BLASTX nr result
ID: Sinomenium22_contig00010254
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00010254
(524 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense] 339 2e-91
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] 288 4e-76
gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus] 286 3e-75
gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata] 265 6e-69
gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata] 260 1e-67
ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic... 253 2e-65
gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simpliciss... 252 4e-65
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]... 250 1e-64
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife... 250 1e-64
gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera] 250 1e-64
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ... 250 2e-64
gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense] 250 2e-64
gb|ABD93850.1| RNA polymerase beta chain [Sanguinaria canadensis] 250 2e-64
gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra] 247 1e-63
gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata] 245 5e-63
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ... 243 2e-62
gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides] 243 2e-62
gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis] 243 2e-62
ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occiden... 243 2e-62
ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis... 243 3e-62
>gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense]
Length = 294
Score = 339 bits (870), Expect = 2e-91
Identities = 172/174 (98%), Positives = 174/174 (100%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRN+PVGSGLIPVNRSNRTNL
Sbjct: 18 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNNPVGSGLIPVNRSNRTNL 77
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNSNNVTKKSIQIQ 360
NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNSNNVTKKSIQIQ
Sbjct: 78 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNSNNVTKKSIQIQ 137
Query: 361 KDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
KDTLLTIRNSLGPLGIVPKITNFYSFYHLIT+NQSLVNKYLLLDNLKQTFQVLK
Sbjct: 138 KDTLLTIRNSLGPLGIVPKITNFYSFYHLITHNQSLVNKYLLLDNLKQTFQVLK 191
>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
Length = 774
Score = 288 bits (738), Expect = 4e-76
Identities = 153/179 (85%), Positives = 160/179 (89%), Gaps = 5/179 (2%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
+ GSSIEGV ASFVEV+VKGLI+DFI+MD VK PISYTGKRNDPVGSGLI VNR +RTNL
Sbjct: 312 EKGSSIEGVRASFVEVKVKGLIRDFIKMDSVKPPISYTGKRNDPVGSGLISVNRPDRTNL 371
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLN---SNNVTKKSI 351
NPFFSK RIQQSLTQHQVTIRML NRNKECQSLIILSSSNC RIG N SNNVTKKSI
Sbjct: 372 NPFFSKERIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCSRIGPFNGLKSNNVTKKSI 431
Query: 352 QIQKDTLLTIRNSLGPLGIVP--KITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
QI+KDTLL I NSLGPLGIVP KITNFYSFYHLIT+NQ LVNKYLLLDNLKQTFQVLK
Sbjct: 432 QIKKDTLLKIMNSLGPLGIVPKMKITNFYSFYHLITHNQILVNKYLLLDNLKQTFQVLK 490
>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
Length = 865
Score = 286 bits (731), Expect = 3e-75
Identities = 152/179 (84%), Positives = 160/179 (89%), Gaps = 5/179 (2%)
Frame = +1
Query: 1 KNGSSI--EGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRT 174
K GSSI EGVHASFVEVRVKGLI+DFI+MDLVK PISYTGKRN+PVGSGLI VNRS+RT
Sbjct: 398 KKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNRSDRT 457
Query: 175 NLNPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLN---SNNVTKK 345
NLNPFFSKARIQQSLTQHQVTIRML NRNKECQSLIILSSSNC RIG N SNNVTKK
Sbjct: 458 NLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCSRIGPFNGLKSNNVTKK 517
Query: 346 SIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
SIQ++K TLL IRNSLGPLGIVPK FYSFYHLIT+NQ L+NKYLLLDNLKQ FQVLK
Sbjct: 518 SIQMKKATLLKIRNSLGPLGIVPKNYEFYSFYHLITHNQILLNKYLLLDNLKQAFQVLK 576
>gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]
Length = 861
Score = 265 bits (676), Expect = 6e-69
Identities = 140/177 (79%), Positives = 153/177 (86%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSS E VHASFV+VR+ LI+DFIRMDLVKS ISYTGKRND GSGLIP N S+RTNL
Sbjct: 398 KNGSSREEVHASFVQVRLNDLIRDFIRMDLVKSLISYTGKRNDSAGSGLIPANGSDRTNL 457
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLN---SNNVTKKSI 351
NPF+SK RIQQSLTQH+ TIR L NRNKECQSLIILSSSNC R+G N +NNVTK+S
Sbjct: 458 NPFYSKTRIQQSLTQHKGTIRTLLNRNKECQSLIILSSSNCSRMGPFNGLKNNNVTKES- 516
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D+LL IRNSLGPLGIVPKITNFYSFYHLIT+NQ LVNKYLLLDNLK TFQVLK
Sbjct: 517 -IKRDSLLPIRNSLGPLGIVPKITNFYSFYHLITHNQILVNKYLLLDNLKHTFQVLK 572
>gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]
Length = 861
Score = 260 bits (665), Expect = 1e-67
Identities = 139/177 (78%), Positives = 152/177 (85%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSS E VHASFV+VR+ LI+DFIRMDLVKS ISYTGKRND SGLIP N S+RTNL
Sbjct: 398 KNGSSREEVHASFVQVRLNDLIRDFIRMDLVKSLISYTGKRNDSAWSGLIPANGSDRTNL 457
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLN---SNNVTKKSI 351
NPF+SKARIQQSLTQH+ TIR L NRNKECQSLIILSSSNC R+G N +NNVTK+S
Sbjct: 458 NPFYSKARIQQSLTQHKGTIRTLLNRNKECQSLIILSSSNCSRMGPFNGLKNNNVTKES- 516
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D+LL IRNSLGPLGI PKITNFYSFYHLIT+NQ LVNKYLLLDNLK TFQVLK
Sbjct: 517 -IKRDSLLPIRNSLGPLGIGPKITNFYSFYHLITHNQILVNKYLLLDNLKHTFQVLK 572
>ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054460|gb|ABI49853.1| RNA polymerase beta'' subunit
[Nandina domestica]
Length = 1377
Score = 253 bits (646), Expect = 2e-65
Identities = 137/177 (77%), Positives = 148/177 (83%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSS+E VHASFVEVRV LI+DFIRMDLVKSPISYT KRN P GS LI N S+ TNL
Sbjct: 839 KNGSSMEEVHASFVEVRVNNLIRDFIRMDLVKSPISYTRKRNAPAGSELILANGSDYTNL 898
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIG---RLNSNNVTKKSI 351
NPF+SKARIQQSLTQHQ TIR L NRNKECQSLI LSSSNCFRIG L NN+TKKS
Sbjct: 899 NPFYSKARIQQSLTQHQGTIRTLLNRNKECQSLIFLSSSNCFRIGPFKGLKYNNMTKKS- 957
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
++D+LL IRNSLGPLGIVPKI NF SFY+LIT+NQ L+NKYLLLDNLKQTFQ LK
Sbjct: 958 -NKRDSLLLIRNSLGPLGIVPKIANFSSFYYLITHNQILINKYLLLDNLKQTFQKLK 1013
>gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simplicissima]
Length = 861
Score = 252 bits (643), Expect = 4e-65
Identities = 135/177 (76%), Positives = 147/177 (83%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSSIE VHASFVEVRV LI+ FIRMDLVK PI YT KRNDP GSGLIP N S+RTNL
Sbjct: 398 KNGSSIEEVHASFVEVRVNNLIRYFIRMDLVKPPILYTRKRNDPAGSGLIPANGSDRTNL 457
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTKKSI 351
NPF+SKARI+QSLT++Q TIR L NRNKECQSLI LSSSNCFRIG N NNVTKKS
Sbjct: 458 NPFYSKARIKQSLTRYQGTIRTLLNRNKECQSLITLSSSNCFRIGPFNGLKYNNVTKKS- 516
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
++D LL IRNSLGPLGIVPKI N +SFY+LIT+NQ LVNKY LLDN K+TFQVLK
Sbjct: 517 -NKRDPLLPIRNSLGPLGIVPKIANCFSFYYLITHNQILVNKYSLLDNFKETFQVLK 572
>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
[Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
Length = 1390
Score = 250 bits (639), Expect = 1e-64
Identities = 135/180 (75%), Positives = 148/180 (82%), Gaps = 6/180 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHAS VEVR LI+DFIRMDL KSPISY GKRNDP GSGLI NRS+RTN
Sbjct: 849 KKGSSIEEVHASLVEVRANDLIRDFIRMDLAKSPISYIGKRNDPAGSGLISDNRSDRTNR 908
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIG-----RLNSNNVTKK 345
NPF+SKARIQQSL+QHQ TIR L NRNKECQSLIILSSSNC RIG L +NVTK+
Sbjct: 909 NPFYSKARIQQSLSQHQGTIRTLLNRNKECQSLIILSSSNCSRIGIGPFNGLKYHNVTKE 968
Query: 346 SIQIQKDTLLTIRNSLGPLGIVPKITNFY-SFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
S I++D L++IRNS GPLG VPKI NFY S+YHLIT+NQ L+NKYLLLDNLKQTFQVLK
Sbjct: 969 S--IKRDPLISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNLKQTFQVLK 1026
>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
[Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
polymerase beta'' subunit protein [Nelumbo nucifera]
gi|383286787|gb|AFH01437.1| RNA polymerase beta'' subunit
(chloroplast) [Nelumbo nucifera]
gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
(chloroplast) [Nelumbo nucifera]
Length = 1390
Score = 250 bits (639), Expect = 1e-64
Identities = 135/180 (75%), Positives = 148/180 (82%), Gaps = 6/180 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHAS VEVR LI+DFIRMDL KSPISY GKRNDP GSGLI NRS+RTN
Sbjct: 849 KKGSSIEEVHASLVEVRANDLIRDFIRMDLAKSPISYIGKRNDPAGSGLISDNRSDRTNR 908
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIG-----RLNSNNVTKK 345
NPF+SKARIQQSL+QHQ TIR L NRNKECQSLIILSSSNC RIG L +NVTK+
Sbjct: 909 NPFYSKARIQQSLSQHQGTIRTLLNRNKECQSLIILSSSNCSRIGIGPFNGLKYHNVTKE 968
Query: 346 SIQIQKDTLLTIRNSLGPLGIVPKITNFY-SFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
S I++D L++IRNS GPLG VPKI NFY S+YHLIT+NQ L+NKYLLLDNLKQTFQVLK
Sbjct: 969 S--IKRDPLISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNLKQTFQVLK 1026
>gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]
Length = 866
Score = 250 bits (639), Expect = 1e-64
Identities = 135/180 (75%), Positives = 148/180 (82%), Gaps = 6/180 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHAS VEVR LI+DFIRMDL KSPISY GKRNDP GSGLI NRS+RTN
Sbjct: 400 KKGSSIEEVHASLVEVRANDLIRDFIRMDLAKSPISYIGKRNDPAGSGLISDNRSDRTNR 459
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIG-----RLNSNNVTKK 345
NPF+SKARIQQSL+QHQ TIR L NRNKECQSLIILSSSNC RIG L +NVTK+
Sbjct: 460 NPFYSKARIQQSLSQHQGTIRTLLNRNKECQSLIILSSSNCSRIGIGPFNGLKYHNVTKE 519
Query: 346 SIQIQKDTLLTIRNSLGPLGIVPKITNFY-SFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
S I++D L++IRNS GPLG VPKI NFY S+YHLIT+NQ L+NKYLLLDNLKQTFQVLK
Sbjct: 520 S--IKRDPLISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNLKQTFQVLK 577
>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
gi|479279193|gb|AGJ72047.1| RNA polymerase beta'' subunit
(chloroplast) [Tetracentron sinense]
Length = 1378
Score = 250 bits (638), Expect = 2e-64
Identities = 133/177 (75%), Positives = 146/177 (82%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHASFVEVR GLI+DFIRMDLVKSPISYTGKRND GSGLIP N S+R N+
Sbjct: 848 KKGSSIEEVHASFVEVRANGLIRDFIRMDLVKSPISYTGKRNDLSGSGLIPDNGSDRINI 907
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTKKSI 351
NPF+SKA IQQ L+QH TIR L NRN ECQSLIILSSSNC R+G +NVTK+S
Sbjct: 908 NPFYSKASIQQLLSQHPGTIRTLLNRNNECQSLIILSSSNCSRMGPFKGFKYHNVTKES- 966
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D L+ IR SLGPLGIVPKI NFYSFYHLIT+NQ LVNKYLLLDNLKQTFQV+K
Sbjct: 967 -IKRDPLIPIRKSLGPLGIVPKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQVIK 1022
>gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense]
Length = 792
Score = 250 bits (638), Expect = 2e-64
Identities = 133/177 (75%), Positives = 146/177 (82%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHASFVEVR GLI+DFIRMDLVKSPISYTGKRND GSGLIP N S+R N+
Sbjct: 329 KKGSSIEEVHASFVEVRANGLIRDFIRMDLVKSPISYTGKRNDLSGSGLIPDNGSDRINI 388
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTKKSI 351
NPF+SKA IQQ L+QH TIR L NRN ECQSLIILSSSNC R+G +NVTK+S
Sbjct: 389 NPFYSKASIQQLLSQHPGTIRTLLNRNNECQSLIILSSSNCSRMGPFKGFKYHNVTKES- 447
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D L+ IR SLGPLGIVPKI NFYSFYHLIT+NQ LVNKYLLLDNLKQTFQV+K
Sbjct: 448 -IKRDPLIPIRKSLGPLGIVPKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQVIK 503
>gb|ABD93850.1| RNA polymerase beta chain [Sanguinaria canadensis]
Length = 853
Score = 250 bits (638), Expect = 2e-64
Identities = 137/180 (76%), Positives = 149/180 (82%), Gaps = 6/180 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGL--IPVNRSNRT 174
K GSSIE V ASFVEVRV LI+DFIRMDLVKSPISYTGKRNDP GSGL IP N S+RT
Sbjct: 394 KKGSSIEEVDASFVEVRVNNLIRDFIRMDLVKSPISYTGKRNDPGGSGLRLIPANGSDRT 453
Query: 175 NLNPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLN----SNNVTK 342
NLNPF+SKAR+QQS TQHQ TIR L NRNKE QSLIILSSSNCFR+G N +NNVTK
Sbjct: 454 NLNPFYSKARLQQSFTQHQGTIRTLLNRNKESQSLIILSSSNCFRMGPFNGVKYNNNVTK 513
Query: 343 KSIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
+S ++ D L+ IRNSLGPLGIVPKI NF S YHLI++NQ LVNKYLLLDNLKQT QVLK
Sbjct: 514 ES--MKGDPLIPIRNSLGPLGIVPKIANFSSSYHLISHNQILVNKYLLLDNLKQTLQVLK 571
>gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]
Length = 796
Score = 247 bits (631), Expect = 1e-63
Identities = 137/181 (75%), Positives = 146/181 (80%), Gaps = 7/181 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNR--- 171
KNGSSIE VHASFVEVRV LI+DFIRMDLVKSPISYTGKRNDP GSGL P N S+R
Sbjct: 398 KNGSSIEEVHASFVEVRVNDLIRDFIRMDLVKSPISYTGKRNDPAGSGLSPDNGSDRNRT 457
Query: 172 -TNLNPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVT 339
TNLN F+SKARIQQ LT HQ TIR L N N ECQSLIILSSSNC R+G S NNVT
Sbjct: 458 NTNLNSFYSKARIQQYLTHHQGTIRTLLNINTECQSLIILSSSNCSRMGPFKSLKYNNVT 517
Query: 340 KKSIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVL 519
KKS I++D L+ IRNS+GPLGIVPKI NFYS HLIT+NQ LVNKYLLLDNLKQTF VL
Sbjct: 518 KKS--IKRDPLIPIRNSMGPLGIVPKIANFYSSSHLITHNQILVNKYLLLDNLKQTFHVL 575
Query: 520 K 522
K
Sbjct: 576 K 576
>gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]
Length = 861
Score = 245 bits (625), Expect = 5e-63
Identities = 132/177 (74%), Positives = 142/177 (80%), Gaps = 3/177 (1%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE V ASFVEVR+ LI+DFIRMDL KS IS TGKRNDP GSGLIP N S+ TNL
Sbjct: 398 KTGSSIEEVRASFVEVRLNDLIRDFIRMDLAKSLISSTGKRNDPAGSGLIPDNGSDCTNL 457
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTKKSI 351
NPF+ KARI QSL QH TIR L NRNKECQS IILSSSNC R+G N NNVTK+
Sbjct: 458 NPFYCKARIPQSLNQHHGTIRTLLNRNKECQSFIILSSSNCSRMGPFNGLKYNNVTKE-- 515
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D LL IRNSLGPLGIVPKI NFYSFYHLIT+NQ L+NKY LLDNLKQTFQVLK
Sbjct: 516 LIKRDPLLPIRNSLGPLGIVPKIANFYSFYHLITHNQILINKYFLLDNLKQTFQVLK 572
>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
beta'' subunit (chloroplast) [Trochodendron aralioides]
gi|479279286|gb|AGJ72139.1| RNA polymerase beta'' subunit
(chloroplast) [Trochodendron aralioides]
Length = 1381
Score = 243 bits (621), Expect = 2e-62
Identities = 132/180 (73%), Positives = 146/180 (81%), Gaps = 6/180 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHASFVEVR GLI+DFIRMDLVKSPISYTGKRND GSGLIP N S+R N+
Sbjct: 848 KKGSSIEEVHASFVEVRANGLIRDFIRMDLVKSPISYTGKRNDLSGSGLIPDNGSDRINI 907
Query: 181 NPF---FSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTK 342
NPF +SKA IQQSL+QHQ TIR L NRN ECQSLIILSSSNC R+G +NVTK
Sbjct: 908 NPFYSIYSKASIQQSLSQHQGTIRTLLNRNNECQSLIILSSSNCSRMGPFKGFKYHNVTK 967
Query: 343 KSIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
+S I++D L+ IR SLGPLG V KI NFYSFYHLIT+NQ LVNKYLLLDNLKQTFQ++K
Sbjct: 968 ES--IKRDPLIPIRKSLGPLGTVHKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQIIK 1025
>gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides]
Length = 865
Score = 243 bits (621), Expect = 2e-62
Identities = 132/180 (73%), Positives = 146/180 (81%), Gaps = 6/180 (3%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHASFVEVR GLI+DFIRMDLVKSPISYTGKRND GSGLIP N S+R N+
Sbjct: 399 KKGSSIEEVHASFVEVRANGLIRDFIRMDLVKSPISYTGKRNDLSGSGLIPDNGSDRINI 458
Query: 181 NPF---FSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTK 342
NPF +SKA IQQSL+QHQ TIR L NRN ECQSLIILSSSNC R+G +NVTK
Sbjct: 459 NPFYSIYSKASIQQSLSQHQGTIRTLLNRNNECQSLIILSSSNCSRMGPFKGFKYHNVTK 518
Query: 343 KSIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
+S I++D L+ IR SLGPLG V KI NFYSFYHLIT+NQ LVNKYLLLDNLKQTFQ++K
Sbjct: 519 ES--IKRDPLIPIRKSLGPLGTVHKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQIIK 576
>gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis]
Length = 863
Score = 243 bits (621), Expect = 2e-62
Identities = 131/178 (73%), Positives = 150/178 (84%), Gaps = 4/178 (2%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSSI+ VHASFVEVR LIQDFIRMDLVKS IS+TGKRNDP GSGLIP N S+RTN+
Sbjct: 399 KNGSSIKEVHASFVEVRANDLIQDFIRMDLVKSTISHTGKRNDPAGSGLIPDNGSDRTNI 458
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTKKSI 351
NPF+SKARIQQSL++HQ T+R L NRNKECQSLIILSSSNC ++G LN+ +NVTK+S
Sbjct: 459 NPFYSKARIQQSLSRHQGTLRSLLNRNKECQSLIILSSSNCSQMGPLNTLKYHNVTKES- 517
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFY-SFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D + IRNSLGPLG VPKITNFY S+Y LIT+NQ LV+KYLLL NLKQT QV K
Sbjct: 518 -IKRDPPIPIRNSLGPLGTVPKITNFYSSYYQLITHNQILVSKYLLLANLKQTLQVFK 574
>ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054374|gb|ABI49768.1| RNA polymerase beta'' subunit
[Platanus occidentalis]
Length = 1387
Score = 243 bits (621), Expect = 2e-62
Identities = 131/178 (73%), Positives = 150/178 (84%), Gaps = 4/178 (2%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
KNGSSI+ VHASFVEVR LIQDFIRMDLVKS IS+TGKRNDP GSGLIP N S+RTN+
Sbjct: 848 KNGSSIKEVHASFVEVRANDLIQDFIRMDLVKSTISHTGKRNDPAGSGLIPDNGSDRTNI 907
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIGRLNS---NNVTKKSI 351
NPF+SKARIQQSL++HQ T+R L NRNKECQSLIILSSSNC ++G LN+ +NVTK+S
Sbjct: 908 NPFYSKARIQQSLSRHQGTLRSLLNRNKECQSLIILSSSNCSQMGPLNTLKYHNVTKES- 966
Query: 352 QIQKDTLLTIRNSLGPLGIVPKITNFY-SFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
I++D + IRNSLGPLG VPKITNFY S+Y LIT+NQ LV+KYLLL NLKQT QV K
Sbjct: 967 -IKRDPPIPIRNSLGPLGTVPKITNFYSSYYQLITHNQILVSKYLLLANLKQTLQVFK 1023
>ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
gi|226933872|gb|ACO92005.1| RNA polymerase beta'' subunit
[Megaleranthis saniculifolia]
Length = 1383
Score = 243 bits (619), Expect = 3e-62
Identities = 131/179 (73%), Positives = 147/179 (82%), Gaps = 5/179 (2%)
Frame = +1
Query: 1 KNGSSIEGVHASFVEVRVKGLIQDFIRMDLVKSPISYTGKRNDPVGSGLIPVNRSNRTNL 180
K GSSIE VHASFVEVRV LI+DFIR+DLVK PISYT KRND GSGLI N S+RTNL
Sbjct: 841 KKGSSIEEVHASFVEVRVNDLIRDFIRIDLVKLPISYTRKRNDLAGSGLISANGSDRTNL 900
Query: 181 NPFFSKARIQQSLTQHQVTIRMLRNRNKECQSLIILSSSNCFRIG-----RLNSNNVTKK 345
NPF+SKARI+Q L +HQ TIR L NRNKECQSLI LSSSNCFRIG + N+NN+TKK
Sbjct: 901 NPFYSKARIKQLLIRHQGTIRTLLNRNKECQSLITLSSSNCFRIGLFNGLKYNNNNMTKK 960
Query: 346 SIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLITYNQSLVNKYLLLDNLKQTFQVLK 522
S + D LL IRN LGPLGIVPKIT+F+SFY+LIT+NQ LVNK+ L+DNLKQTFQVLK
Sbjct: 961 S--KKGDPLLPIRNLLGPLGIVPKITHFFSFYYLITHNQILVNKHSLIDNLKQTFQVLK 1017