BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00020940
         (1616 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007013557.1| SPOC domain / Transcription elongation facto...    48   1e-08
ref|XP_007013558.1| SPOC domain / Transcription elongation facto...    48   1e-08

>ref|XP_007013557.1| SPOC domain / Transcription elongation factor S-II protein,
           putative isoform 1 [Theobroma cacao]
           gi|508783920|gb|EOY31176.1| SPOC domain / Transcription
           elongation factor S-II protein, putative isoform 1
           [Theobroma cacao]
          Length = 573

 Score = 48.1 bits (113), Expect(2) = 1e-08
 Identities = 64/263 (24%), Positives = 101/263 (38%), Gaps = 14/263 (5%)
 Frame = +3

Query: 6   RHRSSLDSVSKKCERKNLPSSEQSPNSHSDNNRLN----------VDVSTQLTQVGDTST 155
           R+    +SV K+ ERK+  S+EQ  +SHS+   L              S  LT + D   
Sbjct: 166 RNHGPSNSVKKELERKHSSSTEQPLSSHSEQKVLGKKNDMACMQPAQESLPLTPIADCIG 225

Query: 156 PFGS*QCKKQGF*RQQYSV*LSSNWSQEHC-Y*YEIAXXXXXXXXXXXXXXXTDTHSNPN 332
              +   + +G   +   + L+ + S       +  +               +  H  P 
Sbjct: 226 IGSAIINRNEGENVESSDIQLALHNSPSSANLLFATSALSNLVGLQTSSFSDSVCHFGPK 285

Query: 333 LKGGMRLEVNAAPVDGSGQEKPTASQEIQRYLLPIRLQNAERQNKPLPDDDDLSEFDIST 512
              G   E   +    S   KP +S  +Q  +L +      +++ P  DDDDL EFD  T
Sbjct: 286 ---GQSSEREMSLTANSESGKPKSSLGLQNPVLSLP-SVITKEHIPAADDDDLPEFDFGT 341

Query: 513 ACGITHSPLGKSACLNNAHVSGTASLEMKPLANGAINIGGLKPCMPNTIQWTTITRHSKS 692
           AC I+ +P  K        V   A      L  G   I G  P + +TIQ  ++   +K 
Sbjct: 342 ACDISQTPRNK--------VLDNAEFHKNVLVEGLKKIVGSLP-LTSTIQ--SLPSSNKR 390

Query: 693 ETPSFPV---LLDTSQGMPPQNK 752
              +FP+     DT   +PP+ K
Sbjct: 391 RAENFPLPEFSFDTILNLPPRKK 413



 Score = 40.0 bits (92), Expect(2) = 1e-08
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
 Frame = +2

Query: 860  IVCCSKNPWDDDD-MPEWCLPDLEQQDQXXXXXXXXXXXXXCPISSSQFNIRQETSSHHL 1036
            IV   KN +DDDD MPEWC P++E   Q              P  S+   +   +  H  
Sbjct: 445  IVAPQKNIFDDDDDMPEWCPPNVELWKQTVLESAKVVTASIHPTLSNS-ELGSPSPGHPS 503

Query: 1037 PVSIHPSLQTLGLPHGHQ------HCSISMTMKPAQ 1126
            P+S   + Q   LP   Q      HC I+ ++KPAQ
Sbjct: 504  PLSSSLAAQ---LPVSTQRSNYASHCPITASVKPAQ 536


>ref|XP_007013558.1| SPOC domain / Transcription elongation factor S-II protein,
           putative isoform 2 [Theobroma cacao]
           gi|508783921|gb|EOY31177.1| SPOC domain / Transcription
           elongation factor S-II protein, putative isoform 2
           [Theobroma cacao]
          Length = 426

 Score = 48.1 bits (113), Expect(2) = 1e-08
 Identities = 64/263 (24%), Positives = 101/263 (38%), Gaps = 14/263 (5%)
 Frame = +3

Query: 6   RHRSSLDSVSKKCERKNLPSSEQSPNSHSDNNRLN----------VDVSTQLTQVGDTST 155
           R+    +SV K+ ERK+  S+EQ  +SHS+   L              S  LT + D   
Sbjct: 19  RNHGPSNSVKKELERKHSSSTEQPLSSHSEQKVLGKKNDMACMQPAQESLPLTPIADCIG 78

Query: 156 PFGS*QCKKQGF*RQQYSV*LSSNWSQEHC-Y*YEIAXXXXXXXXXXXXXXXTDTHSNPN 332
              +   + +G   +   + L+ + S       +  +               +  H  P 
Sbjct: 79  IGSAIINRNEGENVESSDIQLALHNSPSSANLLFATSALSNLVGLQTSSFSDSVCHFGPK 138

Query: 333 LKGGMRLEVNAAPVDGSGQEKPTASQEIQRYLLPIRLQNAERQNKPLPDDDDLSEFDIST 512
              G   E   +    S   KP +S  +Q  +L +      +++ P  DDDDL EFD  T
Sbjct: 139 ---GQSSEREMSLTANSESGKPKSSLGLQNPVLSLP-SVITKEHIPAADDDDLPEFDFGT 194

Query: 513 ACGITHSPLGKSACLNNAHVSGTASLEMKPLANGAINIGGLKPCMPNTIQWTTITRHSKS 692
           AC I+ +P  K        V   A      L  G   I G  P + +TIQ  ++   +K 
Sbjct: 195 ACDISQTPRNK--------VLDNAEFHKNVLVEGLKKIVGSLP-LTSTIQ--SLPSSNKR 243

Query: 693 ETPSFPV---LLDTSQGMPPQNK 752
              +FP+     DT   +PP+ K
Sbjct: 244 RAENFPLPEFSFDTILNLPPRKK 266



 Score = 40.0 bits (92), Expect(2) = 1e-08
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
 Frame = +2

Query: 860  IVCCSKNPWDDDD-MPEWCLPDLEQQDQXXXXXXXXXXXXXCPISSSQFNIRQETSSHHL 1036
            IV   KN +DDDD MPEWC P++E   Q              P  S+   +   +  H  
Sbjct: 298  IVAPQKNIFDDDDDMPEWCPPNVELWKQTVLESAKVVTASIHPTLSNS-ELGSPSPGHPS 356

Query: 1037 PVSIHPSLQTLGLPHGHQ------HCSISMTMKPAQ 1126
            P+S   + Q   LP   Q      HC I+ ++KPAQ
Sbjct: 357  PLSSSLAAQ---LPVSTQRSNYASHCPITASVKPAQ 389