BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00019662
         (1286 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   493   e-137
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              493   e-137
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   474   e-131
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   471   e-130
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   471   e-130
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   471   e-130
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   471   e-130
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   468   e-129
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   466   e-128
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   457   e-126
ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF,...   456   e-125
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   456   e-125
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   451   e-124
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   451   e-124
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   451   e-124
ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phas...   449   e-123
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   448   e-123
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   447   e-123
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   446   e-123
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   444   e-122

>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  493 bits (1269), Expect = e-137
 Identities = 241/342 (70%), Positives = 290/342 (84%), Gaps = 1/342 (0%)
 Frame = +3

Query: 72   PKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTR 251
            PK  VHE    R+A++QRKIN G+D  DPLRLFL G ETR+LL+AKEE EL VQI+ L R
Sbjct: 231  PKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMR 290

Query: 252  LEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQ 431
            LEEVK RLQS   REPT+VEWAEA+G+SC +LQS LH G+RSR+K+  AN R+VVH+AKQ
Sbjct: 291  LEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQ 350

Query: 432  YQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLP 611
            YQGRGLNLQDL+QEGSMGLM S+EKFKP  GCRF++YAYWWIRQ++RKAIFQ+SRTIRLP
Sbjct: 351  YQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLP 410

Query: 612  ENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWL 788
            EN+YSLL +VK AK L+IQEGHH PT EE+A RVGI++EKL+ LL  TRMPLSMQQPVW 
Sbjct: 411  ENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWA 470

Query: 789  DQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSL 968
            DQ+TTFQE+TAD+ +EIP++ V K+LMR+HVRNLL +L PKERRIIRLRFGI DG P++L
Sbjct: 471  DQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTL 530

Query: 969  SQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            S+IG VFG +KERVRQLE RAL KL++CLS+ GL +Y +LL+
Sbjct: 531  SEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  493 bits (1269), Expect = e-137
 Identities = 241/342 (70%), Positives = 290/342 (84%), Gaps = 1/342 (0%)
 Frame = +3

Query: 72   PKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTR 251
            PK  VHE    R+A++QRKIN G+D  DPLRLFL G ETR+LL+AKEE EL VQI+ L R
Sbjct: 220  PKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMR 279

Query: 252  LEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQ 431
            LEEVK RLQS   REPT+VEWAEA+G+SC +LQS LH G+RSR+K+  AN R+VVH+AKQ
Sbjct: 280  LEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQ 339

Query: 432  YQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLP 611
            YQGRGLNLQDL+QEGSMGLM S+EKFKP  GCRF++YAYWWIRQ++RKAIFQ+SRTIRLP
Sbjct: 340  YQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLP 399

Query: 612  ENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWL 788
            EN+YSLL +VK AK L+IQEGHH PT EE+A RVGI++EKL+ LL  TRMPLSMQQPVW 
Sbjct: 400  ENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWA 459

Query: 789  DQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSL 968
            DQ+TTFQE+TAD+ +EIP++ V K+LMR+HVRNLL +L PKERRIIRLRFGI DG P++L
Sbjct: 460  DQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTL 519

Query: 969  SQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            S+IG VFG +KERVRQLE RAL KL++CLS+ GL +Y +LL+
Sbjct: 520  SEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  474 bits (1219), Expect = e-131
 Identities = 238/344 (69%), Positives = 289/344 (84%), Gaps = 1/344 (0%)
 Frame = +3

Query: 66   PKPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKAL 245
            PK K I HE+ S   +D+++KI+ GF+ +DPLRLFL G ETRQLL+AKEE EL  +++ L
Sbjct: 225  PKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDL 284

Query: 246  TRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVA 425
             +LEEVK RLQ+QF REPTL+EWAEA+G+SC IL+S L  G  SREK+  AN R+VVH+A
Sbjct: 285  FKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIA 344

Query: 426  KQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIR 605
            KQYQGRGL LQDLMQEGSMGLMKS+EKFKPQ GCRF+TYAYWWIRQ++RKAIFQ+SRTIR
Sbjct: 345  KQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIR 404

Query: 606  LPENVYSLLRQVKNAKNLYIQEG-HHPTNEELANRVGISVEKLESLLFSTRMPLSMQQPV 782
            LPENVYSLL +V  AK   IQEG H+P  EELA RVGI+VEKLE LL++TRMPLSMQQPV
Sbjct: 405  LPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPV 464

Query: 783  WLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPK 962
            W DQ+TTFQE+TAD+ VEIP++ V K+LMR+HVR+LLSIL  +ER IIRLR+GIEDG+ +
Sbjct: 465  WADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQR 524

Query: 963  SLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            SLS+IG +FG++KERVRQLESRA  KLR+ L ++GLGAY  LL+
Sbjct: 525  SLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  471 bits (1211), Expect = e-130
 Identities = 234/343 (68%), Positives = 289/343 (84%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            KPK   HE  + RKA +++K++ GFD++DPLRLFL G ETR+LL+A EE EL  QI+ L 
Sbjct: 219  KPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 278

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+ K +LQSQF REPTL+EWA+AIG+SC  L+S LH G+ SREK+  AN RLVVHVAK
Sbjct: 279  RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 338

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRG+ L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRL
Sbjct: 339  QYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 398

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PEN+Y+LL +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW
Sbjct: 399  PENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 458

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ+TTFQEITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKS
Sbjct: 459  ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 518

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS++G++FG++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 519  LSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  471 bits (1211), Expect = e-130
 Identities = 234/343 (68%), Positives = 289/343 (84%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            KPK   HE  + RKA +++K++ GFD++DPLRLFL G ETR+LL+A EE EL  QI+ L 
Sbjct: 227  KPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+ K +LQSQF REPTL+EWA+AIG+SC  L+S LH G+ SREK+  AN RLVVHVAK
Sbjct: 287  RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRG+ L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRL
Sbjct: 347  QYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PEN+Y+LL +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW
Sbjct: 407  PENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 466

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ+TTFQEITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKS
Sbjct: 467  ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 526

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS++G++FG++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 527  LSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  471 bits (1211), Expect = e-130
 Identities = 234/343 (68%), Positives = 289/343 (84%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            KPK   HE  + RKA +++K++ GFD++DPLRLFL G ETR+LL+A EE EL  QI+ L 
Sbjct: 228  KPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 287

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+ K +LQSQF REPTL+EWA+AIG+SC  L+S LH G+ SREK+  AN RLVVHVAK
Sbjct: 288  RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 347

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRG+ L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRL
Sbjct: 348  QYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 407

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PEN+Y+LL +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW
Sbjct: 408  PENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 467

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ+TTFQEITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKS
Sbjct: 468  ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 527

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS++G++FG++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 528  LSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  471 bits (1211), Expect = e-130
 Identities = 237/343 (69%), Positives = 285/343 (83%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            K K I HE  S R+A +Q+KIN GFD  DPLRLFL G ET+QLL+AKEE EL  Q++ L 
Sbjct: 206  KTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLM 265

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
             LE VK + + QF R+PTLVEWA+A+G+S  ++QS LH G+RSREK+  AN R+VVH+AK
Sbjct: 266  SLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAK 325

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRGL+LQDL+QEGSMGLMKSIEKFKPQVGCRF+TYAYWWIRQ++RKAIFQ+SRTIRL
Sbjct: 326  QYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRL 385

Query: 609  PENVYSLLRQVKNAKNLYIQEG-HHPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PENVY  L +V  AK  YI EG H+PT EELA R+GI+  +LE LL+  RMPLSMQQ VW
Sbjct: 386  PENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVW 445

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ TTFQEITAD EVEIPEL V K+LMR+HV +LL+IL P+ER+IIRLR+GIEDG+ KS
Sbjct: 446  ADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKS 505

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS+IGSVFG++KERVRQLESRAL KL++CL++ GL AYA+LL+
Sbjct: 506  LSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  468 bits (1203), Expect = e-129
 Identities = 233/343 (67%), Positives = 286/343 (83%), Gaps = 1/343 (0%)
 Frame = +3

Query: 66   PKPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKAL 245
            PK K ++ E    + AD+Q++++ GFD +DPLRLFL G ET+QLL+AKEE EL  QI+ L
Sbjct: 192  PKTKDLIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDL 251

Query: 246  TRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVA 425
              LE VK RL+SQF REPTLVEWA+A+G+SC +L+  LH G+RSREK+  AN R+VVH+A
Sbjct: 252  MNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIA 311

Query: 426  KQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIR 605
            K+YQ RGL LQDL+QEG++GLMKSIEKFKPQ GCRF+TYAYWWIRQ+I KAIFQ+SRTIR
Sbjct: 312  KRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIR 371

Query: 606  LPENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPV 782
            LPENVY LL +V  AK  YIQEG+H PT EE+A RVGI+++KLE LL  TR PLSMQQ V
Sbjct: 372  LPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTV 431

Query: 783  WLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPK 962
            W DQNTTFQEITAD+E+EIP++ V K+LMR+H+R LL+IL  KERRIIRLRFGIEDG+ K
Sbjct: 432  WSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQK 491

Query: 963  SLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELL 1091
            SLS+IG+VFG++KERVRQLESRAL KL++C+ + GL AYA+LL
Sbjct: 492  SLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  466 bits (1198), Expect = e-128
 Identities = 227/343 (66%), Positives = 291/343 (84%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            +PK  + E  S R+ D++RK++ GFD +DPLRLFL G ET+QLL+AKEE EL  Q++ L 
Sbjct: 226  QPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLM 285

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+VK +LQSQF REPTLVEWAEAIG+ C  LQ+ LH G+ SR+K+  AN R+VVH+AK
Sbjct: 286  RLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAK 345

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQ RGL+LQDL+QEGSMGLMKS+E+FKPQVGCRF+TYAYWWIRQ+IRK+I Q+SRT+RL
Sbjct: 346  QYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRL 405

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PENV++LL +V +AK  YI+EG+H P+ EELA RVGI+VEKL+ LLF+TRMPLSMQQ VW
Sbjct: 406  PENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVW 465

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
            +DQ+ TFQE+T D+ +EIP++ V K+LMR+HVRNLLS+L P+ER II+LRFGIE+ +  S
Sbjct: 466  VDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENS 525

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS+IG++FG++KERVRQLESRAL KL++CL+  GLGAY +LL+
Sbjct: 526  LSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  457 bits (1176), Expect = e-126
 Identities = 227/349 (65%), Positives = 286/349 (81%), Gaps = 7/349 (2%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINV------GFDQSDPLRLFLSGSETRQLLSAKEERELFV 230
            K K +  E+   RK+D+QR++ +      G+D +DPLRLFLSG E+RQLL+ +EE +L  
Sbjct: 206  KSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRLFLSGPESRQLLTREEESQLIT 265

Query: 231  QIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRL 410
            Q++ L+RLEEVK+RLQ+Q  REPTL EWA+A+G SC+ LQ+ LH  +RS+EK+  AN R+
Sbjct: 266  QLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYALQTQLHCANRSKEKLFHANLRM 325

Query: 411  VVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQN 590
            VVH+AK YQGRGL+LQDL QEGS GLMKSIEKFKP+ GCRF TYAYWWIR ++RKAIF +
Sbjct: 326  VVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLH 385

Query: 591  SRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLS 767
            SRTIRLPEN+Y+LL +V  AK  YIQEG+ HPT EELA +VGI++EK+++LLF++R P+S
Sbjct: 386  SRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPIS 445

Query: 768  MQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIE 947
            MQQ VW DQ+TTFQEITADS +EIP++ V+K+LMR HV NLL+IL PKER IIRLRFGIE
Sbjct: 446  MQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIE 505

Query: 948  DGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            DGE K+LS IG VFG+TKERVRQLESRAL KLR+CL ++GL AY +LL+
Sbjct: 506  DGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQGLDAYTDLLV 554


>ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Glycine max]
          Length = 477

 Score =  456 bits (1173), Expect = e-125
 Identities = 227/349 (65%), Positives = 286/349 (81%), Gaps = 7/349 (2%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINV------GFDQSDPLRLFLSGSETRQLLSAKEERELFV 230
            K K I  E+   RK+D+QR++ +      G+DQ+DPLRLFLSG E+RQLL+ +EE  L  
Sbjct: 129  KSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRLFLSGPESRQLLTREEESLLIT 188

Query: 231  QIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRL 410
            Q++ L+R EEVK+RLQSQ  REPTL EWA+A+G+SC+ LQ+ LH  +RS+EK+  AN R+
Sbjct: 189  QLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRM 248

Query: 411  VVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQN 590
            VVH+AK YQGRGL+LQDL QEGS GLMKSI+KFKP+ GCRF TYAYWWIR +IRKAIF +
Sbjct: 249  VVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLH 308

Query: 591  SRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLS 767
            SRTIRLPEN+Y+LL ++  AK  YIQEG+ HPT EELA RVGI+VEKL++LLF++R P+S
Sbjct: 309  SRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELARRVGITVEKLDNLLFASRNPIS 368

Query: 768  MQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIE 947
            MQQ +W+DQ+TTFQEITADS +EIP + V+K+LMRRHV NLL+IL PKE+ IIRLRFGIE
Sbjct: 369  MQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIE 428

Query: 948  DGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            DG+ K+LS IG VFG+TKERVRQLE RAL KL++CL ++GL AY +LL+
Sbjct: 429  DGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQGLDAYIDLLV 477


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  456 bits (1173), Expect = e-125
 Identities = 227/349 (65%), Positives = 286/349 (81%), Gaps = 7/349 (2%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINV------GFDQSDPLRLFLSGSETRQLLSAKEERELFV 230
            K K I  E+   RK+D+QR++ +      G+DQ+DPLRLFLSG E+RQLL+ +EE  L  
Sbjct: 206  KSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRLFLSGPESRQLLTREEESLLIT 265

Query: 231  QIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRL 410
            Q++ L+R EEVK+RLQSQ  REPTL EWA+A+G+SC+ LQ+ LH  +RS+EK+  AN R+
Sbjct: 266  QLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRM 325

Query: 411  VVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQN 590
            VVH+AK YQGRGL+LQDL QEGS GLMKSI+KFKP+ GCRF TYAYWWIR +IRKAIF +
Sbjct: 326  VVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLH 385

Query: 591  SRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLS 767
            SRTIRLPEN+Y+LL ++  AK  YIQEG+ HPT EELA RVGI+VEKL++LLF++R P+S
Sbjct: 386  SRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELARRVGITVEKLDNLLFASRNPIS 445

Query: 768  MQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIE 947
            MQQ +W+DQ+TTFQEITADS +EIP + V+K+LMRRHV NLL+IL PKE+ IIRLRFGIE
Sbjct: 446  MQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIE 505

Query: 948  DGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            DG+ K+LS IG VFG+TKERVRQLE RAL KL++CL ++GL AY +LL+
Sbjct: 506  DGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQGLDAYIDLLV 554


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  451 bits (1161), Expect = e-124
 Identities = 228/343 (66%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            KPK   HE  + RKA +++K++ GFD +DPLRLFL G ETR+LL+A EE EL  QI+ L 
Sbjct: 219  KPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 278

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+ K +LQSQF REPTL+       +SC  L+S LH G+ SREK+  AN RLVVHVAK
Sbjct: 279  RLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 338

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRG+ L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRL
Sbjct: 339  QYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 398

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PEN+Y+LL +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW
Sbjct: 399  PENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 458

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ+TTFQEITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKS
Sbjct: 459  ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 518

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS++G++FG++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 519  LSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  451 bits (1161), Expect = e-124
 Identities = 228/343 (66%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            KPK   HE  + RKA +++K++ GFD +DPLRLFL G ETR+LL+A EE EL  QI+ L 
Sbjct: 227  KPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+ K +LQSQF REPTL+       +SC  L+S LH G+ SREK+  AN RLVVHVAK
Sbjct: 287  RLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRG+ L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRL
Sbjct: 347  QYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PEN+Y+LL +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW
Sbjct: 407  PENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 466

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ+TTFQEITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKS
Sbjct: 467  ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 526

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS++G++FG++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 527  LSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  451 bits (1161), Expect = e-124
 Identities = 228/343 (66%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
 Frame = +3

Query: 69   KPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALT 248
            KPK   HE  + RKA +++K++ GFD +DPLRLFL G ETR+LL+A EE EL  QI+ L 
Sbjct: 216  KPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 275

Query: 249  RLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAK 428
            RLE+ K +LQSQF REPTL+       +SC  L+S LH G+ SREK+  AN RLVVHVAK
Sbjct: 276  RLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 335

Query: 429  QYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRL 608
            QYQGRG+ L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRL
Sbjct: 336  QYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 395

Query: 609  PENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVW 785
            PEN+Y+LL +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW
Sbjct: 396  PENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 455

Query: 786  LDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKS 965
             DQ+TTFQEITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKS
Sbjct: 456  ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 515

Query: 966  LSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            LS++G++FG++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 516  LSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phaseolus vulgaris]
            gi|561036230|gb|ESW34760.1| hypothetical protein
            PHAVU_001G178600g [Phaseolus vulgaris]
          Length = 550

 Score =  449 bits (1154), Expect = e-123
 Identities = 219/331 (66%), Positives = 276/331 (83%), Gaps = 1/331 (0%)
 Frame = +3

Query: 105  RKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQ 284
            RK  +++K+N GFDQ+DPLR+FLS  E+RQLL+ +EE +L  Q++ L+RLEEVK+RLQSQ
Sbjct: 220  RKLRLEKKLNEGFDQNDPLRMFLSDPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQ 279

Query: 285  FNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDL 464
              REPTL EWA+ +G+SC  LQ+ LH  +RS+EK+  AN R+VVH+AK YQGRGLNLQDL
Sbjct: 280  IRREPTLAEWADVLGLSCCALQTQLHCANRSKEKLFHANMRMVVHIAKYYQGRGLNLQDL 339

Query: 465  MQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 644
            +QEGS GL+KSI+KFKP  GCRF TYAYWWIR SIR+AIF +SRTIR+PEN+Y LL +V 
Sbjct: 340  LQEGSTGLLKSIDKFKPGGGCRFGTYAYWWIRHSIRRAIFLHSRTIRVPENLYRLLGKVL 399

Query: 645  NAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITA 821
             AK  +IQEG+ HP+ EELA RVGI+V+KLE+LLF++R P+SMQQ VW DQ TTFQEITA
Sbjct: 400  EAKKSFIQEGNIHPSKEELARRVGITVDKLENLLFTSRNPISMQQSVWADQETTFQEITA 459

Query: 822  DSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITK 1001
            DS +EIP++ V+K+LMRRHV NLL++L PKE+ I+RLRFGIEDG+ K+LS IG VFG+TK
Sbjct: 460  DSAIEIPDVCVSKQLMRRHVHNLLNMLSPKEKSILRLRFGIEDGKEKTLSDIGKVFGLTK 519

Query: 1002 ERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            ERVRQLESRAL KL+ CL ++GL +Y +LLI
Sbjct: 520  ERVRQLESRALSKLKDCLESQGLDSYIDLLI 550


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  448 bits (1152), Expect = e-123
 Identities = 222/343 (64%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
 Frame = +3

Query: 66   PKPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKAL 245
            PK    + E  + R  D +RK +  FD +DPLRLFL G ET++LL+A+EE EL VQI+ L
Sbjct: 219  PKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDL 278

Query: 246  TRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVA 425
              L+ VK RLQSQF+REPTLVEWAEA+G++C  LQS LH+   SREK+  AN R+VVH+A
Sbjct: 279  MILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIA 338

Query: 426  KQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIR 605
            KQYQGRGL+L DL+Q GS+GLMKS+EKFKPQ GCRF +YAYWWIR SI KAIFQ+SRTIR
Sbjct: 339  KQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIR 398

Query: 606  LPENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPV 782
            LPENVY+LL +V  AKN +++ G++ P+ EELA RVGI+VE+ + L+F +R+P S+QQPV
Sbjct: 399  LPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPV 458

Query: 783  WLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPK 962
            W DQ TTFQEITADSEV+ P++ V ++LMRRH+RNLLSIL PKERRIIRLRFGIEDG  K
Sbjct: 459  WADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREK 518

Query: 963  SLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELL 1091
            +L +IG++FG++KERVRQLE+RAL KL++C +++GLGAYA+LL
Sbjct: 519  TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 561


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  447 bits (1151), Expect = e-123
 Identities = 222/337 (65%), Positives = 278/337 (82%), Gaps = 1/337 (0%)
 Frame = +3

Query: 87   HEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVK 266
            +E  S   +D++RK   G + +DPLRLFL G ETRQLL+ KEE EL  +++ + +LE VK
Sbjct: 218  YENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVK 277

Query: 267  VRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRG 446
             RLQSQF REPTL+EWAEA+G+SC +LQS L  G  SREK+  +N R+VVH+AKQYQGRG
Sbjct: 278  SRLQSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRG 337

Query: 447  LNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYS 626
            L LQDL+QEGSMGLMKS+EKFKPQ GCRF+TYAYWW+RQ+IRKAIFQ+SRTIRLPENVY+
Sbjct: 338  LGLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYT 397

Query: 627  LLRQVKNAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTT 803
            LL +V  AK  YIQEG+ +P+ EELA RVG+SVEKL  LL+ TRMP+SMQQ VW DQ+TT
Sbjct: 398  LLGKVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTT 457

Query: 804  FQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGS 983
            FQE+TAD+ +EIP+L V K+LMR+HVRNLL  L  +ER+IIRLR+GIEDG+ +SL++IG 
Sbjct: 458  FQEVTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGE 517

Query: 984  VFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            +FG++KERVRQLESRA  KL++ L ++GLGAYA LL+
Sbjct: 518  IFGLSKERVRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  446 bits (1148), Expect = e-123
 Identities = 221/344 (64%), Positives = 285/344 (82%), Gaps = 1/344 (0%)
 Frame = +3

Query: 66   PKPKAIVHEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKAL 245
            PKP+    E    RK +  +K + G+D +DPLRLFL G ET QLLSAKEE +L  +I+ L
Sbjct: 216  PKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQEL 275

Query: 246  TRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVA 425
             +L+EV+ RLQ+QF+REPTLVEWA A+G+S   LQ  ++ G+ SREK+  ANFRLVV++A
Sbjct: 276  MKLQEVRSRLQTQFSREPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIA 335

Query: 426  KQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIR 605
            KQYQGRGLNLQDL+Q GSMGLMKS+EKFKP VGCRF+TYAYWWIRQSIRK++FQ+SRTIR
Sbjct: 336  KQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIR 395

Query: 606  LPENVYSLLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPV 782
            LPENVY+LL +V  AK   I++G+H PT E++A   G+SVEKL+ LL+++R+PLSMQ+PV
Sbjct: 396  LPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPV 455

Query: 783  WLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPK 962
            W+DQ+TTFQEITAD+ VE P++  +K++MR+H RNLLS+L P+ER+IIRLRFGIEDGE K
Sbjct: 456  WMDQDTTFQEITADTAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQK 515

Query: 963  SLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            SLS IG+ FG++KER+RQ+ESRAL KL++CLS+ GL AYAE+L+
Sbjct: 516  SLSDIGAGFGLSKERIRQIESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  444 bits (1142), Expect = e-122
 Identities = 227/350 (64%), Positives = 272/350 (77%), Gaps = 7/350 (2%)
 Frame = +3

Query: 66   PKPKAIVHEAPSLRKADIQRKI------NVGFDQSDPLRLFLSGSETRQLLSAKEERELF 227
            PK K I  E    RK D Q K+      N   DQ DPLRLFL G ET+QLL+ ++E +L 
Sbjct: 226  PKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLI 285

Query: 228  VQIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFR 407
             QI+ L RLEEVK  LQSQF REPT+ EWAE  G++C +LQS LH G+RSREK+  AN R
Sbjct: 286  SQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLR 345

Query: 408  LVVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQ 587
            +VVHVAK YQGRGL+LQDL+QEGSMGLMKS+EKF P  G RF  YA+WWIRQ+IRKA+F+
Sbjct: 346  MVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFR 405

Query: 588  NSRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPL 764
            +SRTIRLPE V+ LL +V  AK LYIQEG+ HPT EELA RVG++VEK++ LLFS R+P+
Sbjct: 406  HSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPI 465

Query: 765  SMQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGI 944
            SMQQ VW DQNTTFQEITAD  VE  ++ V K+LMRRHV N+LS+L PKERRIIRLR+G 
Sbjct: 466  SMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGF 525

Query: 945  EDGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1094
            EDGE KSLS+IG +FG++KERVRQLE RAL KL+KCL  +GL AY +LL+
Sbjct: 526  EDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575