BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00013646
         (541 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003538579.1| PREDICTED: photosystem II core complex prote...    51   2e-08
ref|XP_004310006.1| PREDICTED: photosystem II core complex prote...    45   7e-08

>ref|XP_003538579.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Glycine max]
          Length = 197

 Score = 51.2 bits (121), Expect(2) = 2e-08
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = +1

Query: 373 EGDNRGXXXXXXXXXXXXWVLYNILQPALNQINKMRNTK 489
           EGDNRG            WVL+NILQPALNQ+N+MRN+K
Sbjct: 88  EGDNRGLALLLPLIPAIAWVLFNILQPALNQLNRMRNSK 126



 Score = 32.7 bits (73), Expect(2) = 2e-08
 Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = +2

Query: 239 SNKL-NPAKPPFKP-ISILSLQNLPKG 313
           S+KL NP  PP KP +S+ SLQNLPKG
Sbjct: 23  SHKLHNPKLPPSKPTLSLFSLQNLPKG 49


>ref|XP_004310006.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 193

 Score = 45.1 bits (105), Expect(2) = 7e-08
 Identities = 21/37 (56%), Positives = 23/37 (62%)
 Frame = +1

Query: 373 EGDNRGXXXXXXXXXXXXWVLYNILQPALNQINKMRN 483
           EGDNRG            WVL+NI QPALNQIN+M N
Sbjct: 81  EGDNRGLALLLPIIPAIAWVLFNIFQPALNQINRMVN 117



 Score = 37.4 bits (85), Expect(2) = 7e-08
 Identities = 20/35 (57%), Positives = 22/35 (62%), Gaps = 7/35 (20%)
 Frame = +2

Query: 230 KCLSNKLNPAK-------PPFKPISILSLQNLPKG 313
           KCLS   N AK        P KPIS+LS+QNLPKG
Sbjct: 15  KCLSTTTNSAKLPNLKPITPTKPISLLSIQNLPKG 49