BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00017317
         (2108 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   456   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   447   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   421   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   443   0.0  
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   443   0.0  
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   420   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   444   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   436   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   428   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   441   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   422   0.0  
ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phas...   422   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   410   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     412   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   414   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   415   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   407   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    405   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     406   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    412   0.0  

>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  456 bits (1174), Expect(2) = 0.0
 Identities = 223/369 (60%), Positives = 283/369 (76%), Gaps = 2/369 (0%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHFVSP+A T AL+AAG+ EL  +G PLKVSLGPE+PF +N+RRRT  PFKF +V 
Sbjct: 77   PHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFPFKFPDVR 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            ++IG LVS+ E++ GW+ P+SGVD +VDPFD TC+ LFT++TAFS K   K  V+ C+F 
Sbjct: 137  LEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI E++Q +D+SSLI++ QLSSSP + YRTADDDI  TVPFDLLDDDDPWIRTT
Sbjct: 197  VEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIP--NDFLEKQLMVRDEPEPDYG 714
            DFT+ GAIG+CN Y+IS+  R+  +L+KAMDYL+ R++    D  + QL VRD  EPD+G
Sbjct: 257  DFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRD--EPDFG 314

Query: 715  MRISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRH 894
            + +S+PFFCIQHKEGI F  MFLVNAVMHKGI++ H LS++FF+ LR   +++NIAAL+H
Sbjct: 315  LPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKH 374

Query: 895  MYSYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVEL 1074
            + SYR PVFD  ++LK V +WLL+NP                +LVITP+KAYCLPP VEL
Sbjct: 375  ICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVEL 434

Query: 1075 SNRVLRKYK 1101
            SNRVLR YK
Sbjct: 435  SNRVLRNYK 443



 Score =  411 bits (1056), Expect(2) = 0.0
 Identities = 206/303 (67%), Positives = 240/303 (79%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N YVAP+VK +TS S+ QKT VF RV TI+ DGF+LCGRKY+FLAFS NQLRD SAWFFA
Sbjct: 468  NYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFA 527

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            ED+   V  I  WMG+F +RNVAK AARMG CFSSTY T+EVPS EV  +L D+KRNGY 
Sbjct: 528  EDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYD 586

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIGKI PDLAMEVAEKL+L E +P AYQIR+AGCKGV+ACWP  +DGIRLS RPSMN
Sbjct: 587  FSDGIGKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMN 645

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF+S H I+E+ SWTRFQPGFLNRQI+TLLSALNVPD  F +MQ+SM+ KL+QML  TDV
Sbjct: 646  KFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDV 705

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L  SC+E+GNTA +ML AGF+PQTEPHL  ML+ IR A   GL EK      +  G
Sbjct: 706  AFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIF--VPSG 763

Query: 2049 SWV 2057
             W+
Sbjct: 764  RWL 766


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  447 bits (1149), Expect(2) = 0.0
 Identities = 218/367 (59%), Positives = 274/367 (74%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHFVSP +VT A++AAGR EL FN  PLKVSLGPE+P+F+N+RRRT  PFK S+V 
Sbjct: 76   PHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPFKLSDVH 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IG+LV + EF+  W+ P  GVD +VDPFD TC+  FT +TAFS K  +K  V+ CDF 
Sbjct: 136  VEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVIKCDFK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI EIKQ  D S L+++ +L+SSP +SYRTADDDI  +VPFDLLDDDDPWIRTT
Sbjct: 196  VEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDDPWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN Y++ +  RH  +L+KAM+YL++R++    ++    ++D  EPD+GM 
Sbjct: 256  DFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQD--EPDFGMS 313

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
             + PFF IQ++EGISFE MFLVNAVMHKG V+ H LS+ FF  LR   +E+N+AAL+H+ 
Sbjct: 314  NTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAALKHLC 373

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SYR PVFD CE+LK VQ+WLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 374  SYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSN 433

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 434  RVLRKYK 440



 Score =  407 bits (1046), Expect(2) = 0.0
 Identities = 203/303 (66%), Positives = 236/303 (77%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N YVAP+VKE+TS S+ QKT+VF R  TI+ DGF+LCGRKYTFLAFS NQLRD SAWFFA
Sbjct: 465  NYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFA 524

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            E   + V  IT WMG+F ++NVAK AARMG CFSSTY T+EV S EVN  + D+KRNGYV
Sbjct: 525  ECVNISVGKITSWMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYV 583

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG ITPDLA+EVAEKL+L  N P AYQIRFAGCKGV+ACWP K DG RLSLR SMN
Sbjct: 584  FSDGIGMITPDLALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMN 643

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S H  +E+ SWTR+QPGFLNRQIITLLS LNV D+ F RMQ+ MV KL+QML  TDV
Sbjct: 644  KFESKHTTLEICSWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDV 703

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+E+GN A +ML AGF+PQTEPHL  ML+ I+ A L GL EK      +  G
Sbjct: 704  AFDVLTASCAEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIF--VHSG 761

Query: 2049 SWV 2057
             W+
Sbjct: 762  RWL 764


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  421 bits (1083), Expect(3) = 0.0
 Identities = 202/367 (55%), Positives = 267/367 (72%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHFVSP +  +AL+AAGRGELIFN   LK SLGPESPF +N+RRRT  PFK S+V 
Sbjct: 76   PHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKVPFKLSDVQ 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V IG L     F V W+ P+SG+D +VDPFD TC+  FT++TAFS KD  K T L CD+ 
Sbjct: 136  VDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKHTFLKCDYK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V +I +I +  D S  +++ QL+SSP + YRTADDDI   VP+DLLDDDDPWIRTT
Sbjct: 196  MEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKLVPYDLLDDDDPWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT+ GAIG+CN +++S+  R+ ++L  AM+YLK++++    L +   + +  EPDYG++
Sbjct: 256  DFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILN--EPDYGVQ 313

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +++ FFCI +K+ ISFE +FLVNAVMHKGI++ H +S+ FF+ LR    E+N+AAL H++
Sbjct: 314  MTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIH 373

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            ++RRPV D C+KLK VQEWLL+NP                +LVITP+KAYC PP VELSN
Sbjct: 374  AFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSN 433

Query: 1081 RVLRKYK 1101
            RVLR+YK
Sbjct: 434  RVLRRYK 440



 Score =  396 bits (1017), Expect(3) = 0.0
 Identities = 196/297 (65%), Positives = 236/297 (79%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            YVAP+VKE+TS S+ QKT +F R+  I+K GFHLCGRKY+FLA+S NQLRD SAWFFAE 
Sbjct: 467  YVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAEC 526

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
            +++ V  I  WMG+F ++NVAK AAR+G CFSSTY TIEVP   VN  L DV+RNGYVFS
Sbjct: 527  KSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFS 586

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG ITPDLA EVA+KL++  + P AYQIR+AG KGV+A WP K DGIRL+LRPSMNKF
Sbjct: 587  DGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKF 646

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQIITLLS L+VPD+ F  MQ++M+ KLD+M+  TDVAF
Sbjct: 647  ESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAF 706

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEG 2045
            E+L+ SC+E+GN A +ML AGFEP+TEPHL  ML  IR A L GL E K  +FV EG
Sbjct: 707  EVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLRE-KARIFVTEG 762



 Score = 53.5 bits (127), Expect(3) = 0.0
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +2

Query: 2021 RIFVRSGRWLMGCFDELGVLEYGQCFIQV 2107
            RIFV  GRW MGCFDE GVL+ GQCFIQV
Sbjct: 756  RIFVTEGRWCMGCFDESGVLQEGQCFIQV 784


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  443 bits (1140), Expect(2) = 0.0
 Identities = 212/367 (57%), Positives = 275/367 (74%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF  P  VT+A++AAGR EL  NG  LKVSLGPE+PF +N+R RT  PFK  +VC
Sbjct: 77   PHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVC 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS+ EF+V W+ PASG D +VDPFD TC+  FT + AF+LK + +  V+ C+F 
Sbjct: 137  VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI  +KQ  + S + ++ QL+SSP + YRTADDDI + VPFD+LDDDDPWIRTT
Sbjct: 197  VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN Y+IS+S+RH  +L K + YL +R++  D L + + +R+  EPD+ + 
Sbjct: 257  DFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIRE--EPDFEVP 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFCI ++EGISFE MFLVNAVMHKGI++ H LS+ FF+ LR  +RE+N+AAL+H+Y
Sbjct: 315  MSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIY 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PVFD C++LK VQEWLL++P                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSN 434

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 435  RVLRKYK 441



 Score =  404 bits (1037), Expect(2) = 0.0
 Identities = 203/324 (62%), Positives = 245/324 (75%), Gaps = 15/324 (4%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            ++AP+V+++T  S+SQKT VF RV +I+  GF+LCGRK++FLAFS +QLRD SAWFF+ED
Sbjct: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
                V+DI +WMG F D+N+AK AARMG CFSSTY T+EVP  EV+ +L D+KRNGYVFS
Sbjct: 528  GKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPG-AYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNK 1691
            DGIGKITPDLAMEVA+KL+L  N P  AYQIR+AGCKGV+ACWP K DGIR+SLR SMNK
Sbjct: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647

Query: 1692 FISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVA 1871
            F S H  +E+ SWTRFQPGFLNRQIITLLS LNVPD+ F  MQDSM+ KL+QML  +DVA
Sbjct: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707

Query: 1872 FEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGF-------- 2027
            FE+L+ +C+E+GNTA +ML AGF PQTEPHL  ML+ IR A L GL EK           
Sbjct: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767

Query: 2028 ------LFVLEGGSWVALMSSGYL 2081
                  L VLEGG     +S  +L
Sbjct: 768  MGCLDELGVLEGGQCFIQVSEPFL 791


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  443 bits (1140), Expect(2) = 0.0
 Identities = 212/367 (57%), Positives = 275/367 (74%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF  P  VT+A++AAGR EL  NG  LKVSLGPE+PF +N+R RT  PFK  +VC
Sbjct: 77   PHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVC 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS+ EF+V W+ PASG D +VDPFD TC+  FT + AF+LK + +  V+ C+F 
Sbjct: 137  VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI  +KQ  + S + ++ QL+SSP + YRTADDDI + VPFD+LDDDDPWIRTT
Sbjct: 197  VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN Y+IS+S+RH  +L K + YL +R++  D L + + +R+  EPD+ + 
Sbjct: 257  DFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIRE--EPDFEVP 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFCI ++EGISFE MFLVNAVMHKGI++ H LS+ FF+ LR  +RE+N+AAL+H+Y
Sbjct: 315  MSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIY 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PVFD C++LK VQEWLL++P                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSN 434

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 435  RVLRKYK 441



 Score =  404 bits (1037), Expect(2) = 0.0
 Identities = 203/324 (62%), Positives = 245/324 (75%), Gaps = 15/324 (4%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            ++AP+V+++T  S+SQKT VF RV +I+  GF+LCGRK++FLAFS +QLRD SAWFF+ED
Sbjct: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
                V+DI +WMG F D+N+AK AARMG CFSSTY T+EVP  EV+ +L D+KRNGYVFS
Sbjct: 528  GKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPG-AYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNK 1691
            DGIGKITPDLAMEVA+KL+L  N P  AYQIR+AGCKGV+ACWP K DGIR+SLR SMNK
Sbjct: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647

Query: 1692 FISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVA 1871
            F S H  +E+ SWTRFQPGFLNRQIITLLS LNVPD+ F  MQDSM+ KL+QML  +DVA
Sbjct: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707

Query: 1872 FEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGF-------- 2027
            FE+L+ +C+E+GNTA +ML AGF PQTEPHL  ML+ IR A L GL EK           
Sbjct: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767

Query: 2028 ------LFVLEGGSWVALMSSGYL 2081
                  L VLEGG     +S  +L
Sbjct: 768  MGCLDELGVLEGGQCFIQVSEPFL 791


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  420 bits (1080), Expect(3) = 0.0
 Identities = 201/367 (54%), Positives = 267/367 (72%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHFVSP +  +AL+AAGRGELIFN   LK SLGPESPF +N+RRRT  PFK S+V 
Sbjct: 76   PHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKVPFKLSDVQ 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V IG L     F V W+ P+SG+D +VDPFD TC+  FT++TAFS KD  K T L CD+ 
Sbjct: 136  VDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKHTFLKCDYK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V +I +I +  D S  +++ QL++SP + YRTADDDI   VP+DLLDDDDPWIRTT
Sbjct: 196  MEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLVPYDLLDDDDPWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT+ GAIG+CN +++S+  R+ ++L  AM+YLK++++    L +   + +  EPDYG++
Sbjct: 256  DFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILN--EPDYGVQ 313

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +++ FFCI +K+ ISFE +FLVNAVMHKGI++ H +S+ FF+ LR    E+N+AAL H++
Sbjct: 314  MTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIH 373

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            ++RRPV D C+KLK VQEWLL+NP                +LVITP+KAYC PP VELSN
Sbjct: 374  AFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSN 433

Query: 1081 RVLRKYK 1101
            RVLR+YK
Sbjct: 434  RVLRRYK 440



 Score =  396 bits (1017), Expect(3) = 0.0
 Identities = 196/297 (65%), Positives = 236/297 (79%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            YVAP+VKE+TS S+ QKT +F R+  I+K GFHLCGRKY+FLA+S NQLRD SAWFFAE 
Sbjct: 467  YVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAEC 526

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
            +++ V  I  WMG+F ++NVAK AAR+G CFSSTY TIEVP   VN  L DV+RNGYVFS
Sbjct: 527  KSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFS 586

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG ITPDLA EVA+KL++  + P AYQIR+AG KGV+A WP K DGIRL+LRPSMNKF
Sbjct: 587  DGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKF 646

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQIITLLS L+VPD+ F  MQ++M+ KLD+M+  TDVAF
Sbjct: 647  ESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAF 706

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEG 2045
            E+L+ SC+E+GN A +ML AGFEP+TEPHL  ML  IR A L GL E K  +FV EG
Sbjct: 707  EVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLRE-KARIFVTEG 762



 Score = 53.5 bits (127), Expect(3) = 0.0
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +2

Query: 2021 RIFVRSGRWLMGCFDELGVLEYGQCFIQV 2107
            RIFV  GRW MGCFDE GVL+ GQCFIQV
Sbjct: 756  RIFVTEGRWCMGCFDESGVLQEGQCFIQV 784


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  444 bits (1141), Expect(2) = 0.0
 Identities = 211/367 (57%), Positives = 271/367 (73%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF  P++ T A++AA R EL  N   LK SLGPE+PF +N+RRR   PFK S V 
Sbjct: 77   PHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSGVG 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS+ EF+VGW+ P +GVD +VDPFD TCR  F+  TAFS K   +  V+ CDF 
Sbjct: 137  VEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V +I EIKQ  + S L+++ QL+S+P + YRTADDDI ++VPFDLLDDDDPWIRTT
Sbjct: 197  VEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+C+ Y++S+  RH  +L KA+D+LK+R++  ++L + + +RD  EPD+GM 
Sbjct: 257  DFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRD--EPDFGMP 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +++PFFCI HKEGI+F+ +FLVNAVMHKGI + H LS +FF+ LR    E+N+AAL+H+Y
Sbjct: 315  MTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIY 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
             YRRPVFD  +KLK  QEWLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  PYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSN 434

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 435  RVLRKYK 441



 Score =  397 bits (1021), Expect(2) = 0.0
 Identities = 194/303 (64%), Positives = 237/303 (78%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N + AP+V+ +TS S+ QKT +F RV +I+ +GF+LCGR+Y+FLAFS NQLRD SAWFFA
Sbjct: 466  NYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFA 525

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            ED  + V+ I  WMG+F ++N+AK AARMG CFSSTY TIEVP +EVNS L D+KRNGY 
Sbjct: 526  EDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYD 585

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG ITPDLA EVAEKL+   + P AYQIR+AGCKGV+ACWP + DGIRLSLR SMN
Sbjct: 586  FSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMN 645

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S+H I+E+ SWTRFQPGFLNRQIITLLSALNVPD  F +MQ+ MV KL+QML  +DV
Sbjct: 646  KFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDV 705

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+E+GN A +ML AGF+PQ EPHL  ML+ +R A L GL EK      +  G
Sbjct: 706  AFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIF--VPSG 763

Query: 2049 SWV 2057
             W+
Sbjct: 764  RWL 766


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  436 bits (1120), Expect(2) = 0.0
 Identities = 210/367 (57%), Positives = 270/367 (73%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP   T A++AAGR EL+FN   LKVSLGPE+P+++N+RRR   PFK S+VC
Sbjct: 77   PHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNTTPFKLSDVC 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            + IG +VS+ EF+VGW+ P  GVD +VDPFD TC+  F+ +TAFS K   +  V+ CDF 
Sbjct: 137  LDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTEYAVIKCDFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V +I EIKQ  + S L+V  QL+SSP + YRTADD+I  +VPFDLLDDDD WIRTT
Sbjct: 197  VEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLLDDDDQWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN Y++ +  RH  +L+KA+DYL+++++P D++   L + D  EPD+G  
Sbjct: 257  DFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRISD--EPDFGRS 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PF+CI +KEGI FE MFLVNAVMHKGI + H LSE+FF  LR   RE+N+AAL+H+Y
Sbjct: 315  MSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNVAALKHIY 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SYRRPVFD  ++LK V +WLL+NP                +LVITPTKA+CL P VELSN
Sbjct: 375  SYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSN 434

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 435  RVLRKYK 441



 Score =  398 bits (1022), Expect(2) = 0.0
 Identities = 195/301 (64%), Positives = 235/301 (78%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V++VTS  +SQKT VF RV +I+ DGF+LCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YAASIVRDVTSTFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
                V+ I RWMG+F +RN+AK AARMG CFSSTY T+EVPS EVN  L D++RNGYVFS
Sbjct: 528  GKTSVLQILRWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIGKITPDLA EVA+KL+L  N P AYQIR+AGCKGV+ACWP + DG+RLSLR SMNKF
Sbjct: 588  DGIGKITPDLAKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S H  +E+ SWTRFQPGFLNRQIITLLS   VPD+ F  MQ++MV KL+++L  TDVAF
Sbjct: 648  FSDHTTLEICSWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            E+L+ SCSE+GN A +ML AGF+PQTEPHL  +L+ +R + L GL EK      +  G W
Sbjct: 708  EVLTSSCSEQGNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIF--VPSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  428 bits (1100), Expect(2) = 0.0
 Identities = 210/370 (56%), Positives = 269/370 (72%), Gaps = 3/370 (0%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF  P++ T A+NA+GR EL  N   LKVSLGP++PF +N+RRRT  PFK S+V 
Sbjct: 77   PHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFKLSDVG 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
             +IG LVS+ EF+VGW+ P SGVD +VDPFD TC+  F+  TAFSLK   +  V+ CDF 
Sbjct: 137  FEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V +I EI Q  + S L+++ QL+S+P + YRTADDDI   VPFDLLDDDDPWIRTT
Sbjct: 197  VEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQ---LMVRDEPEPDY 711
            DFT  GAIG+C+ Y++S+  RH  +L KA+ YLK+R++    L+++     +R   EPD+
Sbjct: 257  DFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRV--QVLQEENHRRRIRILDEPDF 314

Query: 712  GMRISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALR 891
            GM +S+PFFCI HKEGI+FE +FLVNAVMHKGI + H LS +FF+ LR    E+N++AL+
Sbjct: 315  GMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALK 374

Query: 892  HMYSYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVE 1071
            H+ +YRRPVF+   +LK VQEWLL+NPN               +LVITPTKAYCLPP VE
Sbjct: 375  HICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVE 434

Query: 1072 LSNRVLRKYK 1101
            LSNRVLRKYK
Sbjct: 435  LSNRVLRKYK 444



 Score =  404 bits (1038), Expect(2) = 0.0
 Identities = 192/303 (63%), Positives = 241/303 (79%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N YVAP+V+++TS S+ QKT +F RV +I+ +GF+LCGR+Y+FLAFS NQLRD SAWFF+
Sbjct: 469  NYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFS 528

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            E+  + V+D+  WMG+F +RN+AK AARMG CFSSTY TIEVP +EVNS L D++RNGYV
Sbjct: 529  EERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYV 588

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG ITPDLA EVAEKL+L  + P AYQIR+AGCKGV+ACWPGK DG+RLSLRPSMN
Sbjct: 589  FSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMN 648

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S+H  +E+ SWTRFQPGFLNRQIITLLS LNVPD  F +MQ++MV KL+QM  ++DV
Sbjct: 649  KFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDV 708

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+++GN A +ML AGF+P  EPHL  ML+ +R A L  L EK      +  G
Sbjct: 709  AFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIF--VPSG 766

Query: 2049 SWV 2057
             W+
Sbjct: 767  RWL 769


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  441 bits (1135), Expect(2) = 0.0
 Identities = 214/367 (58%), Positives = 269/367 (73%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP + T A NAAG  EL FNG P+KVSLGPE+PF +N+RRRT  PFK S+V 
Sbjct: 77   PHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKLSDVH 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS+ EF VGW+ P SGVD +VDPFD  C+  FT +TAFS K   +  V+ CDF 
Sbjct: 137  VEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            LEF V +I EIKQ  D S L+++ QL+S+PS+ YRTADDDI + VPFDLLDDDDPWIRTT
Sbjct: 197  LEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN Y++S+  RH  +L++A+++L++R++  D L + L V  EPE  Y M 
Sbjct: 257  DFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPE--YEMP 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFCI H+EG+ F  MFLVNAVMHKGI + H LS+ FF+ LR    ++NIAALRH+ 
Sbjct: 315  MSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHIC 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PVFD  ++LK VQ+WLL+NP                +L ITPT+AYCLPP VELSN
Sbjct: 375  SYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSN 434

Query: 1081 RVLRKYK 1101
            RVLR+YK
Sbjct: 435  RVLRRYK 441



 Score =  390 bits (1002), Expect(2) = 0.0
 Identities = 192/301 (63%), Positives = 230/301 (76%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y AP+V+++TS S+SQKT +F RV +I+ DGF+LCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
                V  I  WMG+F +RN+AK AARMG CFSSTY T+EVPS E    L D++RN Y+FS
Sbjct: 528  GKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG ITPDLA EVAEKL+L  N P AYQIR+AGCKGV+ACWP   DGIRLSLR SMNKF
Sbjct: 588  DGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H  +E+ SWTRFQPGFLNRQIITLLS L+VPD+ F +MQ  MV KL+QM    DVAF
Sbjct: 648  HSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            ++++ SC+E+GNTA +ML AGF P+TEPHL  ML+ IR A L GL EK      +  G W
Sbjct: 708  DVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIF--VPSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766



 Score = 59.3 bits (142), Expect = 7e-06
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +2

Query: 2021 RIFVRSGRWLMGCFDELGVLEYGQCFIQV 2107
            RIFV SGRWLMGC DELGVLE+GQCFIQV
Sbjct: 757  RIFVPSGRWLMGCLDELGVLEHGQCFIQV 785


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  422 bits (1085), Expect(2) = 0.0
 Identities = 209/367 (56%), Positives = 266/367 (72%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP+AVT A++AAGR EL FN   LKVSLGPE+P+++N+RRR   PFK  +V 
Sbjct: 77   PHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTPFKLPDVS 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            ++IGTL S  EF VGW+ P SGV+ +VDPFD TC+  F+ +TAFS K   +  V+ CDF 
Sbjct: 137  LEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVIKCDFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI E+KQ  + +  +V+ QL+SSP + YRTADDD   TVPF LLDDDD WIRTT
Sbjct: 197  VEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDDDDQWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN Y++ +  RH L+L+KAMDYL++R++P + L  QL +RD  EPD+G  
Sbjct: 257  DFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRD--EPDFGRS 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+ F+ I +KEGI FE MFLVNAV+HKGI + H LS +FF  LR  + E+N+AAL+H+Y
Sbjct: 315  MSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIY 373

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SYR PV+D  E+LK V +WLL+NP                +LVITPTKAYCL P VELSN
Sbjct: 374  SYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLPEVELSN 433

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 434  RVLRKYK 440



 Score =  392 bits (1007), Expect(2) = 0.0
 Identities = 193/301 (64%), Positives = 232/301 (77%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V++VTS S+SQKT VF RV +I+ DGF+LCGRKY+FLAFS NQLRD +AWFFAED
Sbjct: 467  YNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAED 526

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
              + V+ I  WMG+F +RN+AK AARMG CFSSTY T+EVPS +VN  L D+KRNGY FS
Sbjct: 527  GKINVLQIIGWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFS 586

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIGKITPDLAMEVA+KL+L  N P AYQIR+AGCKGV+ACWP + D IRLSLR SM KF
Sbjct: 587  DGIGKITPDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKF 646

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S H  +E+ SWTRFQPGFLNRQIITLLS L VPD+ F  MQ+SMV KLD++L  TD AF
Sbjct: 647  FSHHTTLEICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAF 706

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            E++  SC E+G+T  +ML AGF+PQTEPHL  ML+ +R + L GL EK      +  G W
Sbjct: 707  EVVISSCGEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIF--IHSGRW 764

Query: 2055 V 2057
            +
Sbjct: 765  L 765


>ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
            gi|561010117|gb|ESW09024.1| hypothetical protein
            PHAVU_009G093700g [Phaseolus vulgaris]
          Length = 1204

 Score =  422 bits (1085), Expect(2) = 0.0
 Identities = 208/367 (56%), Positives = 262/367 (71%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP++VT ALNA+GR +L     PLKVS GPE+P+F+NKRRRT  PFK S+V 
Sbjct: 77   PHAFVHFASPESVTAALNASGRCDLFLKNEPLKVSCGPENPYFLNKRRRTTIPFKMSDVI 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS  EF+V WK P  GV  +VDPFD  CR  FT + AF  K  EK  V+ CDF 
Sbjct: 137  VEIGTLVSPGEFFVAWKGPDKGVKFLVDPFDGMCRFCFTRDIAFPFKGIEKEAVIKCDFQ 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            + F V +I EI++  D S L+V+  L+SSP + YRTA+DDI   VPFDLLDDDDPWIRTT
Sbjct: 197  VGFLVRDINEIRRYNDSSYLVVLLHLASSPWVWYRTAEDDIEDLVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN+YKIS+  RH  +L KAM YLK +++    L  +  +R   EPD+G  
Sbjct: 257  DFTPSGAIGRCNFYKISIPPRHGAKLMKAMLYLKGQRVQMQELPLKQTLRALNEPDFGTP 316

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +SNPFF I ++ GI+F+ MFLVNA++HKGI + H LS+ FFE LR   +ELN+AAL+H+ 
Sbjct: 317  MSNPFFYIDYQVGITFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKHLC 376

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+RPVFD  ++LK VQEWLL+NP                +LVITP+KAYC+PP VELSN
Sbjct: 377  SYKRPVFDATKRLKVVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSN 436

Query: 1081 RVLRKYK 1101
            RVLRK++
Sbjct: 437  RVLRKFR 443



 Score =  390 bits (1003), Expect(2) = 0.0
 Identities = 199/313 (63%), Positives = 240/313 (76%), Gaps = 2/313 (0%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N YVAP+VKE+TS ++SQKT ++ RV TI+++GF+ CGRKY+FLAFS NQLRD SAWFFA
Sbjct: 468  NYYVAPIVKEITSNTFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFA 527

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            E E +K  +I  WMG+F  +NVAK AARMG CFSSTY T+EV + EVNS L DV+RN YV
Sbjct: 528  E-EKMKCDEIRSWMGKFNQKNVAKCAARMGQCFSSTYATVEVVANEVNSMLPDVERNNYV 586

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG ITPDLA EVAEKL+L +N P AYQIR+AG KGV+A WP K DGIRLSLRPSMN
Sbjct: 587  FSDGIGIITPDLAREVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGIRLSLRPSMN 645

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S+H I+E+ +WTRFQPGFLNRQIITLLSAL VPD+ F +MQ++M+ KL+QML   D+
Sbjct: 646  KFQSTHTILEICAWTRFQPGFLNRQIITLLSALGVPDEIFWKMQEAMLWKLNQMLVDADI 705

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+E GN A +ML  GF P TEPHL  ML+S R A L GL EK      +  G
Sbjct: 706  AFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIF--VSSG 763

Query: 2049 SWV--ALMSSGYL 2081
             W+   L  SG L
Sbjct: 764  RWLMGVLDESGVL 776


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  410 bits (1055), Expect(2) = 0.0
 Identities = 198/303 (65%), Positives = 238/303 (78%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            NSYVAP+VKE+T  ++ QKT V+ R+  I+ +GFHLCGRKY+FLAFS NQLRD SAWFFA
Sbjct: 466  NSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFA 525

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            ED+T+ +  I  WMG F +RNVAK AARMG CFSSTY T+EVPS +VN +L D++RNGYV
Sbjct: 526  EDKTISIQGIKNWMGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYV 585

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG+ITPDLAMEVAEKL+L  + P AYQIR+ GCKGV+ACWP   DG RLSLR SMN
Sbjct: 586  FSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMN 645

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S H  +E+ SWTR QPGFLNRQIITLLSALNVPD+ F  MQ++MV KL QML  TDV
Sbjct: 646  KFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDV 705

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+E+GN+A +ML AGF+PQTEPHL  ML+ I+ A L GL EK      +  G
Sbjct: 706  AFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIF--VPSG 763

Query: 2049 SWV 2057
             W+
Sbjct: 764  RWL 766



 Score =  402 bits (1032), Expect(2) = 0.0
 Identities = 201/367 (54%), Positives = 257/367 (70%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP++VT  ++A GR +L FN   LK SLGPE+ F +NKRRRT  PFK ++V 
Sbjct: 77   PHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRTKIPFKLADVR 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            ++IG+LV   EF+V WK P  GVD VVDPFD TC+  F  +TAFS K   K  V+ CDF 
Sbjct: 137  LEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLNKHAVITCDFK 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
             EF V EI E K   +    +++ +L SSP +SYRTADDDI  +V FDLLDDDDPWIRTT
Sbjct: 197  AEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CNYY++ +  RH  +L+KAM YLK+R++   F++K   ++D  EP +G  
Sbjct: 257  DFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQD--EPGFGNP 314

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+  F I +++ ISF+ +FLVNAVMHKGI++ H LSE FF+ LR    E+N+AAL+H+ 
Sbjct: 315  MSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEINVAALKHLC 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PVFD  ++LK VQEWLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSN 434

Query: 1081 RVLRKYK 1101
            RVLRKYK
Sbjct: 435  RVLRKYK 441


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  412 bits (1059), Expect(2) = 0.0
 Identities = 204/367 (55%), Positives = 264/367 (71%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF S ++   AL AAG  ELI    PL VSLGPE+P+ +N+RRRT  PFKFS+V 
Sbjct: 76   PHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVS 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V++G LVSK +F VGW+ P +GVD +VDPF+ TC+ILFT++TAFS +   +  ++ C+F 
Sbjct: 136  VEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI EIK+ KD +SL+++FQL+SSP + YRTADDDI  +V FDLLDDDD WIRTT
Sbjct: 196  IEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            D T  GAIG+CN Y+IS+  R+    EKAM Y   R++P   +  + M+R + EPD+G+ 
Sbjct: 256  DITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVS 315

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFC Q+ EGISF  +FLVNAV+HKGIV+ H ++ EFF  LR H  E+N AAL+HM+
Sbjct: 316  MSDPFFCFQN-EGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMF 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PV D  +KL  +Q+WLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSN 434

Query: 1081 RVLRKYK 1101
            RVLR YK
Sbjct: 435  RVLRNYK 441



 Score =  397 bits (1021), Expect(2) = 0.0
 Identities = 195/301 (64%), Positives = 237/301 (78%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V+E+TS S  Q+T++F RV +I+  GFHLCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
              ++V  I  WMG F +RNVAK AARMG CFSSTY T+EVPS EVNS+L D++RNGYVFS
Sbjct: 528  PKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG I+ DLA+EVAEKL L+ N P AYQIR+AGCKGV+ACWP K+DGIRLSLRPSM KF
Sbjct: 588  DGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V D  F  MQ  M+  LD+ML  +DVAF
Sbjct: 648  DSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            ++++ SC+E GNTA +ML AGF+PQ+EPHL  MLSSIR + L G L  K  +FV   G W
Sbjct: 708  DVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQL-GDLRNKARIFV-PSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  414 bits (1065), Expect(2) = 0.0
 Identities = 200/367 (54%), Positives = 264/367 (71%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP++VT ALNA+G  +L     PLKVS GP++P+F+N+RRRT  PFK S+V 
Sbjct: 77   PHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQRRRTTTPFKMSDVL 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS  EF+V W+ P  GV  +VDPFD  CR  F+ +TAFS K  +K  V+ CDF 
Sbjct: 137  VEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIDKKAVIKCDFQ 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            + F V +I EI++  D S L+V+  L+SSP + YRTADDDI  +VPFDLLDDDDPWIRTT
Sbjct: 197  VGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN+Y+IS+  RH  +L KAM YLK +++    L  +  +R + EPD+GM 
Sbjct: 257  DFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQTLRTQNEPDFGMP 316

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+ FF +  ++ I+F+ MFLVNA++HKGI + H LS+ FFE LR   +ELN+AAL+H+ 
Sbjct: 317  MSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKHLC 376

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+RPVFD  ++LK VQEWLL+NP                +LV+TP+KAYC+PP VELSN
Sbjct: 377  SYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPSKAYCIPPEVELSN 436

Query: 1081 RVLRKYK 1101
            RVLRK++
Sbjct: 437  RVLRKFR 443



 Score =  393 bits (1010), Expect(2) = 0.0
 Identities = 195/303 (64%), Positives = 237/303 (78%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N YVAP+VKE+TS S+SQKT ++ RV TI+++GF+ CGRKY+FLAFS NQLRD SAWFFA
Sbjct: 468  NYYVAPIVKEITSNSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFA 527

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            ED+ ++  DI  WMG+F  RNVAK AARMG CFSSTY T+EV + EVNS L DV+RN Y+
Sbjct: 528  EDK-IRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYI 586

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG IT DLA EVAEKL+L +N P AYQIR+AG KGV+A WP K DG+RLSLRPSMN
Sbjct: 587  FSDGIGVITHDLAREVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMN 645

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S+HNI+E+ +WTRFQPGFLNRQIITLLSAL VPD+ F +MQ++M+ KL+QML   D+
Sbjct: 646  KFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADI 705

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+E GN A +ML  GF P TEPHL  ML+S R A L GL EK      +  G
Sbjct: 706  AFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIF--VSSG 763

Query: 2049 SWV 2057
             W+
Sbjct: 764  RWL 766


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  415 bits (1066), Expect(2) = 0.0
 Identities = 203/367 (55%), Positives = 263/367 (71%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF SP++VT ALNA+G  +L     PLKVS GPE+P+F+N+RRRT  PFK S+V 
Sbjct: 77   PHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQRRRTTTPFKMSDVL 136

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V+IGTLVS  EF+V W+ P  GV  +VDPFD  CR  F+ +TAFS K  EK  V+ CDF 
Sbjct: 137  VEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIEKKAVIKCDFQ 196

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            + F V +I EIK+  D S L+V+  L+SSP + YRTADDDI  +VPFDLLDDDDPWIRTT
Sbjct: 197  VGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTT 256

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            DFT  GAIG+CN+Y+IS+  RH  +L KAM YLK +++    L  +  +R   EPD+G+ 
Sbjct: 257  DFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQTLRTLNEPDFGVP 316

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+ FF I  ++ I+F+ MFLVNA++HKGI + H LS+ FFE L+   +ELN+AAL+H+ 
Sbjct: 317  MSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQPKELNVAALKHLC 376

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+RPVFD  ++LK VQEWLL+NP                +LVITP+KAYC+PP VELSN
Sbjct: 377  SYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSN 436

Query: 1081 RVLRKYK 1101
            RVLRK++
Sbjct: 437  RVLRKFR 443



 Score =  392 bits (1007), Expect(2) = 0.0
 Identities = 198/313 (63%), Positives = 240/313 (76%), Gaps = 2/313 (0%)
 Frame = +3

Query: 1149 NSYVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFA 1328
            N YVAP+VKE+TS S+SQ+T ++ RV TI++ GF+ CGRKY+FLAFS NQLRD SAWFFA
Sbjct: 468  NYYVAPIVKEITSNSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFA 527

Query: 1329 EDETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYV 1508
            ED+ ++  DI  WMG+F  RNVAK AARMG CFSSTY T+EV + EVNS L DV+RN Y+
Sbjct: 528  EDK-IRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYI 586

Query: 1509 FSDGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMN 1688
            FSDGIG IT DLA EVAEKL+L +N P AYQIR+AG KGV+A WP K DG+RLSLRPSMN
Sbjct: 587  FSDGIGVITHDLAREVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMN 645

Query: 1689 KFISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDV 1868
            KF S+HNI+E+ +WTRFQPGFLNRQIITLLSAL VPD+ F +MQ++M+ KL+QML   D+
Sbjct: 646  KFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADI 705

Query: 1869 AFEILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGG 2048
            AF++L+ SC+E GN A +ML  GF P TEPHL  ML+S R A L GL EK      +  G
Sbjct: 706  AFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIF--VSSG 763

Query: 2049 SWV--ALMSSGYL 2081
             W+   L  SG L
Sbjct: 764  RWLMGVLDESGVL 776


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  407 bits (1047), Expect(2) = 0.0
 Identities = 200/367 (54%), Positives = 260/367 (70%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF S ++   AL AAG  EL+    PL VSLGPE+P+ +N+RRRT  PFKFS+V 
Sbjct: 76   PHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVS 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V++G LVSKH+F VGW+ P +GVD +VDPF+ TC+ILFT++T FS +   +  ++ C+F 
Sbjct: 136  VEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFRGEARHAIIKCNFK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI EIK+ KD  SL+++ QL+SSP + YRTADDDI  +V FDLLDDDD WIRTT
Sbjct: 196  IEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            D T  GAIG+CN Y+IS+  R+    EKAM Y    ++P   +  + M+R   EPD+G+ 
Sbjct: 256  DITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVS 315

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFC Q+ EGISF+ +FL NAV+HKGIV+ H +  EFF  LR H  E+N+AAL+HM+
Sbjct: 316  MSDPFFCFQN-EGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMF 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PV D  +KL  +Q+WLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSN 434

Query: 1081 RVLRKYK 1101
            RVLR YK
Sbjct: 435  RVLRNYK 441



 Score =  398 bits (1022), Expect(2) = 0.0
 Identities = 195/301 (64%), Positives = 237/301 (78%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V+E+TS S  Q+T++F RV +I+  GFHLCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
              ++V  I  WMG F +RNVAK AARMG CFSSTY T+EVPS EVNS+L D++RNGYVFS
Sbjct: 528  PKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG I+ DLA+EVAEKL L+ N P AYQIR+AGCKGV+ACWP K+DGIRLSLRPSM KF
Sbjct: 588  DGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V D  F  MQ  M+  LD+ML  +DVAF
Sbjct: 648  DSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            ++++ SC+E GNTA +ML AGF+PQ+EPHL  MLSSIR + L G L  K  +FV   G W
Sbjct: 708  DVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQL-GDLRNKARIFV-PSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  405 bits (1042), Expect(2) = 0.0
 Identities = 202/367 (55%), Positives = 261/367 (71%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF S ++   AL AAG  ELI    PL VSLGPE+P+ +N+RRRT  PFKFS+V 
Sbjct: 76   PHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVS 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V++G LVSK +F VGW+ P +GVD  VDPF+ TC+ILFT++TAFS +   +  ++ C+F 
Sbjct: 136  VEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI EIK+ KD +SL+++ QL+SSP + YRTADDDI  +V FDLLDDDD WIRTT
Sbjct: 196  IEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            D T  GAIG+CN Y+IS+  R+    EKAM Y    ++P   +  + M+R + EPD+G+ 
Sbjct: 256  DITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVKDEPDFGVS 315

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFC Q+ EGISF+ MFLVNAV+HKGIV+ H ++ EFF  LR    E+N AAL+HM+
Sbjct: 316  MSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMF 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PV D  +KL  +Q+WLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSN 434

Query: 1081 RVLRKYK 1101
            RVLR YK
Sbjct: 435  RVLRNYK 441



 Score =  398 bits (1022), Expect(2) = 0.0
 Identities = 195/301 (64%), Positives = 238/301 (79%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V+E+TS S  Q+T++F RV +I+  GFHLCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
              ++V  I  WMG F +RNVAK AARMG CFSSTY T+EVPS+EVNS+L D++RNGYVFS
Sbjct: 528  PKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG I+ DLA+EVAEKL L+ N P AYQIR+AGCKGV+ACWP K+DGIRLSLRPSM KF
Sbjct: 588  DGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V D  F  MQ  M+  LD+ML  +DVAF
Sbjct: 648  DSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            ++++ SC+E GNTA +ML AGF+PQ+EPHL  MLSSIR + L G L  K  +FV   G W
Sbjct: 708  DVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQL-GDLRNKARIFV-PSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  406 bits (1044), Expect(2) = 0.0
 Identities = 200/367 (54%), Positives = 262/367 (71%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF S ++   AL AAG  ELI    PL VSLGPE+P+ +N+RRRT  PFKFS+V 
Sbjct: 76   PHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVS 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            +++G LVSK +F VGW+ P +GVD +VDPF+  C+ILFT++TAFS +   +  ++ C+F 
Sbjct: 136  IEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFRGEARHAIIKCNFK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI EIK+ KD +SL+++ QL+SSP + YRTADDDI  +V FDLLDDDD WIRTT
Sbjct: 196  IEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            D T  GAIG+CN Y+IS+  R+    EKAM Y    ++P   +  + M+R   EPD+G+ 
Sbjct: 256  DITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVS 315

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFC Q+ EGISF+ MFLVNAV+HKGIV+ H ++ EFF  LR H  E+N+AAL+HM+
Sbjct: 316  MSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMF 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PV D  +KL  +++WLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSN 434

Query: 1081 RVLRKYK 1101
            RVLR YK
Sbjct: 435  RVLRNYK 441



 Score =  397 bits (1019), Expect(2) = 0.0
 Identities = 195/301 (64%), Positives = 237/301 (78%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V+E+TS S  Q+T++F RV +I+  GFHLCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
              ++V  I  WMG F +RNVAK AARMG CFSSTY T+EVPS EVNS+L D++RNGYVFS
Sbjct: 528  PKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG I+ DLA+EVAEKL L+ N P AYQIR+AGCKGV+ACWP K+DGIRLSLRPSM KF
Sbjct: 588  DGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V D  F  MQ  M+  LD+ML  +DVAF
Sbjct: 648  DSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            ++++ SC+E GNTA +ML AGF+PQ+EPHL  MLSSIR + L G L  K  +FV   G W
Sbjct: 708  DVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQL-GDLRNKARIFV-PSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  412 bits (1058), Expect(2) = 0.0
 Identities = 204/367 (55%), Positives = 265/367 (72%)
 Frame = +1

Query: 1    PHAFVHFVSPKAVTKALNAAGRGELIFNGNPLKVSLGPESPFFVNKRRRTIEPFKFSNVC 180
            PHAFVHF S ++   AL AAG  ELI    PL VSLGPE+P+ +N+RRRT  PFKFS+V 
Sbjct: 76   PHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVS 135

Query: 181  VQIGTLVSKHEFWVGWKAPASGVDLVVDPFDNTCRILFTEETAFSLKDAEKSTVLNCDFM 360
            V++G LVSK +F VGW+ P +GVD +VDPF+ TC+ILFT++TAFS +   +  ++ C+F 
Sbjct: 136  VEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFK 195

Query: 361  LEFPVTEITEIKQSKDLSSLIVVFQLSSSPSLSYRTADDDIYITVPFDLLDDDDPWIRTT 540
            +EF V EI EIK+ KD +SL+++FQL+SSP + YRTADDDI  +V FDLLDDDD WIRTT
Sbjct: 196  IEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTT 255

Query: 541  DFTLHGAIGKCNYYKISMSARHWLRLEKAMDYLKDRQIPNDFLEKQLMVRDEPEPDYGMR 720
            D T  GAIG+CN Y+IS+  R+    EKAM Y   R++P   +  + M+R + EPD+G+ 
Sbjct: 256  DITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVS 315

Query: 721  ISNPFFCIQHKEGISFETMFLVNAVMHKGIVSHHHLSEEFFE*LRRHTRELNIAALRHMY 900
            +S+PFFC Q+ EGISF+ MFLVNAV+HKGIV+ H ++ EFF  LR    E+N+AAL+HM+
Sbjct: 316  MSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMF 374

Query: 901  SYRRPVFDVCEKLKHVQEWLLQNPNXXXXXXXXXXXXXXXKLVITPTKAYCLPPVVELSN 1080
            SY+ PV D  +KL  +Q+WLL+NP                +LVITPTKAYCLPP VELSN
Sbjct: 375  SYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSN 434

Query: 1081 RVLRKYK 1101
            RVLR YK
Sbjct: 435  RVLRNYK 441



 Score =  390 bits (1001), Expect(2) = 0.0
 Identities = 193/301 (64%), Positives = 234/301 (77%)
 Frame = +3

Query: 1155 YVAPVVKEVTSKSYSQKTSVFNRVNTIMKDGFHLCGRKYTFLAFSPNQLRDHSAWFFAED 1334
            Y A +V+E+TS S  Q+T++F RV +I+  GFHLCGRKY+FLAFS NQLRD SAWFFAED
Sbjct: 468  YAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAED 527

Query: 1335 ETLKVIDITRWMGEFKDRNVAKYAARMGLCFSSTYTTIEVPSKEVNSKLQDVKRNGYVFS 1514
              ++V  I  WMG F +RNVAK AARMG CFSSTY T+EVPS EVNS+L D++RNGYVFS
Sbjct: 528  PKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFS 587

Query: 1515 DGIGKITPDLAMEVAEKLQLTENSPGAYQIRFAGCKGVIACWPGKDDGIRLSLRPSMNKF 1694
            DGIG I+ DLA+EVAEKL L  N P AYQIR+AG KGV+ACWP K+DGI LSLRPSM KF
Sbjct: 588  DGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKF 647

Query: 1695 ISSHNIIEVASWTRFQPGFLNRQIITLLSALNVPDDAFSRMQDSMVCKLDQMLESTDVAF 1874
             S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V D  F  MQ  M+  LD+ML  +DVAF
Sbjct: 648  DSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAF 707

Query: 1875 EILSFSCSEEGNTAVMMLGAGFEPQTEPHL*RMLSSIRVALLRGLLEKKGFLFVLEGGSW 2054
            ++++ SC+E GNTA +ML AGF+PQ+EPHL  MLSSIR + L G L  K  +FV   G W
Sbjct: 708  DVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQL-GDLRNKARIFV-PSGRW 765

Query: 2055 V 2057
            +
Sbjct: 766  L 766