BLASTX nr result
ID: Sinomenium22_contig00018664
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00018664
(947 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera] 474 e-131
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 471 e-130
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 467 e-129
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 467 e-129
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 464 e-128
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 452 e-125
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 451 e-124
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 449 e-124
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 449 e-123
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 448 e-123
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 447 e-123
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] 447 e-123
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 442 e-121
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 441 e-121
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola... 441 e-121
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 441 e-121
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 440 e-121
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 439 e-121
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 439 e-121
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu... 439 e-121
>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 474 bits (1221), Expect = e-131
Identities = 235/315 (74%), Positives = 258/315 (81%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
EI +G YVFSDGIGKISAE AHRVA KC KSS PSAFQIRY GYKGVVAVDPTS +
Sbjct: 58 EIHRDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRK 117
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S+N LDVL+WSK++PCFLNRQLITLLSTLGVKDH+FEKKQ+EAVDQL+
Sbjct: 118 LSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLD 177
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL DPL A+E LE+MSPGE+ N+LKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KT
Sbjct: 178 TILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 237
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+PNGRSMMGCLDETRTL YG+VFVQ+S G +Q G L + S F+++GK
Sbjct: 238 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFYGSGSHHDNFILEGK 296
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGDVR+L AVDVP LHHMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV W
Sbjct: 297 VVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCW 356
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 357 DHDLIPPRQINPMDY 371
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 471 bits (1213), Expect = e-130
Identities = 233/315 (73%), Positives = 257/315 (81%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
E +G YVFSDGIGKISAE AHRVA KC K+S PSAFQIRY GYKGVVAVDPTS +
Sbjct: 514 ETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRK 573
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S+N LDVL+WSK++PCFLNRQLITLLSTLGVKDH+FEKKQ+EAVDQL+
Sbjct: 574 LSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLD 633
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL DPL A+E LE+MSPGE+ N+LKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KT
Sbjct: 634 TILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 693
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+PNGRSMMGCLDETRTL YG+VFVQ+S G +Q G L + S F+++GK
Sbjct: 694 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFYGSGSHHDNFILEGK 752
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGDVR+L AVDVP LHHMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV W
Sbjct: 753 VVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCW 812
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 813 DHDLIPPRQINPMDY 827
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 467 bits (1202), Expect = e-129
Identities = 233/315 (73%), Positives = 254/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
EI YVFSDGIGKIS + AHRVA KC KSS PSAFQIRY GYKGVVAVDPTS +
Sbjct: 516 EIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRK 575
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N LDVL WSK+QP FLNRQLITLLSTLGVKDH+FEKKQ+ AVDQL+
Sbjct: 576 LSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLD 635
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL DP++A+E LE+MSPGE+ NVLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KT
Sbjct: 636 TILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 695
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+PNGRSMMGCLDETRTL YG+VFVQ+S G +Q G L R + S F+++GK
Sbjct: 696 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFRGSGSHHDNFILEGK 754
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
+VVAKNPCLHPGDVRVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 755 IVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 814
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 815 DRDLIPPQQINPMDY 829
>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 467 bits (1202), Expect = e-129
Identities = 233/315 (73%), Positives = 254/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
EI YVFSDGIGKIS + AHRVA KC KSS PSAFQIRY GYKGVVAVDPTS +
Sbjct: 58 EIHKXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRK 117
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N LDVL WSK+QP FLNRQLITLLSTLGVKDH+FEKKQ+ AVDQL+
Sbjct: 118 LSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLD 177
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL DP++A+E LE+MSPGE+ NVLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KT
Sbjct: 178 TILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 237
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+PNGRSMMGCLDETRTL YG+VFVQ+S G +Q G L R + S F+++GK
Sbjct: 238 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFRGSGSHHDNFILEGK 296
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
+VVAKNPCLHPGDVRVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 297 IVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 356
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 357 DRDLIPPQQINPMDY 371
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 464 bits (1195), Expect = e-128
Identities = 230/315 (73%), Positives = 258/315 (81%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+IE KYVFSDGIGK+SAEFA +VA KC +K + PSAFQIRY GYKGVVA DPTS K
Sbjct: 531 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 590
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLR SMRKY S+ KLDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV QL+
Sbjct: 591 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 650
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
ILTDPL A+E LE+MSPGE+ N+LKE+L+CGYKPD EPFLSMMLQTFRA KLLELR KT
Sbjct: 651 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 710
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGRSMMGCLDETRTLNYGQVFVQ+S G +Q G S+ ++ ++ F+V+G
Sbjct: 711 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE--SSLFSSSRSRQRFIVQGL 768
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGDVRVL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV W
Sbjct: 769 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 828
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 829 DDELIPPQQDPPMDY 843
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 452 bits (1163), Expect = e-125
Identities = 228/315 (72%), Positives = 252/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
EI+ +G YVFSDGIGKISA+FA +VA KC + PSAFQIR G+KGVVAVDPTS K
Sbjct: 520 EIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKK 579
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLR SM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV DH FE+KQ+E VDQLN
Sbjct: 580 LSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLN 639
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
ILTDPL A+E LE+MSPGE+ N+LKEML+CGY+PD EPFLSMMLQTFRA KLLELR K+
Sbjct: 640 AILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKS 699
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+ NGRSMMGCLDETRTL+YGQVFVQVS + SEQR F+V+GK
Sbjct: 700 RIFVANGRSMMGCLDETRTLDYGQVFVQVS----------------GSRSEQR-FIVQGK 742
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGDVRVL AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV W
Sbjct: 743 VVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCW 802
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 803 DPELIPSKQIPPMDY 817
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 451 bits (1159), Expect = e-124
Identities = 223/315 (70%), Positives = 248/315 (78%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
EI +G KYVFSDGIGKISAEFA +VA KC +K PSAFQIR G+KGVVA+DPTS
Sbjct: 520 EIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWK 579
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV D FEKKQ+E VDQLN
Sbjct: 580 LSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLN 639
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
+LTDPL A+E LE+MSPGE+ N+LKEML+CGYKPD EPFLSMML+TFRA KLLELR K
Sbjct: 640 ALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKA 699
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+ GRSMMGCLDETRTLNYGQVFVQ S + +R F+V+GK
Sbjct: 700 RIFVQKGRSMMGCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGK 742
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
V+VAKNPCLHPGDVRVL+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV W
Sbjct: 743 VIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 803 DPELIPYKQIDPMDY 817
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 449 bits (1156), Expect = e-124
Identities = 222/315 (70%), Positives = 248/315 (78%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
EI +G KYVF DGIGKISAEFA +VA KC +K PSAFQIR G+KGVVA+DPTS
Sbjct: 520 EIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWK 579
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV D+ FEKKQ+E VDQLN
Sbjct: 580 LSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLN 639
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
+LTDPL A+E LE+MSPGE+ N+LKEML+CGYKPD EPFLSMML+TFRA KLLELR K
Sbjct: 640 ALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKA 699
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIF+ GRSMMGCLDETRTLNYGQVFVQ S + +R F+V+GK
Sbjct: 700 RIFVQKGRSMMGCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGK 742
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
V+VAKNPCLHPGDVRVL+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV W
Sbjct: 743 VIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 803 DPELIPYKQIDPMDY 817
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 449 bits (1154), Expect = e-123
Identities = 225/308 (73%), Positives = 247/308 (80%)
Frame = +1
Query: 22 KYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRKSM 201
KYVFSDGIGKIS EFA +VA KC PSAFQIRY GYKGVVAVDPTS LSLR SM
Sbjct: 604 KYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSM 663
Query: 202 RKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTDPL 381
RKY+S N KLDVL +SKFQPCFLNRQ+ITLLSTLGV+D++FE KQK+AV QL+ IL DP
Sbjct: 664 RKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPE 723
Query: 382 SARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIPNG 561
SA E LE+MSPGE+VNVLKEML CGY PD EPFLSMMLQTFR LKL EL+ KTRIFIPNG
Sbjct: 724 SAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNG 783
Query: 562 RSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAKNP 741
RSMMGCLDET L YGQVFVQ S IGN++ I ++ S+QR VV GKV+VAKNP
Sbjct: 784 RSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNP 843
Query: 742 CLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXXXX 921
CLHPGDVR+L A+DVP LHHMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSWD
Sbjct: 844 CLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPC 903
Query: 922 XXXXXMDY 945
M+Y
Sbjct: 904 HQGTPMEY 911
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 448 bits (1153), Expect = e-123
Identities = 223/315 (70%), Positives = 253/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
E+ G +Y+FSDGIGKISAEFA +VA KC K PSAFQIRYAGYKGVVAVDPTS K
Sbjct: 527 EVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKK 586
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLR+SM KY S+N KLDVL SK+QPCFLNRQLITLLSTLGV DH FE+KQ+EAVDQL+
Sbjct: 587 LSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLD 646
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
+LTDPL A+E LE+MSPGE+ N+LKEML+CGY+PD EPFLSMMLQTFRA KLLELR KT
Sbjct: 647 AMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKT 706
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGRSMMGCLDETRTL +GQVFV+ S G++ + + + +++KG
Sbjct: 707 RIFIPNGRSMMGCLDETRTLEHGQVFVKFS--GSRFRNLYDSSDMFSERGRGQCYLIKGS 764
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+R+L+AVDVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV W
Sbjct: 765 VVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 824
Query: 901 DXXXXXXXXXXXMDY 945
D MDY
Sbjct: 825 DPELIPSQQISPMDY 839
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 447 bits (1151), Expect = e-123
Identities = 226/314 (71%), Positives = 252/314 (80%)
Frame = +1
Query: 4 IETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNL 183
+ + G KYVFSDGIGKISA+FA RVAKKC K+ PSAFQIRY GYKGVVAVDPTS L
Sbjct: 519 VNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKL 578
Query: 184 SLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNM 363
SLRKSM KY S+N KLDVL SK+QPCFLNRQLITLLSTL V+DH+F KKQ+ AV QLN
Sbjct: 579 SLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNA 638
Query: 364 ILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTR 543
ILTDPL A E L++MS GE NVLKE+LMCGYKP+VEPFLSMMLQTFRA KLLELR KTR
Sbjct: 639 ILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTR 698
Query: 544 IFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKV 723
IFIP+GR+MMGCLDETRTL YGQVFVQ S +Q + + ++S F+++GKV
Sbjct: 699 IFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICI----HSSLDSCFIIEGKV 754
Query: 724 VVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWD 903
VVAKNPCLHPGDVRVL+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 755 VVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWD 814
Query: 904 XXXXXXXXXXXMDY 945
MDY
Sbjct: 815 PELIPPKQIQPMDY 828
>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 447 bits (1151), Expect = e-123
Identities = 222/317 (70%), Positives = 253/317 (79%), Gaps = 2/317 (0%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
++E +G YVFSDGIGKISA+FAHRVAKKC ++ + PSAFQIRY GYKGVVAVDP S
Sbjct: 207 DVEVHGTNYVFSDGIGKISADFAHRVAKKCGLQHT-PSAFQIRYGGYKGVVAVDPYSPMK 265
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N KLDVL WSK+QPC+LNRQL+TL+STLGVKD +F++KQ EAV QL+
Sbjct: 266 LSLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLD 325
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E L++MSPGE+ N+LKEML CGY PD EPFLSMMLQTFRA KLL+LR +T
Sbjct: 326 AILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRT 385
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQF--QGHVPLSIRDNTSEQRTFVVK 714
RIFIP GRSMMGCLDE+RTL YGQVFVQ + G +QF + H D+ S F++K
Sbjct: 386 RIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESH---HFNDSGSANYNFILK 442
Query: 715 GKVVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 894
G VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV
Sbjct: 443 GNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 502
Query: 895 SWDXXXXXXXXXXXMDY 945
WD MDY
Sbjct: 503 CWDPDLIPPRQVQPMDY 519
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 442 bits (1136), Expect = e-121
Identities = 221/313 (70%), Positives = 249/313 (79%), Gaps = 2/313 (0%)
Frame = +1
Query: 13 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 192
+G Y+FSDGIGKISA+FAHRV KC ++ + PS+FQIRY GYKGVVAVDP S LSLR
Sbjct: 520 HGTNYIFSDGIGKISADFAHRVTIKCGLQYT-PSSFQIRYGGYKGVVAVDPYSSMKLSLR 578
Query: 193 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 372
KSM KY S NIKLDVL WSK+QPC+LNRQL+TLLSTLGV D + E+KQ EAVDQL+ IL
Sbjct: 579 KSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILH 638
Query: 373 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 552
D L A+E LE+MSPGE+ N+LKEML CGY PD EPFLSMMLQTFRA KLL+LR +TRIFI
Sbjct: 639 DSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFI 698
Query: 553 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQF--QGHVPLSIRDNTSEQRTFVVKGKVV 726
PNGR+MMGCLDE+RTL YGQVFVQ S G +QF + H D+ S F++KG VV
Sbjct: 699 PNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESH---PFNDSGSANCDFILKGNVV 755
Query: 727 VAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDX 906
VAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD
Sbjct: 756 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDP 815
Query: 907 XXXXXXXXXXMDY 945
MDY
Sbjct: 816 DLIPPRQVQSMDY 828
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 441 bits (1135), Expect = e-121
Identities = 220/315 (69%), Positives = 252/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+++ +G YVFSDGIGKISA+FA RVA KC ++ + PSAFQIRY GYKGVVAVDP S
Sbjct: 513 DVKVHGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMK 571
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N KLDVL WSK+QPC+LNRQLITLLSTLGVKD I E+KQKEAVDQL+
Sbjct: 572 LSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLD 631
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E LE+MSPGE+ N+LK ML CGY PD EPFLSMMLQTFRA KLL+LR K+
Sbjct: 632 AILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKS 691
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGR+MMGCLDE+RTL YGQVFVQ + G+++F + ++ S F++KG
Sbjct: 692 RIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNSRSTNCNFILKGN 750
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 751 VVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 810
Query: 901 DXXXXXXXXXXXMDY 945
D M+Y
Sbjct: 811 DQDMIPPRQVQPMEY 825
>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 441 bits (1135), Expect = e-121
Identities = 219/315 (69%), Positives = 252/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+++ +G YVFSDGIGKISA+FA RVA KC ++ + PSAFQIRY GYKGVVAVDP S
Sbjct: 362 DVKVHGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMK 420
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N KLDVL WSK+QPC+LNRQLITLLSTLGVKD + E+KQKEAVDQL+
Sbjct: 421 LSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLD 480
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E LE+MSPGE+ N+LK ML CGY PD EPFLSMMLQTFRA KLL+LR K+
Sbjct: 481 AILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKS 540
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGR+MMGCLDE+RTL YGQVFVQ + G+++F + ++ S F++KG
Sbjct: 541 RIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNSRSTNCNFILKGN 599
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 600 VVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 659
Query: 901 DXXXXXXXXXXXMDY 945
D M+Y
Sbjct: 660 DQDMIPPRQVQPMEY 674
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 441 bits (1133), Expect = e-121
Identities = 218/315 (69%), Positives = 252/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+++ +G YVFSDGIGKISA+FA RVA KC ++ + PSAFQIRY GYKGVVAVDP S
Sbjct: 514 DVKVHGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMK 572
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N KLDVL WSK+QPCFLNRQL+TLLSTLGVKD + E+KQKEAVDQL+
Sbjct: 573 LSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLD 632
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E LE+MSPGE+ N+LK ML CGY PD EPFLSMMLQTFRA KLL+LR ++
Sbjct: 633 AILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRS 692
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGR+MMGCLDE+RTL YGQVFVQ + G+++F + ++ S F++KG
Sbjct: 693 RIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLH-PFNNSRSTNCNFILKGN 751
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 752 VVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
Query: 901 DXXXXXXXXXXXMDY 945
D M+Y
Sbjct: 812 DQDMIPPRQVQAMEY 826
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 440 bits (1131), Expect = e-121
Identities = 217/315 (68%), Positives = 251/315 (79%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+++ +G YVFSDGIGKIS +FAHRVA KC ++ + PSAFQIRY GYKGVV VDP S
Sbjct: 514 DVKVHGTSYVFSDGIGKISGDFAHRVASKCGLQYT-PSAFQIRYGGYKGVVGVDPDSSMK 572
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S NIKLDVL WSK+QPC+LNRQLITLLSTLGVKD + E+KQKEAVDQL+
Sbjct: 573 LSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLD 632
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E LE+MSPGE+ N+LK ML CGYKPD EPFLSMMLQTFRA KLL+LR ++
Sbjct: 633 AILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRS 692
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGR+MMGCLDE+RTL YGQVFVQ + G+ +F + ++ S F++KG
Sbjct: 693 RIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLH-PFNNSRSTNSNFILKGN 751
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+RVL+AV+V LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 752 VVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
Query: 901 DXXXXXXXXXXXMDY 945
D M+Y
Sbjct: 812 DQDMIPPRQVQPMEY 826
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 439 bits (1130), Expect = e-121
Identities = 218/315 (69%), Positives = 251/315 (79%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+++ +G YVFSDGIGKISA+FA RVA KC ++ + PSAFQIRY GYKGVVAVDP S
Sbjct: 514 DVKVHGTSYVFSDGIGKISADFARRVASKCGLQHT-PSAFQIRYGGYKGVVAVDPYSSMK 572
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N KLDVL WSK+QPC+LNRQL+TLLSTLGVKD + E+KQKEAVDQL+
Sbjct: 573 LSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLD 632
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E LE+MSPGE+ N+LK ML CGY PD EPFLSMMLQTFRA KLL+LR K+
Sbjct: 633 AILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKS 692
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGR MMGCLDE+RTL YGQVFVQ + G+++F + ++ S F++KG
Sbjct: 693 RIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLH-PFNNSRSTNCNFILKGN 751
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 752 VVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
Query: 901 DXXXXXXXXXXXMDY 945
D M+Y
Sbjct: 812 DQDMIPPRQVQAMEY 826
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 439 bits (1130), Expect = e-121
Identities = 219/313 (69%), Positives = 249/313 (79%), Gaps = 2/313 (0%)
Frame = +1
Query: 13 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 192
+G Y+FSDGIGKISA+FA RVA KC ++ + PS FQIRY GYKGVVAVDP S LSLR
Sbjct: 521 HGTNYIFSDGIGKISADFARRVAVKCGLQYT-PSCFQIRYGGYKGVVAVDPYSSMKLSLR 579
Query: 193 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 372
SM KY S NIKLDVL WSK+QPC+LNRQL+TLLSTLGVKD +FE+KQ EAVDQL+ IL
Sbjct: 580 NSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILH 639
Query: 373 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 552
D L A+E LE+MSPGE+ N+LKEML CGY PD EPFLSMMLQTFRA KLL+LR ++RIFI
Sbjct: 640 DTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFI 699
Query: 553 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQF--QGHVPLSIRDNTSEQRTFVVKGKVV 726
PNGR+MMGCLDE+RTL YGQVFVQ + G +QF + H D+ S F+++G VV
Sbjct: 700 PNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESH---PFNDSGSTNCDFILEGNVV 756
Query: 727 VAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDX 906
VAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD
Sbjct: 757 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDP 816
Query: 907 XXXXXXXXXXMDY 945
MDY
Sbjct: 817 DLVPPRQFQPMDY 829
>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 439 bits (1130), Expect = e-121
Identities = 217/315 (68%), Positives = 252/315 (80%)
Frame = +1
Query: 1 EIETNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKN 180
+++ +G YVFSDGIGKISA+FA RVA KC ++ + PSAFQIRY GYKGVVAVDP S
Sbjct: 514 DVKVHGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMK 572
Query: 181 LSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 360
LSLRKSM KY S N KLDVL WSK+QPC+LNRQL+TLLSTLGVKD + E+KQKEAVDQL+
Sbjct: 573 LSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLD 632
Query: 361 MILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKT 540
IL D L A+E LE+MSPGE+ N+LK ML CGY PD EPFLSMMLQTFRA KLL+LR ++
Sbjct: 633 AILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRS 692
Query: 541 RIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGK 720
RIFIPNGR+MMGCLDE+RTL YGQVFVQ + G+++F + ++ S F++KG
Sbjct: 693 RIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNSRSTNCNFILKGN 751
Query: 721 VVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 900
VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV W
Sbjct: 752 VVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
Query: 901 DXXXXXXXXXXXMDY 945
D M+Y
Sbjct: 812 DQDMIPPRQVQPMEY 826