BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00025643
         (852 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   117   4e-24
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               112   2e-22
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   108   2e-21
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   107   7e-21
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   102   1e-19
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...   101   3e-19
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               100   5e-19
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...   100   9e-19
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    99   2e-18
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    99   2e-18
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    97   8e-18
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        96   2e-17
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 95   3e-17
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              95   3e-17
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            92   3e-16
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    91   6e-16
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    89   2e-15
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]                          88   4e-15
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    88   5e-15
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    86   2e-14

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  117 bits (294), Expect = 4e-24
 Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 26/240 (10%)
 Frame = -3

Query: 655  LLQFHESISKWLSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQC 476
            ++ F +  SK +  T+ I E+F + S LK+S EKS+IF+AG S     +I  +       
Sbjct: 854  IMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGT 913

Query: 475  LPVKFL------------------QQIRI-YSSKTGF*PSFC---QG*AYTLCGIV-FWR 365
            LPVK+L                  ++IR   +S T    SF    Q     L  I  FW 
Sbjct: 914  LPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWL 973

Query: 364  *EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMN 188
              +V+ LP   ++  E++   FL +G + N +K   I+W + C+ KEEGG+ ++ +K+ N
Sbjct: 974  --SVFRLPKACLQEIEKMFSAFLWSGPDLNTKK-AKIAWSEVCKLKEEGGLGLKPLKEAN 1030

Query: 187  YASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSF-QPPGDASWVWRKLIKMRDKVRNF 14
              S+LKL+W ++S +D +WVKW     ++K+ FWS  +  G  SW+WRK++K RDK R F
Sbjct: 1031 EVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLF 1090


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  112 bits (280), Expect = 2e-22
 Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 30/248 (12%)
 Frame = -3

Query: 655  LLQFHESISKWLSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQC 476
            L+   +  ++ +   +E+ +EF   SGL++S EKS++++AG S  +   IAAK       
Sbjct: 354  LMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQ 413

Query: 475  LPVKFL------------------QQI---------RIYSSKTGF*PSFCQG*AYTLCGI 377
            LPV++L                  +QI         R +S    F  +  +   +++C  
Sbjct: 414  LPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRF--NLIKSVLWSICN- 470

Query: 376  VFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKI 200
             FW   A + LP + IR  +++  +FL +G E +  K   ISWD  C+ K EGG+ +R +
Sbjct: 471  -FWL--AAFRLPRQCIREIDKLCSSFLWSGSEMSSHK-AKISWDIVCKPKAEGGLGLRNL 526

Query: 199  KDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSF-QPPGDASWVWRKLIKMRDK 26
            K+ N  S LKL+W ++S  + +W KW     ++K   WS  Q     SW+WRK++K+RD 
Sbjct: 527  KEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDV 586

Query: 25   VRNFTSVQ 2
             ++F+ V+
Sbjct: 587  AKSFSRVE 594


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  108 bits (271), Expect = 2e-21
 Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 30/236 (12%)
 Frame = -3

Query: 622 LSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAM-------FDAIAAKGGLIRQCLPV- 467
           L   +E+ + F   SGLK+S  K++I+ AG S ++       F     +  +   CLP+ 
Sbjct: 236 LEGIVEVFDSFAKQSGLKISMAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLV 295

Query: 466 ----------KFLQQIR-----------IYSSKTGF*PSFCQG*AYTLCGIVFWR*EAVY 350
                       L+QI+            Y+ +     S      +++C   FW   + +
Sbjct: 296 TKRFTSQDYSPLLEQIKRRIGTWTARFLSYAGRLNLVSSVL----WSICN--FWL--SAF 347

Query: 349 GLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILK 170
            LP E +R  +++   FL    +       I+W+  CR K EGG+ ++ IK+ N    LK
Sbjct: 348 RLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLK 407

Query: 169 LLWWVVS-GKDIWVKWARLIYLKKDYFWSFQPPGDASWVWRKLIKMRDKVRNFTSV 5
           L+W +VS G  +WV+W R   LK++ FWSF+     SW+W+KL+K RD  + F+ V
Sbjct: 408 LIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKV 463


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  107 bits (266), Expect = 7e-21
 Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 32/235 (13%)
 Frame = -3

Query: 610  MEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFL--------- 458
            +++ +EF  WSGL++S EKS++++AG S    + +A +       LPV++L         
Sbjct: 722  IKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRL 781

Query: 457  ---------QQIR-----------IYSSKTGF*PSFCQG*AYTLCGIVFWR*EAVYGLPV 338
                     +Q+R            Y+ +     S      +++C   FW   A + LP 
Sbjct: 782  STTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVL----WSICN--FWL--AAFRLPR 833

Query: 337  ETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLW 161
            + IR  E++   FL +G E N  K   ISW   C+ K+EGG+ +R +K+ N    LKL+W
Sbjct: 834  KCIRELEKMCSAFLWSGTEMNSNK-AKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVW 892

Query: 160  WVVS-GKDIWVKWARLIYLKKDYFWSF-QPPGDASWVWRKLIKMRDKVRNFTSVQ 2
             +VS    +WVKW     L+   FW   Q     SW+W+KL+K R+  +  + V+
Sbjct: 893  KIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVE 947


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  102 bits (255), Expect = 1e-19
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 26/229 (11%)
 Frame = -3

Query: 610 MEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFLQQIRIYS-- 437
           +E++  F   SGL+++ EK++++ AG S      + ++       LPV++L    +    
Sbjct: 127 VEVMNLFAKRSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRL 186

Query: 436 SKTGF*PSFCQ----------------G*AYTLCGIV-----FWR*EAVYGLPVETIRRA 320
           +K    P F Q                G    +  ++     FW   + + LP   ++  
Sbjct: 187 TKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWM--SAFRLPSACLKEI 244

Query: 319 EQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWVVSGK 143
             I   FL +G E ++RK   +SWDD C+ K+EGG+ +R + + N  S+LKL+W V S  
Sbjct: 245 NSICSAFLWSGPELHRRK-AKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSND 303

Query: 142 D-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNFTSVQ 2
           D +WVKW+++  LK++ FWS  P     SW+W+K++K R+  + F+ V+
Sbjct: 304 DSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVE 352


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score =  101 bits (252), Expect = 3e-19
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 26/229 (11%)
 Frame = -3

Query: 610  MEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFLQQIRIYS-- 437
            +E++  F   SGLK++ EK++++ AG S      + ++       LPV++L    +    
Sbjct: 639  VEVMNLFAKRSGLKINMEKTTLYTAGVSDHNRHMMISRYPFGLAQLPVRYLGLPLVTKRL 698

Query: 436  SKTGF*PSFCQ----------------G*AYTLCGIV-----FWR*EAVYGLPVETIRRA 320
            +K    P F Q                G    +  ++     FW   + + LP   ++  
Sbjct: 699  TKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWM--SAFRLPSACLKEI 756

Query: 319  EQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWVVSGK 143
              I   FL +G E N+RK   +SWDD C+ K+ GG+ +R + + N  S+LKL+W V S  
Sbjct: 757  NSICSAFLWSGPELNRRK-AKVSWDDICKPKQ-GGLGLRSLTEANVVSVLKLIWRVTSND 814

Query: 142  D-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNFTSVQ 2
            D +WVKW+++  LK++ FWS +P     SW+W+K++K R+  + F+ V+
Sbjct: 815  DSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKKMLKYRETAKPFSRVE 863


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  100 bits (250), Expect = 5e-19
 Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
 Frame = -3

Query: 622 LSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFL----- 458
           +   +E+ + F+ WSGLK+S EKS+IF AG S      +          LP+++L     
Sbjct: 271 IEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLV 330

Query: 457 -------------QQIR----IYSSK-TGF*PSFCQG*AYTLCGIVFWR*EAVYGLPVET 332
                        +QIR     +SS+   F   F    +       FW   + + LP   
Sbjct: 331 TKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWL--SAFQLPRAC 388

Query: 331 IRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWV 155
           I+  E++  +FL +G   N +K   ISW+  C+ K EGG+ +R +K+ N    LKL+W +
Sbjct: 389 IQEIEKLCSSFLWSGTNLNSKK-AKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRI 447

Query: 154 VS-GKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNFTSVQ 2
           +S G  +WVKW     LK++ FW  +   +  SW+W+K++K R   + F   +
Sbjct: 448 ISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAE 500


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score =  100 bits (248), Expect = 9e-19
 Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
 Frame = -3

Query: 394  YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 218
            +++C   FW     + LP E IR  +++  +FL +G + N RK   +SWDD C+ K+EGG
Sbjct: 776  WSICN--FWL--FAFRLPRECIRDIDKLCSSFLWSGQDLNPRK-AKVSWDDVCKPKKEGG 830

Query: 217  IDIRKIKDMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKL 44
            + +R +K+ N    LK++W +VS G  +WVKW     LK + FW  +      SW+WRKL
Sbjct: 831  LGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFVKENTTLGSWMWRKL 890

Query: 43   IKMRDKVRNFTSVQ 2
            IK R+K +NF  V+
Sbjct: 891  IKFREKAKNFCKVE 904


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 28/235 (11%)
 Frame = -3

Query: 622 LSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFL--QQI 449
           +   +++ + F   S LK+S EKS++++AG S      +  +       LPV++L    +
Sbjct: 48  IEGIVDVFDTFAKCSDLKISMEKSTVYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLV 107

Query: 448 RIYSSKTGF*P-------SFCQG*A----------------YTLCGIVFWR*EAVYGLPV 338
               S T + P         C   A                +++C   FW     + LP 
Sbjct: 108 TKQFSSTDYLPLIDHIKQKICSWSARFLSYTGRLNLISSILWSICN--FWM--GAFRLPR 163

Query: 337 ETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLW 161
           + IR  +++   +L +G E N  K   I+W   C+ KEEGG+ +R +K+ N    LKL+W
Sbjct: 164 DCIREIDKMCSAYLWSGGELNTSK-AKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIW 222

Query: 160 WVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNFTSVQ 2
            ++S  D +WVKW +   LKK +FW+ +      SW+WRK++K RD  R    V+
Sbjct: 223 RIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVE 277


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 28/226 (12%)
 Frame = -3

Query: 622 LSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFL--QQI 449
           +   +E+ E F   SGL++S EKS+++ AG S      + A        LPV++L    +
Sbjct: 100 IEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLV 159

Query: 448 RIYSSKTGF*P-----------------------SFCQG*AYTLCGIVFWR*EAVYGLPV 338
               S T + P                       +      +++C   FW     + LP 
Sbjct: 160 TKQLSSTDYLPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICN--FWM--GAFRLPR 215

Query: 337 ETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLW 161
           E IR  +++   +L +G + N  K   I+W D C+ K+EGG+ +R +K+ N  S LKL+W
Sbjct: 216 ECIREIDKMCSAYLWSGGDLNTSK-AKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIW 274

Query: 160 WVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRD 29
            ++S  D +WVKW     LK+  FW+ +      SW+W+K++K RD
Sbjct: 275 RIISHADSLWVKWIHATLLKQVSFWAVRENTSLGSWMWKKVLKFRD 320


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 97.1 bits (240), Expect = 8e-18
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 29/232 (12%)
 Frame = -3

Query: 610  MEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFL--------- 458
            +++L +F +  GLK+  EK+++++AG S      ++++       LPV++L         
Sbjct: 443  VKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRL 502

Query: 457  -------------QQIRIYSSKTGF*PSFCQG*AYTLCGIVFWR*EA----VYGLPVETI 329
                         ++I +++S+     SF      +L   V W         + LP E I
Sbjct: 503  TTSDYSPLIDQIRRRIGMWTSRY---LSFAG--RLSLINSVLWSITNFWMNAFRLPRECI 557

Query: 328  RRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWVV 152
                +I    L +G E N +K   +SWD+ C+ K+EGG+ ++ +++ N  S LKL+W ++
Sbjct: 558  NEINRISSALLWSGPELNPKK-AKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLL 616

Query: 151  SGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNFTSVQ 2
            S +D +WVKW R+  LKK+ FWS        SW+WR+L+K R+  ++F  ++
Sbjct: 617  SCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIE 668


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 87/323 (26%), Positives = 141/323 (43%), Gaps = 46/323 (14%)
 Frame = -3

Query: 844  QFRKWIYQCIGTPSFVVLIY--------LLSSLQLPWRLSPRYLL------S*LVRSQIP 707
            +F  WI QCI TP+F V I             L+    LSP   +      S L+ S+  
Sbjct: 618  KFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYE 677

Query: 706  *FQM*SYEIEPETLC*RLLQFHESI-------SKWLSATMEILEEFTSWSGLKVSSEKSS 548
               +  Y  +   L    L F + +       S  L    E L++F SWSGLKV+ +KS 
Sbjct: 678  -SGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSH 736

Query: 547  IFVAGYSGAMFDAIAAKGGLIRQCLPVKFL------QQIRI-------------YSSKTG 425
            +++AG +    +A AA G  I   LP+++L      +++RI             + S   
Sbjct: 737  LYLAGLNQLESNANAAYGFPIGT-LPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVN 795

Query: 424  F*PSFCQG*AYTLCGIVF-----WR*EAVYGLPVETIRRAEQIMRNFLAGVEQNKRKLVL 260
               SF  G    +  ++F     W   + + LP   I+R E +   FL      + K + 
Sbjct: 796  KCLSFA-GRIQLISSVIFGSINFWM--STFLLPKGCIKRIESLCSRFLWSGNIEQAKGIK 852

Query: 259  ISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSF 83
            +SW   C  K EGG+ +R++ + N    ++L+W +   KD +W  W  L +L +  FW+ 
Sbjct: 853  VSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAV 912

Query: 82   QPPGDASWVWRKLIKMRDKVRNF 14
            +     SW W++L+ +R     F
Sbjct: 913  EGGQSDSWTWKRLLSLRPLAHQF 935


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 95.1 bits (235), Expect = 3e-17
 Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
 Frame = -3

Query: 655  LLQFHESISKWLSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQC 476
            L+ F +   + +   + I +EF   SGL +S EKS++++AG S    + I +        
Sbjct: 280  LMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQ 339

Query: 475  LPVKFL------------------QQIRI-YSSKTGF*PSFCQG*AYTLCGIV----FWR 365
            LPV++L                   ++R   SS T    S+    A     IV    FW 
Sbjct: 340  LPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWM 399

Query: 364  *EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMN 188
              + Y LP   I+  E++   FL +G E N +K   I+W   C+ K+EGG+ I+ + + N
Sbjct: 400  --SAYRLPAGCIKEIEKLCSAFLWSGPELNPKK-AKITWTSLCKLKQEGGLGIKSLLEAN 456

Query: 187  YASILKLLWWVVSGK-DIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNF 14
              S LKL+W +VS +  +WV W     ++K  FWS        SW+W+KL+K RD  ++ 
Sbjct: 457  KVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSM 516

Query: 13   TSVQ 2
              V+
Sbjct: 517  CKVE 520


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 95.1 bits (235), Expect = 3e-17
 Identities = 89/314 (28%), Positives = 143/314 (45%), Gaps = 48/314 (15%)
 Frame = -3

Query: 847  LQFRKWIYQCIGTPSFVV-----LIYLLSS---LQLPWRLSPR-YLLS*LVRSQIP*FQM 695
            ++F  WI  CI T SF V     L+    S   L+    LSP  +++S  V S++     
Sbjct: 150  MEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYLFVMSMDVLSKLLDQAA 209

Query: 694  *SYEIEPETLC*RLLQFHESIS-----------KWLSATMEILEEFTSWSGLKVSSEKSS 548
             + +    + C  L   H S +           + +   +E+ + F  +SGLK+S EKS+
Sbjct: 210  SAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKISMEKST 269

Query: 547  IFVAGYSGAMFDAIAAKGGLIRQCLPVKFLQQIRIYS--SKTGF*P-------------- 416
            I++AG +  ++  I  +       LPV++L    +    + T + P              
Sbjct: 270  IYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKIGTWTT 329

Query: 415  ---------SFCQG*AYTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKL 266
                     +      +++C   FW   A + LP E IR  ++I   FL +G + N RK 
Sbjct: 330  RYLSYAGRLNLITSVLWSICN--FWL--AAFRLPRECIREIDKICSAFLWSGPDLNPRK- 384

Query: 265  VLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFW 89
              + W D C+ K+EGG+ +R +K+MN  S LKL+W +VS    +WV+W     LK D FW
Sbjct: 385  TRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFW 444

Query: 88   SFQPPGDA-SWVWR 50
            S Q   +  S +WR
Sbjct: 445  SVQTTTNMDSVLWR 458


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
 Frame = -3

Query: 373 FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 197
           FW   + + LP   I+  + I  +FL +G E N +K   ++W D C  K+EGG+ IR +K
Sbjct: 80  FWM--SAFRLPSACIKEIDSICSSFLWSGPELNTKK-AKVAWSDVCTPKDEGGLGIRSLK 136

Query: 196 DMNYASILKLLWWVVSGKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVR 20
           + N  S+LKL+W ++S   +WV+W RL  L+K  FWS        SW+W+K++K R    
Sbjct: 137 EANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALAS 196

Query: 19  NF 14
            F
Sbjct: 197 GF 198


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 90.9 bits (224), Expect = 6e-16
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = -3

Query: 373 FWR*EAVYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKD 194
           FW   + + LP   I+  + +   FL    +  RK   +SW+D C  KEEGG+ +R + +
Sbjct: 44  FWM--SAFRLPNACIKEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTE 101

Query: 193 MNYASILKLLWWVVSGKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRN 17
            N    LKL+W ++S   +WV+W R   ++K  FWS +      SW+WRKL+K R     
Sbjct: 102 ANKVCCLKLIWRLLSSSSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASG 161

Query: 16  FTSVQ 2
           FT  +
Sbjct: 162 FTQYE 166


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 26/244 (10%)
 Frame = -3

Query: 655  LLQFHESISKWLSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQC 476
            L+ F +   + +   + I ++F   SGL +S EKS++++A  S    + I +        
Sbjct: 849  LMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQ 908

Query: 475  LPVKFL------------------QQIRI-YSSKTGF*PSFCQG*AYTLCGIV----FWR 365
            LPV++L                   ++R   SS T    S+    A     IV    FW 
Sbjct: 909  LPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWM 968

Query: 364  *EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMN 188
              + Y LP   I+  E++   FL +G E N +K   I+W   C+ K+EGG+ I+ + + N
Sbjct: 969  --SAYRLPAGCIKEIEKLCSAFLWSGPELNPKK-AKITWTSLCKLKQEGGLGIKSLLEAN 1025

Query: 187  YASILKLLWWVVSGK-DIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNF 14
              S LKL+W +VS +  +WV W     ++K  FWS        SW+W+KL+  RD  ++ 
Sbjct: 1026 KVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSM 1085

Query: 13   TSVQ 2
              V+
Sbjct: 1086 CKVE 1089


>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
          Length = 382

 Score = 88.2 bits (217), Expect = 4e-15
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
 Frame = -3

Query: 373 FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 197
           FW   + + LP   I+  E++   FL +G + N  K  L SW D C+ K+EGG+ +R +K
Sbjct: 241 FWL--SAFRLPRGCIKEIEKLCSAFLWSGPDLNPHKAKL-SWVDVCKPKQEGGLGLRPLK 297

Query: 196 DMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKV 23
           ++N    LKL+W +VS    +WV+W     LK D FWS +   +  SW+W KLIK RD  
Sbjct: 298 EINDVCCLKLIWRLVSHANSLWVQWIEKYLLKADTFWSVKATTNRGSWMWSKLIKYRDVA 357

Query: 22  RNFTSVQ 2
           + F  V+
Sbjct: 358 KEFCKVE 364


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 25/232 (10%)
 Frame = -3

Query: 622  LSATMEILEEFTSWSGLKVSSEKSSIFVAGYSGAMFDAIAAKGGLIRQCLPVKFL----- 458
            +   + + +EF   SGL++S EKS+I++AG S +      +        LPV++L     
Sbjct: 1015 IEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLL 1074

Query: 457  -------------QQIRI-YSSKTGF*PSFCQG*AYTLCGIV----FWR*EAVYGLPVET 332
                         + ++   SS T    S+    A     IV    FW   + Y LP   
Sbjct: 1075 TKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWM--SAYRLPAGC 1132

Query: 331  IRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASILKLLWWVV 152
            IR  E++   FL        K   I+W   C+ K+EGG+ I+ + + N  S LKL+W ++
Sbjct: 1133 IREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLL 1192

Query: 151  SGK-DIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRNFTSVQ 2
            S +  +WV W     ++K  FWS        SW+W+KL+K R+  ++   V+
Sbjct: 1193 STQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVE 1244


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
 Frame = -3

Query: 394 YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 218
           +++C   FW     + LP + IR  +++   +L +G E N  K   I+W   C+ KEEGG
Sbjct: 68  WSICN--FWM--GAFRLPRDCIREIDKMCSAYLWSGGELNTSK-AKITWAFVCKPKEEGG 122

Query: 217 IDIRKIKDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKL 44
           + +R +K+ N    LKL+W ++S  D +WVKW +   LKK  FW+ +      SW+WRK+
Sbjct: 123 LGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKI 182

Query: 43  IKMRDKVRNFTSVQ 2
           +K RD  R    V+
Sbjct: 183 LKFRDIARTLCKVE 196