BLASTX nr result
ID: Sinomenium22_contig00022248
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00022248
(482 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 95 9e-18
gb|ABK28243.1| unknown [Arabidopsis thaliana] 95 9e-18
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 95 9e-18
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 94 2e-17
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 91 2e-16
ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp.... 90 4e-16
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 90 4e-16
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 89 5e-16
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 88 1e-15
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 87 3e-15
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 87 3e-15
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 84 2e-14
ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcr... 84 3e-14
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 83 3e-14
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript... 83 3e-14
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 82 6e-14
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 82 6e-14
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 82 1e-13
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 82 1e-13
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 82 1e-13
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 95.1 bits (235), Expect = 9e-18
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 1 KWWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSPLYRF*NEI 162
K+W D W G LI +I L R G+ I+A + + I++ R+P+ I
Sbjct: 23 KFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPI------I 76
Query: 163 ARLDNL-PNS-------HEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFK 309
+L NL P + H+D LW P+ FS W+ + + VPW VWFK
Sbjct: 77 VQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFK 136
Query: 310 NHIPRHAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSNL 480
NH+P+HAF+ W + RL RL G+S + C LC ++ HLFF C FS +
Sbjct: 137 NHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGV 193
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 95.1 bits (235), Expect = 9e-18
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 1 KWWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSPLYRF*NEI 162
K+W D W G LI +I L R G+ I+A + + I++ R+P+ I
Sbjct: 23 KFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPI------I 76
Query: 163 ARLDNL-PNS-------HEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFK 309
+L NL P + H+D LW P+ FS W+ + + VPW VWFK
Sbjct: 77 VQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFK 136
Query: 310 NHIPRHAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSNL 480
NH+P+HAF+ W + RL RL G+S + C LC ++ HLFF C FS +
Sbjct: 137 NHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGV 193
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 95.1 bits (235), Expect = 9e-18
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 1 KWWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSPLYRF*NEI 162
K+W D W G LI +I L R G+ I+A + + I++ R+P+ I
Sbjct: 23 KFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPI------I 76
Query: 163 ARLDNL-PNS-------HEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFK 309
+L NL P + H+D LW P+ FS W+ + + VPW VWFK
Sbjct: 77 VQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFK 136
Query: 310 NHIPRHAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSNL 480
NH+P+HAF+ W + RL RL G+S + C LC ++ HLFF C FS +
Sbjct: 137 NHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGV 193
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 94.4 bits (233), Expect = 2e-17
Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNLSPRSPLYRF*NEIA-RLD-- 174
+W D W G LI + + G++ AT+ N R F N + RL
Sbjct: 205 FWYDDWSDLGRLIDSAGDRGAIDLGINKHATVVEAW-GNRRRRRHRTNFLNRVEERLILS 263
Query: 175 -NLPNSHEDKILWTATPT---VVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVW 342
N N ED+ LW +FSTK WN +R KV W VWF IP+HAF +W
Sbjct: 264 WNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMW 323
Query: 343 RLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
H RL R+ + D+ C LC E+ DHLFF+CPF+
Sbjct: 324 LAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFA 367
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 90.9 bits (224), Expect = 2e-16
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISN----LSPRSPLYRF*NEIARL 171
+W D W P G LI + N R+ V + A ++ V S PRS +
Sbjct: 846 FWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTN 905
Query: 172 DNLPNSHED--KILWTATPTVV--FSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLV 339
++P+ +D W V FS + W+ +R VPW VWFK P+HAF +
Sbjct: 906 ISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHL 965
Query: 340 WRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
W +RLP RL G+ D+ C LC + E DHLF +C F+N
Sbjct: 966 WTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFAN 1011
>ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323307|gb|EFH53728.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 328
Score = 89.7 bits (221), Expect = 4e-16
Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISN----LSPRSP----LYRF*NE 159
WW DPW P G L H + + + G+ + +T+A + I + + RS L+ F +
Sbjct: 100 WW-DPWTPFGSLYHFLGSDGPTHLGISLFSTVAELRIEDGWSLPNARSEKQVLLHSFIST 158
Query: 160 IARLDNLPNSHEDKILWTAT--PTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAF 333
I+ +S D ++W P FS+K+ WN VR KP W VW K IPRH
Sbjct: 159 ISI-----SSSNDTLVWAVDGIPYKHFSSKAVWNAVRISKPVNYWAPLVWHKAAIPRHVI 213
Query: 334 LVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
W R P RL+ G + +C LC + E+ +HLFFNC FS
Sbjct: 214 TSWLFILNRNPTLDRLSSWGYDVELDCLLCGLAHESRNHLFFNCVFS 260
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 89.7 bits (221), Expect = 4e-16
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSPLYRF*NEIA 165
+W D W +G LI L R+ G+ + A + + +S+ R+P IA
Sbjct: 49 FWQDNWTGQGPLIDLTGTNGPRSVGMPLNAVVRDALRGDNWWLSSSRSRNP------SIA 102
Query: 166 RLDN-LPNS-------HEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFKN 312
L + LP+S H+D W P+ +FS W + VPW +VWFK+
Sbjct: 103 LLKSVLPSSESMIECQHDDVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVWFKD 162
Query: 313 HIPRHAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
IP+HAF+ W +RL RL + G++ + C LC V E DHLFF C FSN
Sbjct: 163 RIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSN 217
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 89.4 bits (220), Expect = 5e-16
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSP----LYRF* 153
+W D W G L+HL +G+ + + + + IS+ R+P L R
Sbjct: 881 FWHDNWTDHGPLLHLTGPAGPLLAGLPLNSVVRDALRDDTWRISSSRSRNPVITLLQRVL 940
Query: 154 NEIARLDNLPNSHEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPR 324
A L + P H+D LW P+ FST W+ ++ V W VWFK+H+P+
Sbjct: 941 PSAASLIDCP--HDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAVWFKDHVPK 998
Query: 325 HAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
AF+ W + H RL RL R G S C LC E+ +HLFF C FS+
Sbjct: 999 QAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSS 1049
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 88.2 bits (217), Expect = 1e-15
Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNL----SPRSP----LYRF*NE 159
+W D W P G L+ I + RN + + + +A VV N SPRS L+ F
Sbjct: 221 FWADSWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLLPSPRSSNALNLHAFLTT 280
Query: 160 IARLDNLPNSHEDKILWTAT--PTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAF 333
++ L ED LW + FS+ WN +R K+ + PWV++VWFK P++AF
Sbjct: 281 LSI--PLQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEKPWVSSVWFKGVTPKNAF 338
Query: 334 LVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
+W +RL R+ G C+LC VG E DHL +C FS
Sbjct: 339 NMWITHQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSCDFS 385
>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 746
Score = 86.7 bits (213), Expect = 3e-15
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNLSPR---SPLYRF*NEIARLD 174
+W D W G LI + + + G+ + A++A V+++ R L R + IA +
Sbjct: 183 FWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVR 242
Query: 175 NLP-NSHEDKILWTATPTVV---FSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVW 342
+ S ED + W + F+TK W R+ K KV W VWF + P+++ L W
Sbjct: 243 HQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAW 302
Query: 343 RLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
RL R+ ADS+C LC E DHLFF CP+S
Sbjct: 303 IAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 346
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 86.7 bits (213), Expect = 3e-15
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNLSPR---SPLYRF*NEIARLD 174
+W D W G LI + + + G+ + A++A V+++ R L R + IA +
Sbjct: 211 FWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVR 270
Query: 175 NLP-NSHEDKILWTATPTVV---FSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVW 342
+ S ED + W + F+TK W R+ K KV W VWF + P+++ L W
Sbjct: 271 HQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAW 330
Query: 343 RLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
RL R+ ADS+C LC E DHLFF CP+S
Sbjct: 331 IAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 374
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 84.3 bits (207), Expect = 2e-14
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Frame = +1
Query: 1 KWWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNLSPRSPLYRF*NEIARLDNL 180
K+W D W G LI L+ L + G+ I+A + +
Sbjct: 78 KFWHDNWTGHGPLIDLVGPLGPQTVGLPIDA-------------------------VGLI 112
Query: 181 PNSHEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVWRLF 351
H+D +W P+ +FST + + VPW VWFKNH+P+HAF+ W +
Sbjct: 113 DCQHDDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVA 172
Query: 352 HERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPF 471
RL RL G+S + C LC E+ HLFF CPF
Sbjct: 173 WNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPF 212
>ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|98962153|gb|ABF59406.1| unknown protein [Arabidopsis
thaliana] gi|332004916|gb|AED92299.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 209
Score = 83.6 bits (205), Expect = 3e-14
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSPLYRF*NEIA 165
+W + W G LIHL +L R SG+ A++A + I+ R+P+ +
Sbjct: 37 FWSENWTNLGPLIHLTGDLGPRVSGLPRNASVADALRDGVWWINGSRSRNPIIQLLKNCL 96
Query: 166 RLDNLPN----SHEDKILWT---ATPTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPR 324
L ++ N + +D +W + +V FS+ + W + KV W +WFK IP+
Sbjct: 97 PLSSVVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIHLNPVGEKVDWHKAIWFKGRIPK 156
Query: 325 HAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
HAF+ W RLP +L G+ S C LC E HLFF+C F+
Sbjct: 157 HAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFFDCVFA 206
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 83.2 bits (204), Expect = 3e-14
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Frame = +1
Query: 1 KWWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVV------ISNLSPRSPLYRF*NEI 162
++W D W G LIHL + G+ I + + + I++ R+P+ +
Sbjct: 476 RFWQDNWTGHGPLIHLTGLTGPQLVGLSITSVVRDAIRNDDWWIASSRSRNPVILLLKSL 535
Query: 163 AR-LDNLPN-SHEDKILWTA---TPTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRH 327
+ NL + H+D LW P+ FST W ++ V W VWF N +P+H
Sbjct: 536 LPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKH 595
Query: 328 AFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
AF+ W RL RL G+ + C LC + E DHLFF C FS+
Sbjct: 596 AFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRFSS 645
>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 83.2 bits (204), Expect = 3e-14
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISN-----LSPRSPLYRF*NEIAR 168
+W D W G LI ++ + R+ + + A + + N LS +P + I+
Sbjct: 25 FWHDSWTSLGPLIKVMGDYGSRSLRIPLNARVVEALGVNGWKLPLSRSAPAQAIHDHIST 84
Query: 169 LDN-LPNSHEDKILWTATPTVV--FSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLV 339
+ P + ED W V FS+ W+ +R + P++ W VWFK +P+HAF +
Sbjct: 85 ITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNM 144
Query: 340 WRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
W +RLP RL G +C LC + E+ DHL F+C F+
Sbjct: 145 WISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFA 189
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Frame = +1
Query: 175 NLPNSHEDKILWTATPTV---VFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVWR 345
N+ + D LW +P VFST W P VPW +VWFK IP+HAF+ W
Sbjct: 73 NMLSLESDFFLWRNSPNEPPGVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWV 132
Query: 346 LFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
+ RL RL G++ S C LC E+ HLFF C +S+
Sbjct: 133 VIRNRLTTRDRLRGWGMNVPSECLLCTSSAESRLHLFFECAYSH 176
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 82.4 bits (202), Expect = 6e-14
Identities = 57/171 (33%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLI----PNLIR-RNSGVDIEATLAS--VVISNLSPRSPLYRF*NEI 162
+W D W G L+ + P +R R +EA+ + + S S L+ +
Sbjct: 24 FWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQLF-----L 78
Query: 163 ARLDNLPNSHE----DKILW---TATPTVVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIP 321
A L P HE D LW + FS++ W +R P VPW VWFK +IP
Sbjct: 79 AALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIP 138
Query: 322 RHAFLVWRLFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFS 474
R + + W F ERLP RL G++ S+ LC G E HLFF C FS
Sbjct: 139 RFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFS 189
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNLSPRSP---LYRF*NEIARLD 174
+W D W P G L + + + G+ +AT+A V+ ++ R L + N I +
Sbjct: 179 FWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQIENHIELVR 238
Query: 175 NLPNSHEDKILWTATPTVV---FSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVWR 345
+ D+ LW FS+ W +R + W VWF + P+++F+ W
Sbjct: 239 QARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWL 298
Query: 346 LFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
FH RL RL + A + C C E DHLFF+CP+S+
Sbjct: 299 AFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSS 342
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Frame = +1
Query: 4 WWLDPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISNLSPRSP---LYRF*NEIARLD 174
+W D W P G L + + + G+ +AT+A V+ ++ R L + N I +
Sbjct: 11 FWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQIENHIELVR 70
Query: 175 NLPNSHEDKILWTATPTVV---FSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVWR 345
+ D+ LW FS+ W +R + W VWF + P+++F+ W
Sbjct: 71 QARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWL 130
Query: 346 LFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
FH RL RL + A + C C E DHLFF+CP+S+
Sbjct: 131 AFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSS 174
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 81.6 bits (200), Expect = 1e-13
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Frame = +1
Query: 13 DPWHPEGLLIHLIPNLIRRNSGVDIEATLASVVISN--LSPRSPLYRF*NEIARLDNLP- 183
DPW G L+ + R+ + + ++++ V + + P R +A + +P
Sbjct: 328 DPWTIYGSLLRYVGLTGPRSLRIPLPSSVSQAVAGDSWIFPGVRSDRLQQVLAHISTIPP 387
Query: 184 ---NSHEDKILWTATPT---VVFSTKSAWNLVRQKKPKVPWVNNVWFKNHIPRHAFLVWR 345
+ D LW FS+ WNL R PW + VWF IPRHAFL W+
Sbjct: 388 PSPDGPSDSALWKYKEEDFRPYFSSSRTWNLTRTVHVIAPWSSIVWFPLAIPRHAFLHWQ 447
Query: 346 LFHERLPIAARLNRLGISADSNCSLCWVGRENEDHLFFNCPFSN 477
+ RLP RL + GI++D+ C LC E+ HLFF C +++
Sbjct: 448 VMLFRLPTKDRLQQWGITSDATCRLCDGEDESHQHLFFGCTYAS 491