BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00007922
         (1587 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   202   e-102
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              202   e-102
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]     183   1e-90
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun...   183   2e-89
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   179   5e-89
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   178   8e-89
ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [A...   186   7e-88
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,...   178   2e-86
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   177   2e-84
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr...   174   7e-84
ref|XP_006287834.1| hypothetical protein CARUB_v10001054mg [Caps...   175   2e-83
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu...   180   2e-82
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   173   2e-80
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu...   174   2e-80
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   170   4e-79
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,...   170   7e-79
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,...   168   3e-77
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,...   168   3e-77
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [...   182   2e-76
ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phas...   173   3e-76

>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  202 bits (514), Expect(2) = e-102
 Identities = 103/141 (73%), Positives = 118/141 (83%)
 Frame = -2

Query: 1106 SRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRA 927
            S  LT  EEAEF L +KE A LE A+RR+ ETRE EPTS+Q AE VG+KR SL+K L   
Sbjct: 127  SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 186

Query: 926  RESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVY 747
            RESRERIN SYRRLV SIA  YQGKGLSL+DLIQEGSIGLLRGAE+FDP +GYKLSTYVY
Sbjct: 187  RESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVY 246

Query: 746  WWIKQAIIRAVSSKSRLIRLP 684
            WWI+QAI+RA+++KSR+IRLP
Sbjct: 247  WWIRQAIVRAIANKSRIIRLP 267



 Score =  198 bits (503), Expect(2) = e-102
 Identities = 103/158 (65%), Positives = 127/158 (80%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           S+CEMVAKIAEA TVLSRRL R PTY+EIA  +DV+VS V+L+ ERS  P+S+D+ +  +
Sbjct: 269 SICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQ 328

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQEII GP+ET P+ MV R+L+KQEV++ L TL EREA ILRLYFG NGE   SFE
Sbjct: 329 GCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSFE 388

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           EIGRLM LSRERVRQI+ IAL+KLR  + V+ L++Y+M
Sbjct: 389 EIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 426


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  202 bits (514), Expect(2) = e-102
 Identities = 103/141 (73%), Positives = 118/141 (83%)
 Frame = -2

Query: 1106 SRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRA 927
            S  LT  EEAEF L +KE A LE A+RR+ ETRE EPTS+Q AE VG+KR SL+K L   
Sbjct: 20   SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 79

Query: 926  RESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVY 747
            RESRERIN SYRRLV SIA  YQGKGLSL+DLIQEGSIGLLRGAE+FDP +GYKLSTYVY
Sbjct: 80   RESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVY 139

Query: 746  WWIKQAIIRAVSSKSRLIRLP 684
            WWI+QAI+RA+++KSR+IRLP
Sbjct: 140  WWIRQAIVRAIANKSRIIRLP 160



 Score =  198 bits (503), Expect(2) = e-102
 Identities = 103/158 (65%), Positives = 127/158 (80%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           S+CEMVAKIAEA TVLSRRL R PTY+EIA  +DV+VS V+L+ ERS  P+S+D+ +  +
Sbjct: 162 SICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQ 221

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQEII GP+ET P+ MV R+L+KQEV++ L TL EREA ILRLYFG NGE   SFE
Sbjct: 222 GCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSFE 281

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           EIGRLM LSRERVRQI+ IAL+KLR  + V+ L++Y+M
Sbjct: 282 EIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 319


>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 422

 Score =  183 bits (465), Expect(2) = 1e-90
 Identities = 111/288 (38%), Positives = 161/288 (55%), Gaps = 1/288 (0%)
 Frame = -2

Query: 1544 VSMATICASSSNHSPTLPTISLYSVXXXXXXXXXXXXXXSHKHGLSLVSEDSLTXXXXXX 1365
            +++ T   SS +H P LPT+SL ++                K G++LVS D+L       
Sbjct: 1    MAVTTSMCSSPSHPPNLPTLSLPTIPAPSPS----------KVGVNLVSNDALIVAAAAE 50

Query: 1364 XXXXXXXXXXXXXXXVTSASALGEMSFGGEA-EIFICNSDGILGISTEXXXXXXXXXXXX 1188
                           +  A+++GE+  G ++ E+ +       G + E            
Sbjct: 51   AVTLARAAAKAARDALAEAASVGEVWSGNKSSELTMRRKKRKRGKTLELLDTDEKS---- 106

Query: 1187 XXXXXXXXXXXXXKDYNEQPWLVRPSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETR 1008
                          D  +  + + P    YL+  EEAE  L +KEGA+LE  + R+  + 
Sbjct: 107  --------------DGEDMRFSIGPMKLGYLSPREEAECCLILKEGAKLEATRLRMTNSE 152

Query: 1007 ESEPTSSQLAELVGLKRKSLEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLI 828
            + EPTS +LA+ +G++ +S++K L   RES+ERI+ SYRRLV S+A  YQGKGLS  DLI
Sbjct: 153  DHEPTSKELAKAMGMEMRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLI 212

Query: 827  QEGSIGLLRGAEKFDPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            QEGS+GLLRGA+KFDP++G KLSTYVYWWI+QAIIRA+ +KSR++RLP
Sbjct: 213  QEGSVGLLRGAQKFDPQRGNKLSTYVYWWIRQAIIRAIENKSRVVRLP 260



 Score =  179 bits (453), Expect(2) = 1e-90
 Identities = 93/156 (59%), Positives = 123/156 (78%), Gaps = 1/156 (0%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           +MC +VAK+ EAN VL++RL R PTY+EIA +V V VS V+L+ ER  PP+SLDR + +R
Sbjct: 262 NMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITER 321

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMT-LSEREAIILRLYFGFNGEITRSF 299
           G MTLQEII GPEE  PE MV ++L+KQE+++LL T LS+REA +LRL+FG +G+I  S 
Sbjct: 322 GCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLSC 381

Query: 298 EEIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRV 191
           EEIGRL+ LSRER+RQI+ IAL+KL+    VN+LR+
Sbjct: 382 EEIGRLLKLSRERIRQINGIALSKLQQTNIVNDLRI 417


>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
           gi|462415663|gb|EMJ20400.1| hypothetical protein
           PRUPE_ppa017025mg [Prunus persica]
          Length = 440

 Score =  183 bits (464), Expect(2) = 2e-89
 Identities = 93/157 (59%), Positives = 125/157 (79%)
 Frame = -3

Query: 652 MCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRG 473
           +C M+AKI +A   L++R  R P+++EIA ++ V+ S V+L+CERS PP+SLDR    RG
Sbjct: 284 VCGMMAKITKAQNSLNQRFQRLPSHDEIAEVIKVNASTVKLVCERSRPPISLDRVATVRG 343

Query: 472 SMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEE 293
           SMTLQEII GPEE  PE M+ R+L+KQEV++LL TLS+REA +LRL+FG NGE  +SFEE
Sbjct: 344 SMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSFEE 403

Query: 292 IGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           IGRL+ LSRERVRQI+ IAL+KLR  + ++NL++YI+
Sbjct: 404 IGRLLKLSRERVRQINGIALSKLRQTSILDNLKLYIV 440



 Score =  175 bits (443), Expect(2) = 2e-89
 Identities = 87/139 (62%), Positives = 112/139 (80%)
 Frame = -2

Query: 1100 YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRARE 921
            +L+  EEAE  L +KEGARLE  + R+ E ++ EPTS QLA+ +G+K +S++K L + RE
Sbjct: 143  HLSPREEAECCLSLKEGARLESERFRVVEAQKHEPTSKQLAKAMGMKMRSIDKVLCKRRE 202

Query: 920  SRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVYWW 741
            S+E+I  SYR LV S+A +YQGKGLS +DLIQEGSIGLLRGAEKFD  + +KLSTYVYWW
Sbjct: 203  SQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQEGSIGLLRGAEKFDHEREWKLSTYVYWW 262

Query: 740  IKQAIIRAVSSKSRLIRLP 684
            I+QAIIRA+ +KSR+IRLP
Sbjct: 263  IRQAIIRAIENKSRIIRLP 281


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Citrus sinensis]
          Length = 436

 Score =  179 bits (453), Expect(2) = 5e-89
 Identities = 96/158 (60%), Positives = 120/158 (75%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           SM  MVAKIAEAN VLSRRL R PT  EIA M+++ VS V+L  ER+  P+SLD  + D 
Sbjct: 279 SMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITDT 338

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQ+II GP+ET PE MV ++L+KQE+++LL TLSEREA ILRL+FG +G+   S +
Sbjct: 339 GCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCK 398

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           EIGRL+ LSRERVRQI  IALTKL+     NNL+VY++
Sbjct: 399 EIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436



 Score =  178 bits (451), Expect(2) = 5e-89
 Identities = 94/155 (60%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
 Frame = -2

Query: 1145 DYNEQPWLVRPSCSR-YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELV 969
            DYN    LV+   S  YLT  EEAE    +KEGA+LEEA++ + +  E E  S QLA+  
Sbjct: 127  DYN----LVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKAT 182

Query: 968  GLKRKSLEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEK 789
            G+K+  ++K L + RES+ERI  SYR LV SIA  YQGKGLSL+DLIQEGSIGLLRGA++
Sbjct: 183  GMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 242

Query: 788  FDPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            F+P +GYKLSTYVYWWIKQAIIR +++KSR IRLP
Sbjct: 243  FNPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLP 277


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
            gi|557541154|gb|ESR52198.1| hypothetical protein
            CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  178 bits (451), Expect(2) = 8e-89
 Identities = 94/155 (60%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
 Frame = -2

Query: 1145 DYNEQPWLVRPSCSR-YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELV 969
            DYN    LV+   S  YLT  EEAE    +KEGA+LEEA++ + +  E E  S QLA+  
Sbjct: 127  DYN----LVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKAT 182

Query: 968  GLKRKSLEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEK 789
            G+K+  ++K L + RES+ERI  SYR LV SIA  YQGKGLSL+DLIQEGSIGLLRGA++
Sbjct: 183  GMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 242

Query: 788  FDPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            F+P +GYKLSTYVYWWIKQAIIR +++KSR IRLP
Sbjct: 243  FNPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLP 277



 Score =  178 bits (451), Expect(2) = 8e-89
 Identities = 96/158 (60%), Positives = 120/158 (75%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           SM  MVAKIAEAN VLSRRL R PT  EIA M+++ VS V+L  ER+  P+SLD  + D 
Sbjct: 279 SMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITDT 338

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQ+II GP+ET PE MV ++L+KQE+++LL TLSEREA ILRL+FG +G+   S +
Sbjct: 339 GCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCK 398

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           EIGRL+ LSRERVRQI  IALTKL+     NNL+VY++
Sbjct: 399 EIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436


>ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
            gi|548854777|gb|ERN12687.1| hypothetical protein
            AMTR_s00025p00248060 [Amborella trichopoda]
          Length = 449

 Score =  186 bits (473), Expect(2) = 7e-88
 Identities = 94/143 (65%), Positives = 114/143 (79%)
 Frame = -2

Query: 1112 SCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLI 933
            S   YLTR EEAEFSL ++EGARLE  +R+L E R  EP+  Q AE VG++  S+E+ L 
Sbjct: 146  SSEDYLTRREEAEFSLCLREGARLEGIRRKLREKRGREPSRGQWAEAVGMRESSMERRLG 205

Query: 932  RARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTY 753
             ARE R RI  SYRRLV SIA +Y GKG+SL DLIQEGS+GLLRGAE+FD R+GYKLSTY
Sbjct: 206  IARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAERFDHRRGYKLSTY 265

Query: 752  VYWWIKQAIIRAVSSKSRLIRLP 684
            VYWWIKQAII+A+++KSR++RLP
Sbjct: 266  VYWWIKQAIIKAIATKSRIVRLP 288



 Score =  166 bits (421), Expect(2) = 7e-88
 Identities = 87/154 (56%), Positives = 112/154 (72%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           SMC  VAK++EA+ VL  RLGR+P+ EEIA    +++S V+L+ ER   P+S+D+ L   
Sbjct: 290 SMCATVAKVSEASGVLMSRLGRRPSQEEIAEKTGIALSRVRLVTERCRLPLSIDQPLGRH 349

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G ++L++II GPEETRPE MV RE +K  ++ LL TLSERE  I+RL FG NGE  +S +
Sbjct: 350 GDISLKDIIAGPEETRPEEMVKREWMKGTMEMLLQTLSEREECIVRLQFGMNGETPKSCD 409

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLR 194
           EIGRL+NLSRERVRQIHYIAL KLR      +LR
Sbjct: 410 EIGRLLNLSRERVRQIHYIALAKLRQQHATQHLR 443


>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 452

 Score =  178 bits (452), Expect(2) = 2e-86
 Identities = 88/139 (63%), Positives = 109/139 (78%)
 Frame = -2

Query: 1100 YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRARE 921
            YL+  EEA+  + +KEGA+LE  + R  E +E EPTS QLA  + +K  S++K +   RE
Sbjct: 155  YLSPREEADCCMSLKEGAKLESERTRFTEAQEHEPTSKQLANAMRIKMSSIDKVICNRRE 214

Query: 920  SRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVYWW 741
            S+ERI  SYR LV S+A +YQGKGLSL+DLIQEGSIGLLRGAEKFDP +G KLSTYVYWW
Sbjct: 215  SQERIIKSYRGLVVSVASSYQGKGLSLQDLIQEGSIGLLRGAEKFDPERGLKLSTYVYWW 274

Query: 740  IKQAIIRAVSSKSRLIRLP 684
            I+QAIIRA+ +KSR+IRLP
Sbjct: 275  IRQAIIRAIENKSRIIRLP 293



 Score =  170 bits (430), Expect(2) = 2e-86
 Identities = 84/157 (53%), Positives = 122/157 (77%)
 Frame = -3

Query: 652 MCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRG 473
           MC ++AKI  A    ++R  R P+++EIA M++V  S V+L+CERS  P+SLDR + D+G
Sbjct: 296 MCGVMAKITRAKKNFNQRFQRLPSHDEIAEMINVQASIVRLVCERSRLPLSLDRVVTDQG 355

Query: 472 SMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEE 293
            M LQ+II GP+E  PETM+ ++L+KQE+++LL  LS+REA +LRL+FG NG+  +SFEE
Sbjct: 356 CMALQDIIRGPDEMMPETMLKKQLMKQEMEKLLNRLSDREAEVLRLHFGLNGDTPQSFEE 415

Query: 292 IGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           IGRL+ LSRERVRQI+ IAL+KL+  +T+ +L++YI+
Sbjct: 416 IGRLLKLSRERVRQINSIALSKLKQTSTLEDLKLYIV 452


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score =  177 bits (450), Expect(2) = 2e-84
 Identities = 92/156 (58%), Positives = 120/156 (76%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           SM E+ AK+AEA+ VL+R+L RQP+ EEIA  ++++VS V+L  ERS  PVSLDR  +  
Sbjct: 259 SMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQN 318

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQEI+ GP+ETRPE MV RE +K E++QLL +L+ RE+ +L LYFG NGE   SFE
Sbjct: 319 GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFE 378

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVY 188
           EIG+ + LSRERVRQI+ IAL KLRN+  VN+L++Y
Sbjct: 379 EIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414



 Score =  164 bits (415), Expect(2) = 2e-84
 Identities = 86/147 (58%), Positives = 109/147 (74%)
 Frame = -2

Query: 1124 LVRPSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLE 945
            +V  S S +L+R EE +  LY+KEGA+LE     +    E+E  S  LA   G K++S  
Sbjct: 114  VVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLASGRGKKKRSAN 170

Query: 944  KTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYK 765
            + L R +E+RE+I   YRRLV SIA  YQGKGL+L+DLIQEGSIGLLRGAE+FDP +GYK
Sbjct: 171  EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230

Query: 764  LSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            LSTYVYWWIKQAI+RA++ KSRL++LP
Sbjct: 231  LSTYVYWWIKQAILRAIAHKSRLVKLP 257


>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
           gi|557100961|gb|ESQ41324.1| hypothetical protein
           EUTSA_v10013654mg [Eutrema salsugineum]
          Length = 421

 Score =  174 bits (441), Expect(2) = 7e-84
 Identities = 92/156 (58%), Positives = 118/156 (75%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           SM E+ AK+AEA+ VL+R+L R P+ EEIA  +++ VS V+L  ER   PVSLDR  +  
Sbjct: 261 SMWELTAKVAEASNVLTRKLKRIPSCEEIAEHLNIHVSAVRLAVERGRSPVSLDRVASLN 320

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQEI+ GP+ETRPE MV RE +K E++QLL +L+ RE+ +L LYFG NGE   SFE
Sbjct: 321 GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFE 380

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVY 188
           EIG+ + LSRERVRQI+ IALTKLRN+  VN+LR+Y
Sbjct: 381 EIGKSLKLSRERVRQINGIALTKLRNVHNVNDLRLY 416



 Score =  165 bits (418), Expect(2) = 7e-84
 Identities = 86/146 (58%), Positives = 108/146 (73%)
 Frame = -2

Query: 1121 VRPSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEK 942
            V  S S +L+R EE +  LY+KEGA+LE     +    E+E  S  L+   G K++S  +
Sbjct: 117  VAASRSGFLSRLEEVQLCLYLKEGAKLENVGTSV---EENEIVSVLLSSGKGKKKRSANE 173

Query: 941  TLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKL 762
             L R RE+RE+I   YRRLV SIA  YQGKGL+L+DLIQEGSIGLLRGAE+FDP +GYKL
Sbjct: 174  ILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKL 233

Query: 761  STYVYWWIKQAIIRAVSSKSRLIRLP 684
            STYVYWWIKQAI+RA++ KSRL++LP
Sbjct: 234  STYVYWWIKQAILRAIAHKSRLVKLP 259


>ref|XP_006287834.1| hypothetical protein CARUB_v10001054mg [Capsella rubella]
           gi|482556540|gb|EOA20732.1| hypothetical protein
           CARUB_v10001054mg [Capsella rubella]
          Length = 419

 Score =  175 bits (444), Expect(2) = 2e-83
 Identities = 90/156 (57%), Positives = 119/156 (76%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           SM E+ A++AEA+ VL+R+L RQP+ EEIA  +++ VS V+L  E+S  PVSLDR  +  
Sbjct: 259 SMWELTARVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVEKSRSPVSLDRVASQN 318

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQEI+ GP+ETRPE MV RE +K E++QLL +L+ RE+ +L LYFG NGE   SFE
Sbjct: 319 GRMTLQEIVRGPDETRPEEMVKREHIKNEIEQLLGSLTARESRVLGLYFGLNGETPMSFE 378

Query: 295 EIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVY 188
           EIG+ + LSRERVRQI+ IAL KLRN+  VN+L++Y
Sbjct: 379 EIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414



 Score =  163 bits (412), Expect(2) = 2e-83
 Identities = 84/143 (58%), Positives = 107/143 (74%)
 Frame = -2

Query: 1112 SCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLI 933
            S S +L+R EE +  LY+KEGA+LE         +E+E  S  L+   G K++S  + L 
Sbjct: 118  SRSGFLSRLEEVQLCLYLKEGAKLENLGT---SAQENEMVSVLLSSGKGKKKRSANEILC 174

Query: 932  RARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTY 753
            R +E+RE+I   YRRLV SIA  YQGKGL+L+DLIQEGSIGLLRGAE+FDP +GYKLSTY
Sbjct: 175  RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 234

Query: 752  VYWWIKQAIIRAVSSKSRLIRLP 684
            VYWWIKQAI+RA++ KSRL++LP
Sbjct: 235  VYWWIKQAILRAIAHKSRLVKLP 257


>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
            gi|550331146|gb|ERP56881.1| hypothetical protein
            POPTR_0009s06210g [Populus trichocarpa]
          Length = 423

 Score =  180 bits (457), Expect(2) = 2e-82
 Identities = 86/139 (61%), Positives = 115/139 (82%)
 Frame = -2

Query: 1100 YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRARE 921
            YL+  EEAEFS+ +K  AR+E A+RR+ E +E +PTS QLA+ + +++ S++  L + RE
Sbjct: 125  YLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCKGRE 184

Query: 920  SRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVYWW 741
            SRE+I  SYRRLV SIA +YQ KGLSL+DLIQEGSIGLLRGAE+FDP++GYKLSTYVYWW
Sbjct: 185  SREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTYVYWW 244

Query: 740  IKQAIIRAVSSKSRLIRLP 684
            IK+AI+ A+S+ +R++RLP
Sbjct: 245  IKEAILTAISNNTRMVRLP 263



 Score =  154 bits (389), Expect(2) = 2e-82
 Identities = 86/153 (56%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
 Frame = -3

Query: 643 MVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRGSMT 464
           +VAKIA AN  LS +L R P+Y+EIA ++++ VS V+L  ER   P+SLD+ +  + S+T
Sbjct: 269 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNSLT 328

Query: 463 LQEIIVGPEETRPETMVNRELVKQEVQQLLMT-LSEREAIILRLYFGFNGEITRSFEEIG 287
           LQEII GP+ET PE MV REL+KQE+++L  T L+EREA ILRL+FG NG+  +S EEIG
Sbjct: 329 LQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIG 388

Query: 286 RLMNLSRERVRQIHYIALTKLRNITTVNNLRVY 188
           RL+ LSRERVRQI   AL+KLR+   V  L+ Y
Sbjct: 389 RLVKLSRERVRQIIGTALSKLRHKEIVEPLKAY 421


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  173 bits (439), Expect(2) = 2e-80
 Identities = 91/154 (59%), Positives = 119/154 (77%)
 Frame = -3

Query: 643 MVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRGSMT 464
           MVAKIAEAN VL RRL R+PTY EIA +++V+VS V+L+ ERS  P+SLDR++ D+ ++ 
Sbjct: 250 MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 309

Query: 463 LQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEEIGR 284
           L+EII GP E  PE MV R+L+KQ V +LL TL +RE  I+RLYFG NGE   SFEEIG+
Sbjct: 310 LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 369

Query: 283 LMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           L+ LSRER+RQIH IAL+KL   T V++L+ Y++
Sbjct: 370 LLKLSRERIRQIHGIALSKLEQNTLVDSLKFYVV 403



 Score =  155 bits (391), Expect(2) = 2e-80
 Identities = 84/154 (54%), Positives = 110/154 (71%)
 Frame = -2

Query: 1145 DYNEQPWLVRPSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVG 966
            ++  Q  +V    S +L+  +EAE  L +KEGA++E AK+R+ E +E     S+      
Sbjct: 96   NFLRQKVVVGSVTSGFLSSTDEAELCLCLKEGAKIEVAKQRMTE-QEGNSAISRFT---- 150

Query: 965  LKRKSLEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKF 786
            L+  S++K LI  R+S+ER+   YR LVASIA  YQGKGLS++DLIQEG+IGLL GAEKF
Sbjct: 151  LENTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKF 210

Query: 785  DPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            DP +G KLSTYVYWWIKQ II+A++ KSRLIRLP
Sbjct: 211  DPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLP 244


>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
            gi|550331145|gb|ERP56880.1| hypothetical protein
            POPTR_0009s06210g [Populus trichocarpa]
          Length = 419

 Score =  174 bits (440), Expect(2) = 2e-80
 Identities = 84/137 (61%), Positives = 112/137 (81%)
 Frame = -2

Query: 1100 YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRARE 921
            YL+  EEAEFS+ +K  AR+E A+RR+ E +E +PTS QLA+ + +++ S++  L + RE
Sbjct: 125  YLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCKGRE 184

Query: 920  SRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVYWW 741
            SRE+I  SYRRLV SIA +YQ KGLSL+DLIQEGSIGLLRGAE+FDP++GYKLSTYVYWW
Sbjct: 185  SREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTYVYWW 244

Query: 740  IKQAIIRAVSSKSRLIR 690
            IK+AI+ A+S+ +R+ R
Sbjct: 245  IKEAILTAISNNTRMRR 261



 Score =  154 bits (389), Expect(2) = 2e-80
 Identities = 86/153 (56%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
 Frame = -3

Query: 643 MVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRGSMT 464
           +VAKIA AN  LS +L R P+Y+EIA ++++ VS V+L  ER   P+SLD+ +  + S+T
Sbjct: 265 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNSLT 324

Query: 463 LQEIIVGPEETRPETMVNRELVKQEVQQLLMT-LSEREAIILRLYFGFNGEITRSFEEIG 287
           LQEII GP+ET PE MV REL+KQE+++L  T L+EREA ILRL+FG NG+  +S EEIG
Sbjct: 325 LQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIG 384

Query: 286 RLMNLSRERVRQIHYIALTKLRNITTVNNLRVY 188
           RL+ LSRERVRQI   AL+KLR+   V  L+ Y
Sbjct: 385 RLVKLSRERVRQIIGTALSKLRHKEIVEPLKAY 417


>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Solanum tuberosum]
          Length = 421

 Score =  170 bits (430), Expect(2) = 4e-79
 Identities = 84/139 (60%), Positives = 111/139 (79%)
 Frame = -2

Query: 1100 YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRARE 921
            YLT  EEA++S Y+KE AR+E  ++ + ET E + +S QLA+  G+  + L+K LI A+E
Sbjct: 123  YLTHEEEAKYSWYLKEEARIEILRKMVEETSEIDLSSKQLAKAAGMSTQRLDKLLINAKE 182

Query: 920  SRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVYWW 741
            S+++I   YR LV S+A +YQGKGLSL+DLIQEGSIGLL GA+KF+P+KGYKLSTY YWW
Sbjct: 183  SQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKFNPKKGYKLSTYAYWW 242

Query: 740  IKQAIIRAVSSKSRLIRLP 684
            I+QAI RAV++KSR+IRLP
Sbjct: 243  IRQAISRAVANKSRVIRLP 261



 Score =  154 bits (388), Expect(2) = 4e-79
 Identities = 78/158 (49%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           S+ E+V KI  ANT LSR+L R P+Y+EIA  + + VS V+L+ ER+  P+S+D+ +  +
Sbjct: 263 SISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTSQ 322

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLL-MTLSEREAIILRLYFGFNGEITRSF 299
           G M+LQ II GPE+T PE  V R+++KQ+++++L   L +REA IL+L+FG NG+  +SF
Sbjct: 323 GYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQSF 382

Query: 298 EEIGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYI 185
           EEIGR++ LSRER+RQI+  AL+KLR  + ++N ++YI
Sbjct: 383 EEIGRVLKLSRERIRQINCTALSKLRESSMLDNFKMYI 420


>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Cicer arietinum]
          Length = 407

 Score =  170 bits (431), Expect(2) = 7e-79
 Identities = 89/154 (57%), Positives = 120/154 (77%)
 Frame = -3

Query: 643 MVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRGSMT 464
           MV KIAEA  VLS+RL R+PTY E+A +++V+VS V+L+ ERS  P+SLD+ + D+G++T
Sbjct: 254 MVGKIAEAKNVLSKRLRRKPTYNEMAEVLNVNVSIVKLVSERSRQPISLDKAVFDQGNLT 313

Query: 463 LQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEEIGR 284
           L+EI+ GP E  PE MV R+L KQ V +LL TL++REA ILRLYFG NGE   SFEEIG+
Sbjct: 314 LKEIMPGPVEMIPEKMVERQLKKQGVVKLLNTLNKREAEILRLYFGLNGETPLSFEEIGK 373

Query: 283 LMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
            + LSRER+RQIH IAL+KL+  T V++L+ Y++
Sbjct: 374 QLKLSRERIRQIHGIALSKLQQTTLVDSLKFYVV 407



 Score =  152 bits (385), Expect(2) = 7e-79
 Identities = 81/139 (58%), Positives = 100/139 (71%)
 Frame = -2

Query: 1100 YLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLEKTLIRARE 921
            +L+  EEAE  L +KEGAR+E +K R+ E   +   S +LA        SL+K L   RE
Sbjct: 114  FLSSIEEAEICLGLKEGARIEVSKHRMTEHEGNSSISRRLAH----GNTSLDKVLSNTRE 169

Query: 920  SRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYKLSTYVYWW 741
            S+ER+   YR LVASIA  YQGKGLS +DL QEG+IGLL GAEKFDP +G KLSTYVYWW
Sbjct: 170  SKERLAHEYRGLVASIAARYQGKGLSFQDLTQEGTIGLLHGAEKFDPNRGCKLSTYVYWW 229

Query: 740  IKQAIIRAVSSKSRLIRLP 684
            IKQAI++A++ KSRL+RLP
Sbjct: 230  IKQAILKALARKSRLVRLP 248


>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Cucumis sativus]
          Length = 436

 Score =  168 bits (426), Expect(2) = 3e-77
 Identities = 86/154 (55%), Positives = 110/154 (71%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1136 EQPWLVR---PSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVG 966
            E+ W+     P    YL+  EEAE  L +KE   LE  K R+ ET+E EPT+ QLA  +G
Sbjct: 124  EENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMG 183

Query: 965  LKRKSLEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKF 786
             K   +++ L RARESR+R+   Y +LV SIA  YQGKGLSL+DL QEG+IGLL+GAE+F
Sbjct: 184  TKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERF 243

Query: 785  DPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            +P +G+KLSTY YWWI+QAIIRA+  KSRL+RLP
Sbjct: 244  EPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLP 277



 Score =  149 bits (376), Expect(2) = 3e-77
 Identities = 77/157 (49%), Positives = 113/157 (71%)
 Frame = -3

Query: 652 MCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRG 473
           M +MVA+IAE N  L  +L R PT +E+A  + V +S ++L+ ERS  P+S+++ + DR 
Sbjct: 280 MGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRS 339

Query: 472 SMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEE 293
            +TLQEI+ GP+   PE MV R+L+KQE+++LL TLS+REA IL LYFG NGEI +SFEE
Sbjct: 340 CLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEE 399

Query: 292 IGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           IG+ +NLSRE +RQ +   L+KL+    ++ L+ Y++
Sbjct: 400 IGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 436


>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Cucumis sativus]
          Length = 341

 Score =  168 bits (426), Expect(2) = 3e-77
 Identities = 86/154 (55%), Positives = 110/154 (71%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1136 EQPWLVR---PSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVG 966
            E+ W+     P    YL+  EEAE  L +KE   LE  K R+ ET+E EPT+ QLA  +G
Sbjct: 29   EENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMG 88

Query: 965  LKRKSLEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKF 786
             K   +++ L RARESR+R+   Y +LV SIA  YQGKGLSL+DL QEG+IGLL+GAE+F
Sbjct: 89   TKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERF 148

Query: 785  DPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            +P +G+KLSTY YWWI+QAIIRA+  KSRL+RLP
Sbjct: 149  EPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLP 182



 Score =  149 bits (376), Expect(2) = 3e-77
 Identities = 77/157 (49%), Positives = 113/157 (71%)
 Frame = -3

Query: 652 MCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRG 473
           M +MVA+IAE N  L  +L R PT +E+A  + V +S ++L+ ERS  P+S+++ + DR 
Sbjct: 185 MGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRS 244

Query: 472 SMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEE 293
            +TLQEI+ GP+   PE MV R+L+KQE+++LL TLS+REA IL LYFG NGEI +SFEE
Sbjct: 245 CLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEE 304

Query: 292 IGRLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
           IG+ +NLSRE +RQ +   L+KL+    ++ L+ Y++
Sbjct: 305 IGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 341


>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 389

 Score =  182 bits (462), Expect(2) = 2e-76
 Identities = 90/147 (61%), Positives = 119/147 (80%)
 Frame = -2

Query: 1124 LVRPSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELVGLKRKSLE 945
            L +P  + YL+  EEAEF L +K+ AR+E A+RR+ ET+E EPTS QLAE + +++K+++
Sbjct: 108  LFQPVNNGYLSSIEEAEFCLCLKDHARVEAARRRIAETQEHEPTSKQLAEALRMRKKNVD 167

Query: 944  KTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSIGLLRGAEKFDPRKGYK 765
            K L + R+SRERI  +YRRLV SIA  Y+GKGLSL+DLIQEGSIGLLRGAE+FDP++G K
Sbjct: 168  KILCKGRQSRERITGNYRRLVLSIANRYRGKGLSLQDLIQEGSIGLLRGAERFDPKRGNK 227

Query: 764  LSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            LSTYVYWWIK+AII ++S  SR++R P
Sbjct: 228  LSTYVYWWIKEAIITSISINSRIVRQP 254



 Score =  132 bits (332), Expect(2) = 2e-76
 Identities = 69/132 (52%), Positives = 94/132 (71%)
 Frame = -3

Query: 655 SMCEMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADR 476
           S+ +   KIAEA   L+ RLGR P+Y EIA  ++V VS V+L+  RS   VSLD+ ++D+
Sbjct: 256 SLWDRTTKIAEAKISLTERLGRLPSYREIAKELNVHVSTVRLVFSRSRSTVSLDQAVSDQ 315

Query: 475 GSMTLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFE 296
           G MTLQEII GPEE  PE MV ++L+K+E+++L+ TL +REA  LRL FG NG+  +S +
Sbjct: 316 GGMTLQEIIPGPEEMMPENMVKKQLLKKELEELIQTLGKREAHTLRLIFGLNGQTPQSCD 375

Query: 295 EIGRLMNLSRER 260
           EIGR + L RER
Sbjct: 376 EIGRSLKLCRER 387


>ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022159|gb|ESW20889.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 367

 Score =  173 bits (438), Expect(2) = 3e-76
 Identities = 86/155 (55%), Positives = 120/155 (77%)
 Frame = -3

Query: 646 EMVAKIAEANTVLSRRLGRQPTYEEIANMVDVSVSGVQLLCERSWPPVSLDRTLADRGSM 467
           EMVAK+A+AN +LS RL R+PTY+E A +++V  S ++L+ E+S  P+SLD+ + D G M
Sbjct: 213 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 272

Query: 466 TLQEIIVGPEETRPETMVNRELVKQEVQQLLMTLSEREAIILRLYFGFNGEITRSFEEIG 287
           TLQEII GPE+  PE MV R+L+KQEV +LL TLS+REA I+ LY+G NGE   +F+EIG
Sbjct: 273 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 332

Query: 286 RLMNLSRERVRQIHYIALTKLRNITTVNNLRVYIM 182
            +M LSRER+RQI+ IAL+KLR  + ++NL+ Y++
Sbjct: 333 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 367



 Score =  141 bits (355), Expect(2) = 3e-76
 Identities = 83/163 (50%), Positives = 108/163 (66%), Gaps = 11/163 (6%)
 Frame = -2

Query: 1139 NEQPWLVRPSCSRYLTRGEEAEFSLYIKEGARLEEAKRRLWETRESEPTSSQLAELV--G 966
            NE   +V    S YL+  EEAE  L +    R+   K    +T + +   S++A+L+  G
Sbjct: 53   NENGSIVGFRKSWYLSSREEAELCLDL----RVSSDKT---QTPQQQGAKSEVAKLITKG 105

Query: 965  LKRKS---------LEKTLIRARESRERINLSYRRLVASIAKAYQGKGLSLEDLIQEGSI 813
            L+  S         L+K L  ARES+ER+   YR LV SIA  Y GKGLSL+DLIQEG++
Sbjct: 106  LEEHSAIPIMSLLSLDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQEGTV 165

Query: 812  GLLRGAEKFDPRKGYKLSTYVYWWIKQAIIRAVSSKSRLIRLP 684
            GLLRGAEKF+P +GYKLSTYVYWWIKQA+I+A++ KSRL+RLP
Sbjct: 166  GLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAIARKSRLVRLP 208