BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00021264
         (1471 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               342   2e-91
ref|XP_007020666.1| DNA topoisomerase I alpha isoform 3 [Theobro...   311   6e-82
ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobro...   311   6e-82
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]             307   7e-81
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                307   7e-81
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]                  307   9e-81
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 307   9e-81
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g...   306   2e-80
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]                  305   3e-80
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       305   3e-80
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]                 305   3e-80
dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]              304   8e-80
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]                  303   1e-79
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]             302   2e-79
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]               300   8e-79
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   288   4e-75
ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citr...   286   2e-74
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr...   286   2e-74
gb|EXC36325.1| DNA topoisomerase 1 [Morus notabilis]                  285   3e-74
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   279   2e-72

>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  342 bits (878), Expect = 2e-91
 Identities = 209/426 (49%), Positives = 250/426 (58%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV AC+K   + + D+D D P+VFKR+   SK NQL S+    +S ++DG S R V   
Sbjct: 1    MAVQACVKEKMMDEIDED-DEPLVFKRSNATSKHNQLNSDTKK-SSQRYDGQSGRQVSDV 58

Query: 1054 PSANGQSSSSQKGNVAS-----------SANVSTVK-STVANLKVPPEVAEKSKRSTGES 911
            PS NGQSSS+ KG                A+ S  K S VAN KV     ++SK S+ ++
Sbjct: 59   PSTNGQSSSASKGKTTKLSSMKSPIASPKASTSFAKASPVANPKVSSSSDDRSKHSSKQN 118

Query: 910  SKISNMEKKPSVGPGADSE-DSDDDKPLSIRLXXXXXXXXXSPALKGLKXXXXXXXXSER 734
            +     E+K  V P A+   DS+D+KPLS RL         + A KGL            
Sbjct: 119  TINVVKEEKELVNPAAEPYGDSEDEKPLSARLFTGLTKGSSNNANKGLINSSPASLPVP- 177

Query: 733  TKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMV 554
             K  I + S+D +DEIPLSSKFR+K++  +   KS++SD+ K L S F QNGS       
Sbjct: 178  -KPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNGSINRGSKS 236

Query: 553  KPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDD--DDHVPIGQRM 380
              KV NKRPL +V SS QSSVKKPKLS        KQAS K EPK DD  DDHVPI QRM
Sbjct: 237  SIKV-NKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQASKKAEPKADDSDDDHVPISQRM 295

Query: 379  KKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTL 200
            KK A S NKS +                               S+KVPP SGEG+KW+TL
Sbjct: 296  KKSATSGNKSSTAKQKVTKVVSSSMKKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNTL 355

Query: 199  VHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDW 20
            VHNGVIFPP YKPHGVKMLY G+PVDLTPEQEEVATMFAVM DTDY TK KF ENFM+DW
Sbjct: 356  VHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDW 415

Query: 19   RQILGK 2
            R+ILGK
Sbjct: 416  RKILGK 421


>ref|XP_007020666.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
            gi|590606159|ref|XP_007020668.1| DNA topoisomerase I
            alpha isoform 3 [Theobroma cacao]
            gi|508720294|gb|EOY12191.1| DNA topoisomerase I alpha
            isoform 3 [Theobroma cacao] gi|508720296|gb|EOY12193.1|
            DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
          Length = 836

 Score =  311 bits (796), Expect = 6e-82
 Identities = 194/437 (44%), Positives = 241/437 (55%), Gaps = 26/437 (5%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTAS-KQNQLKSEINNLTSSKHDGSSQRHVPG 1058
            MAV+A  K  +  D DDD+DGPVVFKR  T+S KQNQL SE+   +S + DG S R V  
Sbjct: 1    MAVEAPAKHVYDFD-DDDDDGPVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSD 59

Query: 1057 APSANGQSSSSQKGNVASSAN------------VST-------VKSTVANLKVPPEVAEK 935
              S NGQSS++ K    SS+              ST       VKS V N K    + ++
Sbjct: 60   VRSPNGQSSNAPKNKSISSSKSPPVKSPILSPKASTSSTKALPVKSPVVNFKASTSLNDQ 119

Query: 934  SKRSTGESSKISNMEK----KPSVGPGADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLK 767
            SK++  ++   +  E     K +  P +D +D DD  PLS RL             KG  
Sbjct: 120  SKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARLKGISNQGN-----KGAS 174

Query: 766  XXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFL 587
                        K  +K S+ED +DE PLS++F VKS+  +   +  D DE+KPL+S+  
Sbjct: 175  TSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQ 234

Query: 586  QNGSSKNNEMVKPKVLN-KRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDD 410
            QNGS    +      L+ KRPL   NSSD SS KKPK S  P   K KQ +VK E   +D
Sbjct: 235  QNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADED 294

Query: 409  DDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPG 230
            DDH+PI QRMKK  AS++K  SM                              STKVPP 
Sbjct: 295  DDHMPIAQRMKKSTASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPS 354

Query: 229  SGEGQK-WSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATK 53
            SG+GQK WSTLVHNGVIFP  Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDTDY +K
Sbjct: 355  SGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSK 414

Query: 52   PKFIENFMNDWRQILGK 2
             +F +NF  DW ++LGK
Sbjct: 415  TQFKKNFWEDWSKLLGK 431


>ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|590606147|ref|XP_007020665.1| DNA topoisomerase I
            alpha isoform 1 [Theobroma cacao]
            gi|508720292|gb|EOY12189.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao] gi|508720293|gb|EOY12190.1|
            DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
          Length = 904

 Score =  311 bits (796), Expect = 6e-82
 Identities = 194/437 (44%), Positives = 241/437 (55%), Gaps = 26/437 (5%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTAS-KQNQLKSEINNLTSSKHDGSSQRHVPG 1058
            MAV+A  K  +  D DDD+DGPVVFKR  T+S KQNQL SE+   +S + DG S R V  
Sbjct: 1    MAVEAPAKHVYDFD-DDDDDGPVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSD 59

Query: 1057 APSANGQSSSSQKGNVASSAN------------VST-------VKSTVANLKVPPEVAEK 935
              S NGQSS++ K    SS+              ST       VKS V N K    + ++
Sbjct: 60   VRSPNGQSSNAPKNKSISSSKSPPVKSPILSPKASTSSTKALPVKSPVVNFKASTSLNDQ 119

Query: 934  SKRSTGESSKISNMEK----KPSVGPGADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLK 767
            SK++  ++   +  E     K +  P +D +D DD  PLS RL             KG  
Sbjct: 120  SKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARLKGISNQGN-----KGAS 174

Query: 766  XXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFL 587
                        K  +K S+ED +DE PLS++F VKS+  +   +  D DE+KPL+S+  
Sbjct: 175  TSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQ 234

Query: 586  QNGSSKNNEMVKPKVLN-KRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDD 410
            QNGS    +      L+ KRPL   NSSD SS KKPK S  P   K KQ +VK E   +D
Sbjct: 235  QNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADED 294

Query: 409  DDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPG 230
            DDH+PI QRMKK  AS++K  SM                              STKVPP 
Sbjct: 295  DDHMPIAQRMKKSTASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPS 354

Query: 229  SGEGQK-WSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATK 53
            SG+GQK WSTLVHNGVIFP  Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDTDY +K
Sbjct: 355  SGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSK 414

Query: 52   PKFIENFMNDWRQILGK 2
             +F +NF  DW ++LGK
Sbjct: 415  TQFKKNFWEDWSKLLGK 431


>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
          Length = 920

 Score =  307 bits (787), Expect = 7e-81
 Identities = 197/460 (42%), Positives = 248/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTTNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG++SS+QKG +  SA    VKS +                   AN K        +
Sbjct: 60   RPANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPLS R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++   N
Sbjct: 175  --EGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S+++ M K   L NKRP  +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         +VPI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPIT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGK 452


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  307 bits (787), Expect = 7e-81
 Identities = 200/462 (43%), Positives = 248/462 (53%), Gaps = 51/462 (11%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC  PN + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACT-PNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 58

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K        +
Sbjct: 59   RPANGESSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTA 118

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPLS R          + A K     
Sbjct: 119  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANK----- 173

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 174  --EGGDSCSIRRRVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQQN 231

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEP----- 422
            GS S++  M K   L NKRP  +V S +QSSVKKPKLS    +   KQA+VK EP     
Sbjct: 232  GSVSRDGPMNKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAE 291

Query: 421  ----------------------KTDDDDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXX 308
                                  K +DDD+VPI QR+KK  AS +KS + +          
Sbjct: 292  DDDDNIPLSQRGKKSQAATSKPKDEDDDNVPIAQRIKKSPASVSKSSAPVKKASTVVSPS 351

Query: 307  XXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQP 128
                               S+KVPPGSGEGQKW+TLVHNGVIFPP Y PHGVKMLY  QP
Sbjct: 352  LKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQP 411

Query: 127  VDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            + LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGK
Sbjct: 412  ITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGK 453


>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
          Length = 920

 Score =  307 bits (786), Expect = 9e-81
 Identities = 197/460 (42%), Positives = 247/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTTNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV P    ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 175  --EGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S++  M K   L NKR   +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         + PI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPLT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGK 452


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  307 bits (786), Expect = 9e-81
 Identities = 195/453 (43%), Positives = 248/453 (54%), Gaps = 42/453 (9%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC  PN   D D+D D P+VFKR  +ASKQ+Q  SE   ++S K DG S R +  +
Sbjct: 1    MAVEACPTPNLRDDMDED-DEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDS 59

Query: 1054 PSANGQSSSSQKGNV--------------ASSANVSTVKSTVANLKVPPEVAEKS----- 932
              ANG+SSS QKG +              +  +  S VKS +++ KV    A+KS     
Sbjct: 60   RPANGESSSGQKGRMVPPSKPSQVKSPLSSPPSKPSQVKSPLSSPKVSTSSAKKSPVSSL 119

Query: 931  ----KRSTGESSKIS--NMEKKPSVGPGA-------------DSEDSDDDKPLSIRLXXX 809
                K ST  S K+   N  K  +V                 DSEDSDD KPLS+R    
Sbjct: 120  PANSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLR---- 175

Query: 808  XXXXXXSPALKGLKXXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKS 629
                  + + KG          ++ +K   K  +ED +DE PLSS+F +KS       K+
Sbjct: 176  ----HSASSSKG--------NTNQVSKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKA 223

Query: 628  FDSDEEKPLSSRFLQNGSSKNNEMVKP--KVLNKRPLSDVNSSDQSSVKKPKLSYGPVAA 455
            +DSD++KPL+ +   NGS+  +        + NKRP  D+ SS+Q SVKKPKLS      
Sbjct: 224  YDSDDDKPLAKKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPT 283

Query: 454  KVKQASVKGEPKT--DDDDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXX 281
              KQASVK EPK   DDDDH+PI QR+KK   S++KS S+                    
Sbjct: 284  NKKQASVKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKK 343

Query: 280  XXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEE 101
                       +KVPP SGEG+KW+ L HNGVIFPP YKPHG+KMLY G+PVDLTPEQEE
Sbjct: 344  VMKNSKYSKS-SKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEE 402

Query: 100  VATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            VATMFAVM DTDY  KP+F ENF  DW++ILGK
Sbjct: 403  VATMFAVMLDTDYMNKPRFKENFFGDWKKILGK 435


>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
          Length = 920

 Score =  306 bits (784), Expect = 2e-80
 Identities = 196/460 (42%), Positives = 248/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD +GPV+FKR+  ASKQNQ  SE   L+  +H G S  H    
Sbjct: 1    MAVEACTTTNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQRHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG++SS+QKG +  SA    VKS +                   AN K        +
Sbjct: 60   RPANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSAGANSKPSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPLS R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++   N
Sbjct: 175  --EGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S+++ M K   L NKRP  +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         +VPI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPIT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGK 452


>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
          Length = 926

 Score =  305 bits (782), Expect = 3e-80
 Identities = 196/460 (42%), Positives = 246/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTTNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV P    ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 175  --EGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S++  M K   L NKR   +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         + PI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGV+FPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFA M DTDY  KP+F ENF +DW++ILGK
Sbjct: 413  LTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGK 452


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  305 bits (781), Expect = 3e-80
 Identities = 201/460 (43%), Positives = 244/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD  GPV+FKR+K A KQNQ  SE   L+  K DG S  H    
Sbjct: 1    MAVEACTT-NLMEDMEDDG-GPVIFKRSKPAPKQNQANSEKKKLSLQKQDGQSAVHTSDV 58

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K        +
Sbjct: 59   RPANGESSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTA 118

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPLS R          + A K     
Sbjct: 119  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANK----- 173

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 174  --EGGDSCSIRRPVIEESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKKPLAAKVQQN 231

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKT--- 416
            GS S++  M K   L NKRP  +  S +QSSVKKPKLS    +   KQA+VK EPK    
Sbjct: 232  GSASRDGPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPEPKAEDD 291

Query: 415  ----------------------DDDDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
                                  DDDD+VPI QR+KK  AS +KS   +            
Sbjct: 292  DDNIPLSQRGKKSQSATSKPKDDDDDNVPISQRIKKSPASVSKSSVPVKKASTVVSSSLK 351

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY  QP+ 
Sbjct: 352  KVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPIT 411

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY  KP F ENF +DW++ILGK
Sbjct: 412  LTPEQEEVATMFAVMLDTDYMNKPCFKENFFSDWKKILGK 451


>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
          Length = 920

 Score =  305 bits (781), Expect = 3e-80
 Identities = 196/460 (42%), Positives = 246/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC  PN + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTPNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++   N
Sbjct: 175  --EGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQPN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S++  M K   L NKR   +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         + PI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPIT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY  KP+F ENF +DW+++LGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGK 452


>dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
          Length = 920

 Score =  304 bits (778), Expect = 8e-80
 Identities = 196/460 (42%), Positives = 247/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTTNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV P    ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 175  --EGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S++  M K   L NKR   +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         + PI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGV+F P YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFLPPYKPHGVKMLYKQQPLT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY TKP+F ENF +DW+++LGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGK 452


>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
          Length = 926

 Score =  303 bits (777), Expect = 1e-79
 Identities = 196/460 (42%), Positives = 245/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC  PN + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTPNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS DSDE+KPL+++  QN
Sbjct: 175  --EGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSHDSDEKKPLAAKVQQN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S++  M K   L NKR   +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSTITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         + PI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGV+FPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFA M DTDY  KP+F ENF +DW++ILGK
Sbjct: 413  LTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGK 452


>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
          Length = 926

 Score =  302 bits (774), Expect = 2e-79
 Identities = 195/460 (42%), Positives = 247/460 (53%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC  PN + D +DD +GPV+FKR+  ASKQNQ  SE   L+  KH G S  H    
Sbjct: 1    MAVEACTTPNLMEDMEDD-EGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 175  --EGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLATKVQQN 232

Query: 580  GS-SKNNEMVKP-KVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S++  M K   +LNKR   +V S +QSS+KK KLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASRDGPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         + PI QR+KK  AS +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGV+F P YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFLPPYKPHGVKMLYKXQPLT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY TKP+F ENF +DW+++LGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGK 452


>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
          Length = 926

 Score =  300 bits (769), Expect = 8e-79
 Identities = 194/460 (42%), Positives = 242/460 (52%), Gaps = 49/460 (10%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV+AC   N + D +DD +GPV+FKR+   SKQNQ  +E   L+  KH G S  H    
Sbjct: 1    MAVEACTTTNLMEDMEDD-EGPVIFKRSNPTSKQNQANAEKKKLSLQKHVGQSAVHTSDV 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTV-------------------ANLKVPPEVAEKS 932
              ANG+SSS+QKG +  SA    VKS +                   AN K+       +
Sbjct: 60   RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 931  KRSTGESSKISNMEKKPSVGPG---ADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXX 761
            K+     S  + +E KPSV      ++SE SDD+KPL  R          + A K     
Sbjct: 120  KQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSMGKSNHANK----- 174

Query: 760  XXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQN 581
                  S   +  + + SED EDE PLS +F  KSS      KS+DSDE+KPL+++  QN
Sbjct: 175  --EGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQN 232

Query: 580  GS-SKNNEMVKPKVL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDD 407
            GS S    M K   L NKR   +V S +QSS+KKPKLS    +   KQA+VK EPK +DD
Sbjct: 233  GSASPEGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD 292

Query: 406  D-------------------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXX 302
            D                         H PI QR+KK   S +KS + +            
Sbjct: 293  DDNIPLSQRGKKSQTAASKPKDEDDDHAPISQRIKKSPVSVSKSSAPVKKASTVVSTSLK 352

Query: 301  XXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVD 122
                             S+KVPPGSGEGQKW+TLVHNGV+FPP YKPHGVKMLY  QP+ 
Sbjct: 353  KVNKKSKKVIRKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLT 412

Query: 121  LTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            LTPEQEEVATMFAVM DTDY  KP+F ENF +DW++ILGK
Sbjct: 413  LTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKILGK 452


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  288 bits (737), Expect = 4e-75
 Identities = 190/437 (43%), Positives = 235/437 (53%), Gaps = 26/437 (5%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDG--------- 1082
            MAV+A  KP+ + D DDD DGP VFKR   AS+QN    E+   +SS  +G         
Sbjct: 1    MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDK 60

Query: 1081 ---SSQRHVP----------GAPSANGQSSSSQKGNVASSANVSTVKSTVANLKVPPEVA 941
               SS + +P             SA    S S   +   S   S VKS VAN K    + 
Sbjct: 61   TTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLD 120

Query: 940  EKSKRSTGESSK--ISNMEKKPSVGPGADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLK 767
            ++ K+S   ++   +   E K   G  +D  DS+DDKPLS RL             +G+ 
Sbjct: 121  DRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVN-----QGIG 175

Query: 766  XXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFL 587
                    SE   V++K   ED +DE+PLSS+F   ++G S  K   DSDE+KPL+S+  
Sbjct: 176  ASKADAAISE---VNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKP-IDSDEKKPLASKVQ 231

Query: 586  QNGS-SKNNEMVKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDD 410
            QNGS S+  +     V  KRPL   +SS  SS KKPK+S      KVKQ +VK E K DD
Sbjct: 232  QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADD 291

Query: 409  DDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPG 230
            DDH+PI QRMK  A S  KS +                               STK+ PG
Sbjct: 292  DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPG 351

Query: 229  SGEGQK-WSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATK 53
            SG+GQK W+TLVHNGVIFPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY  K
Sbjct: 352  SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 411

Query: 52   PKFIENFMNDWRQILGK 2
            PKF ENF NDWR++LGK
Sbjct: 412  PKFRENFWNDWRKLLGK 428


>ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|557555706|gb|ESR65720.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 824

 Score =  286 bits (731), Expect = 2e-74
 Identities = 190/437 (43%), Positives = 238/437 (54%), Gaps = 26/437 (5%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDG--------- 1082
            MAV+A  KP+ + D DDD DGP VFKR   AS+QN    E+   +SS  +G         
Sbjct: 1    MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDK 60

Query: 1081 ---SSQRHVP---GAPSANGQSSSSQKGNVAS-------SANVSTVKSTVANLKVPPEVA 941
               SS + +P     PS    +SS++   + S       S   S VKS VAN K    + 
Sbjct: 61   TTVSSSKVLPVKSPPPSQKATTSSAKASPLKSPMRSPVKSPVRSPVKSPVANSKESSPLD 120

Query: 940  EKSKRSTGESSK--ISNMEKKPSVGPGADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLK 767
            ++ K+    ++   +   E K   G  +D  DS+DDKPLS RL             +G+ 
Sbjct: 121  DRLKQLPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNTKNVN-----QGIG 175

Query: 766  XXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFL 587
                    SE   V++K   ED +DE+PLSS+F   ++G S  K   DSDE+KPL+S+  
Sbjct: 176  ASKADAAISE---VNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKP-IDSDEKKPLASKVQ 231

Query: 586  QNGS-SKNNEMVKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDD 410
            QNGS S+  +     V  KRPL   +SS  SS KKPK+S      KVKQ +VK E K DD
Sbjct: 232  QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADD 291

Query: 409  DDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPG 230
            DDH+PI QRMK  A S  KS +                               STK+ PG
Sbjct: 292  DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPG 351

Query: 229  SGEGQK-WSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATK 53
            SG+GQK W+TLVHNGVIFPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY  K
Sbjct: 352  SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 411

Query: 52   PKFIENFMNDWRQILGK 2
            PKF ENF NDWR++LGK
Sbjct: 412  PKFRENFWNDWRKLLGK 428


>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|567920950|ref|XP_006452481.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555705|gb|ESR65719.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555707|gb|ESR65721.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 902

 Score =  286 bits (731), Expect = 2e-74
 Identities = 190/437 (43%), Positives = 238/437 (54%), Gaps = 26/437 (5%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDG--------- 1082
            MAV+A  KP+ + D DDD DGP VFKR   AS+QN    E+   +SS  +G         
Sbjct: 1    MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDK 60

Query: 1081 ---SSQRHVP---GAPSANGQSSSSQKGNVAS-------SANVSTVKSTVANLKVPPEVA 941
               SS + +P     PS    +SS++   + S       S   S VKS VAN K    + 
Sbjct: 61   TTVSSSKVLPVKSPPPSQKATTSSAKASPLKSPMRSPVKSPVRSPVKSPVANSKESSPLD 120

Query: 940  EKSKRSTGESSK--ISNMEKKPSVGPGADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLK 767
            ++ K+    ++   +   E K   G  +D  DS+DDKPLS RL             +G+ 
Sbjct: 121  DRLKQLPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNTKNVN-----QGIG 175

Query: 766  XXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFL 587
                    SE   V++K   ED +DE+PLSS+F   ++G S  K   DSDE+KPL+S+  
Sbjct: 176  ASKADAAISE---VNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKP-IDSDEKKPLASKVQ 231

Query: 586  QNGS-SKNNEMVKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDD 410
            QNGS S+  +     V  KRPL   +SS  SS KKPK+S      KVKQ +VK E K DD
Sbjct: 232  QNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADD 291

Query: 409  DDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPG 230
            DDH+PI QRMK  A S  KS +                               STK+ PG
Sbjct: 292  DDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPG 351

Query: 229  SGEGQK-WSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATK 53
            SG+GQK W+TLVHNGVIFPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY  K
Sbjct: 352  SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 411

Query: 52   PKFIENFMNDWRQILGK 2
            PKF ENF NDWR++LGK
Sbjct: 412  PKFRENFWNDWRKLLGK 428


>gb|EXC36325.1| DNA topoisomerase 1 [Morus notabilis]
          Length = 908

 Score =  285 bits (730), Expect = 3e-74
 Identities = 187/439 (42%), Positives = 232/439 (52%), Gaps = 28/439 (6%)
 Frame = -1

Query: 1234 MAVDACIKPNFLGDCDDDNDGPVVFKRTKTASKQNQLKSEINNLTSSKHDGSSQRHVPGA 1055
            MAV A  K +   D D+D DGP++ KR  TASK NQL SE+    S + DG S R +   
Sbjct: 1    MAVQAPAKQSLFDDFDED-DGPLIVKRKNTASKPNQLSSELKKPLSQRLDGQSGRQISDG 59

Query: 1054 PSANGQSSSSQKGNVASSANVSTVKSTVANLKVPPEVAE-------------------KS 932
               NG +S SQKG V  S+  S VKS + + K      +                   + 
Sbjct: 60   VFLNGINSYSQKGKVVQSSKASPVKSPLVSPKASTSSTKAATQKSLVEIRRASTPLDGRP 119

Query: 931  KRSTGESSKISNMEKKPSVGPGADSE------DSDDDKPLSIRLXXXXXXXXXSP--ALK 776
            K S+G++   +  E+K S+     S+      DSDDDKPLS RL             +  
Sbjct: 120  KFSSGQNKYSAVKEEKSSIRQSTTSDIHFEDSDSDDDKPLSARLKGNSNQGDKGTGKSTA 179

Query: 775  GLKXXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSS 596
            G K         +   V  KK S+D +DE PLSSKF+VKS+  +      D D++KPLSS
Sbjct: 180  GDKGPGKHTTGPQLPPVK-KKESQDSDDE-PLSSKFQVKSNAGTSGSNRSDCDDKKPLSS 237

Query: 595  RFLQNGSSKNNEMVKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKT 416
                NGS+  +E     +  KRPL D   SD S VKK KLSY     K KQ SVK E K 
Sbjct: 238  INKLNGSTVKDERKPLDISAKRPL-DKQKSDVSPVKKQKLSYSSSLMKSKQESVKAESKA 296

Query: 415  DDDDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVP 236
            DDDDHVPI QR+KK  AS +K+ +                               STKV 
Sbjct: 297  DDDDHVPISQRIKKSPASTSKASTPKQNIKKYASSSSKKTIKKFKKTVKNSKYSKSTKVS 356

Query: 235  PGSGEGQK-WSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYA 59
            P SG+GQK W+TL HNGVIFPP Y PHGVK+LYNG+PVDLTP QEEVA+MFAVMKDT+Y 
Sbjct: 357  PSSGDGQKKWTTLSHNGVIFPPPYNPHGVKILYNGKPVDLTPAQEEVASMFAVMKDTEYV 416

Query: 58   TKPKFIENFMNDWRQILGK 2
             K  F +NF  DWR++LGK
Sbjct: 417  QKQTFRDNFWTDWRKLLGK 435


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  279 bits (714), Expect = 2e-72
 Identities = 174/414 (42%), Positives = 225/414 (54%), Gaps = 11/414 (2%)
 Frame = -1

Query: 1210 PNFLGDCDDDNDGPVVFKRT-KTASKQNQLKSEINNLTSSKHDGSSQ-----RHVPGAPS 1049
            PN   D DDD+DGP+VFKR   + SKQNQL  E    +SS  + + Q     +     PS
Sbjct: 11   PNNFNDDDDDDDGPIVFKRGGNSTSKQNQLNPEAKKPSSSSQNSNGQSLNLQKGKSPIPS 70

Query: 1048 ANGQSSSSQKGNV---ASSANVSTVKSTVANLKVPPEVAEKSKRSTGESSKISNMEKKPS 878
            +N     S  G+    ASSA  S +KS +   +      ++ K+++ +    +  E+  S
Sbjct: 71   SNASPMKSSTGSPKASASSAKASPLKSPLTYTRALTSSNDQLKQASKQVVSNAVKEETKS 130

Query: 877  VGPGADSEDSDDDKPLSIRLXXXXXXXXXSPALKGLKXXXXXXXXSERTKVSIKKSSEDL 698
            +    D EDS+DDKPLS R+                K               +K    D 
Sbjct: 131  I---VDDEDSEDDKPLSSRI----------------KGSTNNVNKGVTAPAHVKDEPSD- 170

Query: 697  EDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMVKPKVL-NKRPLS 521
            +DE+PLSS+F +KS+  +   KS  S E +P  S+   NGS+KN++  K  V+  KRP+ 
Sbjct: 171  DDEVPLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKRPMD 230

Query: 520  DVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMKKPAASDNKSQSM 341
            +   S+ SS KKPKL       KVKQ +VK E K DDDDH+ I QRMKK  +S NKS   
Sbjct: 231  NKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKKADSSANKSSFA 290

Query: 340  MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTLVHNGVIFPPSYK 164
                                          STKV PGS +GQK W+TLVHNGVIFPP YK
Sbjct: 291  KKKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYK 350

Query: 163  PHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
            PHGVK+LY G+P+DLTPEQEEVATMFAVMKDTDY  KP+F +NF NDWR++LGK
Sbjct: 351  PHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGK 404