbjct: 294 ATDHITNELDKLDVR-EKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELHLKNILHVPQ 352

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD 337
            +K L+S  +L +DN  + E H  YFL+KD
Sbjct: 353 AKKNLISAHRLAMDNFAFLEVHSNYFLIKD 382


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 807

 Score =  101 bits (252), Expect(2) = 7e-34
 Identities = 49/107 (45%), Positives = 69/107 (64%)
 Frame = +3

Query: 369 SVMVSFDQWHCCLGHAAPQVVQRVLSFNKLPVDKIKRHTVCPNCQLAKSHALPFKISNYV 548
           SV  SF +WH  L H    +V RV++ NKLP  K    +VC  CQ AKSH LP+  S  V
Sbjct: 414 SVAPSFARWHSRLSHPTTPIVSRVVNQNKLPCQKSHSESVCDACQKAKSHQLPYSRSTSV 473

Query: 549 SHAPLDLIFTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLKS 689
           S  PL+L+++DVWG A  +S    +++VSF+D++SKF W++ +K KS
Sbjct: 474 STRPLELVYSDVWGTAP-SSVGGNKFYVSFIDDFSKFTWVYSLKHKS 519



 Score = 69.3 bits (168), Expect(2) = 7e-34
 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNT-SSHSFVLNRVLLVP 244
           AT HIT ++  L ++ + Y G +++   NG G+ I    ++ ++T  +H+  L  VL VP
Sbjct: 296 ATDHITSELDKLTVR-EKYKGTEKIHTANGVGMQIKHIGHALVHTPDNHTLHLKNVLHVP 354

Query: 245 QIQKILLSIQKLCIDNNVYFEFHDKYFLVKDYS-ANVLHQGQVSNGFF 385
              K L+S  +L  DN V+ E H KYFLVKD +  N++ +G+   G +
Sbjct: 355 HATKNLISASRLAEDNYVFLEIHSKYFLVKDRAMRNIILKGRCRKGLY 402


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score = 88.6 bits (218), Expect(2) = 2e-33
 Identities = 39/98 (39%), Positives = 61/98 (62%)
 Frame = +3

Query: 393 WHCCLGHAAPQVVQRVLSFNKLPVDKIKRHTVCPNCQLAKSHALPFKISNYVSHAPLDLI 572
           WH  LGH A  +++ +L+   +   +  ++ VC  CQ AKSH LPF +    +  PL L+
Sbjct: 522 WHSRLGHPADNILKHILTSCNIS-HQCHKNNVCCACQFAKSHKLPFNVXVSRASHPLALL 580

Query: 573 FTDVWGPASVASTTSARYHVSFLDNYSKFLWLFPIKLK 686
             D+WGP S+ STT ARY + F+D++S+F W++P+  K
Sbjct: 581 HADLWGPXSIPSTTGARYFILFVDDFSRFSWIYPLHSK 618



 Score = 80.9 bits (198), Expect(2) = 2e-33
 Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
 Frame = +2

Query: 68  ATHHITHDMANLNLKSDDYDGPDQLQVGNGQGLHISKTDNSTLNTSSHSFVLNRVLLVPQ 247
           ATHH++  +  L+     Y G D++ VGNG+ L I  T  +   +SS +F L +VL VP 
Sbjct: 384 ATHHLSQSIDPLS-DVQPYMGNDKVIVGNGKHLRILHTGTTFFPSSSKTFQLRQVLHVPD 442

Query: 248 IQKILLSIQKLCIDNNVYFEFHDKYFLVKD-YSANVLHQGQVSNGFFR 388
           I   L+S+ + C DNN +FEFH ++F VKD  +  +L QG + +G +R
Sbjct: 443 IATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYR 490