BLASTX nr result
ID: Sinomenium22_contig00003387
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00003387
(1588 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 412 e-112
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 409 e-111
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 403 e-109
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The... 403 e-109
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 396 e-107
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr... 396 e-107
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 396 e-107
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr... 396 e-107
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 391 e-106
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 391 e-106
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 391 e-106
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 388 e-105
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 388 e-105
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 388 e-105
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 386 e-104
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 384 e-104
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 384 e-104
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 383 e-103
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 382 e-103
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 378 e-102
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 412 bits (1058), Expect = e-112
Identities = 226/437 (51%), Positives = 293/437 (67%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
MWRN+A+ ++R+ + S S+F +P N T FP+K E + H+N L
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSF-SPSNC---TSRFYFPDKARALESQDHVNSLRPVAGL 56
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKNR 954
+ L F + P + P + F L FG +
Sbjct: 57 RRIGVLSFQQDELGRPGFGVTKTPVNFFGL-----------------FGYQ--------- 90
Query: 953 ARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERRRNWKLVHGMTRGRYES 774
+ +A++ EAI +Q ++E + K D+ +E++ KL+ G+ +G++
Sbjct: 91 -KGYASAAEAIASEEDMSGVDE--VQELVEEVNKGDK---LEKQP--KLIGGVAQGKHNV 142
Query: 773 LRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNRIAAEQEL 594
LRRRQ+++ETEAWE+AAKEY+ELL+DMCE KLAPNLPY+K LFLGWFEPL + IAAEQ+L
Sbjct: 143 LRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDL 202
Query: 593 CRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIGEAIEQEA 414
C++GKNRAAYAPYFD LPA+MM+VITMHKLMGLLMTG +G RV+QA+C IGEAIE E
Sbjct: 203 CKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEV 262
Query: 413 RIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVRQIVKRQEDS 234
RI +F+EKTKK + S N G + KE +K+RKKV+ LMKKQKLQQVRQIVKRQ+DS
Sbjct: 263 RIQRFMEKTKKKSASSN-NPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDS 321
Query: 233 KPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTASKESKKASRR 54
KPWGQDA +KVG+ L++LLI+TAY+QPP DQL DGPPDIRPAF H L T KE++K +RR
Sbjct: 322 KPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRR 381
Query: 53 YGVIECDPLVRKGLERT 3
YGVIECDPLVRKGLE+T
Sbjct: 382 YGVIECDPLVRKGLEKT 398
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 409 bits (1052), Expect = e-111
Identities = 239/453 (52%), Positives = 288/453 (63%), Gaps = 15/453 (3%)
Frame = -3
Query: 1316 LMWRNVAQEVFSRKPR---------FSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTH 1164
+MWRN+A+ R PR SR +S FLGF+Q +FPE
Sbjct: 39 VMWRNIAKRAIPRAPRKCVYLDSQPLSRRYS-------FLGFSQDLIFPE---------- 81
Query: 1163 INILGTDTSYGKNLELQFTPEATDSP--NSWHFRCPFSSFELGVCRNGEDGVHTPSNRGF 990
I GT F P + S + FR +G + ED V PS
Sbjct: 82 IMKFGT-----------FEPSSCSSSGFSEMGFR------RIGEISSREDAVGRPSFGCL 124
Query: 989 GNRSTSSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEI--ERRRN 816
N+ S +S+A+ EA+ + L G MK++EK ++ +RR
Sbjct: 125 RNQMGFSGFC--PKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRREK 182
Query: 815 WKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGW 636
K+ GM +GRY LRRRQV+IETEAWE AAKEYKELL DMCE KLAPNLPYMK LFLGW
Sbjct: 183 LKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGW 242
Query: 635 FEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVI 456
FEPL + I EQELCR GKN+AAYAPYFDQLPA+MMSVITMHKL+GLLMTGGEHG RV+
Sbjct: 243 FEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVV 302
Query: 455 QASCQIGEAIEQEARIHKFLEKTKKNTKRSEIN-EGSGLDADAKENKKIRKKVTDLMKKQ 279
QA+C IG+AIEQE RIH FLEKTK+ + N EG G D E +K+RKKVT+LMKKQ
Sbjct: 303 QAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQ 362
Query: 278 KLQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVD-QLPDGPPDIRPAFR 102
KL RQIVK ++SKPWG +A+ KVG+ L++LL+QTAY+QPPVD QL D PPDIRPAF
Sbjct: 363 KLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFV 422
Query: 101 HCLVTASKESKKASRRYGVIECDPLVRKGLERT 3
H T +E+KK RR+GVIECDPLV+KGLERT
Sbjct: 423 HTFKTVMREAKKIGRRFGVIECDPLVKKGLERT 455
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 403 bits (1036), Expect = e-109
Identities = 217/437 (49%), Positives = 275/437 (62%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
+WRN A++ SRK RF +F + LG Q SVFP PFE+ + ++ ++ +
Sbjct: 36 VWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGF 95
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKNR 954
+ + P+ W R P + G C G V + SS
Sbjct: 96 RGKGAISSPEDCMCKPSFWSVRNPI--WFNGFCPKGYASV---------AEAVSSTDVEE 144
Query: 953 ARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERRRNWKLVHGMTRGRYES 774
S V+ + + + ++E + + ++R GM +G+Y
Sbjct: 145 EVSVVDEVQEL----------------LQQMSIEEKREAQYKQRTRQNRARGMGQGKYHM 188
Query: 773 LRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNRIAAEQEL 594
L+RRQ++IETEAWE+AAKEY+EL+ DMCE KLAPNLPYMK LFLGWFEPL N I EQ+L
Sbjct: 189 LKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDL 248
Query: 593 CRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIGEAIEQEA 414
CRKGKN+ AYAPY DQLPA+MMSVITMHKLMGLLMTGGEHG RV+ A+C IGEAIEQE
Sbjct: 249 CRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEV 308
Query: 413 RIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVRQIVKRQEDS 234
RIHKFLE T+K K + E DA KE +K+ KKVT+LMKKQKL+ VR IV + + S
Sbjct: 309 RIHKFLEMTRKK-KVDKDQENGESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDAS 367
Query: 233 KPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTASKESKKASRR 54
K W +AR KVG+ L++LL QTA++QPP DQL DGPPDIRPAF H T +K++K ASRR
Sbjct: 368 KSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDAKNASRR 427
Query: 53 YGVIECDPLVRKGLERT 3
YGVIECDPLV KGLE+T
Sbjct: 428 YGVIECDPLVLKGLEKT 444
>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1100
Score = 403 bits (1035), Expect = e-109
Identities = 232/446 (52%), Positives = 292/446 (65%), Gaps = 7/446 (1%)
Frame = -3
Query: 1319 VLMWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDT 1140
++MWRN+A+ SR+ + +F F +FLG +Q S+F EK+ +K G+
Sbjct: 40 IVMWRNIAKHAISRR---THSFQCFARTYSFLGTSQDSIFHEKSKFRGLK-----FGSFC 91
Query: 1139 SYGKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGE--DGVHTPSNRGFGN-RSTSS 969
S + L++ G R GE V + FG+ R+
Sbjct: 92 SNSRFLDM------------------------GGRRIGEVLTNVEYIGKQSFGSPRNEIG 127
Query: 968 VIKNRARSFATSVEAIXXXXXXXXXXXXE-IQGMLEGLMKEDEKFEIERRRNWKLVH-GM 795
R + + EA+ E I+ +L+ + KE + RRR +++ GM
Sbjct: 128 CSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKELLDEMKKEQRRETGNRRRRCQIIERGM 187
Query: 794 TRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNR 615
+Y LRRRQV+IETEAWEQAAKEY+ELL DMCE+KLAPNLPY+K LFLGWFEPL +
Sbjct: 188 GESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDA 247
Query: 614 IAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIG 435
I EQEL R GK RA YA Y DQLPA+M +VITMHKLMGLLMTGGEHG RV+QA+C IG
Sbjct: 248 IIKEQELYRLGKLRAGYAGYLDQLPADMTAVITMHKLMGLLMTGGEHGCARVVQAACLIG 307
Query: 434 EAIEQEARIHKFLEKTKKN--TKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVR 261
+AIEQE RIHKFLEKTKK K++E +EG +A+ KE +K+RKKVTDL+KKQKL VR
Sbjct: 308 DAIEQEVRIHKFLEKTKKKRVDKKNE-DEGDKPNAEIKEQEKLRKKVTDLIKKQKLPAVR 366
Query: 260 QIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTAS 81
QIVK Q+D+KPWGQDA+ KVG+HL++LL+QTAY+QPP DQL D PPD+RPAF H L T
Sbjct: 367 QIVKGQDDTKPWGQDAKAKVGSHLIELLMQTAYIQPPADQLADCPPDVRPAFVHSLRTVV 426
Query: 80 KESKKASRRYGVIECDPLVRKGLERT 3
KE+KK RRYGVIEC+PLVRKGLERT
Sbjct: 427 KENKKTGRRYGVIECNPLVRKGLERT 452
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 396 bits (1018), Expect = e-107
Identities = 234/463 (50%), Positives = 284/463 (61%), Gaps = 14/463 (3%)
Frame = -3
Query: 1349 VQVP*VNSFRVLMWRNVAQEVFS---RKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPF 1179
++ P +MWRNVA++ S +KP FSR +S FLG +Q S+ EK
Sbjct: 35 IRFPSPEKISSVMWRNVAKQAISLHLKKP-FSRAYS-------FLGISQDSILREKVK-- 84
Query: 1178 EIKTHINILGTDTSYGKNLELQFTPEATDSPNSWHFRC----PFSSFELGVCRNGEDGVH 1011
F C P E+G R GE H
Sbjct: 85 -----------------------------------FGCLDMVPRGIHEVGSGRIGEILNH 109
Query: 1010 TPSNRGFGNRSTSSVIKNR----ARSFATSVEAIXXXXXXXXXXXXE-IQGMLEGLMKED 846
+ R++ V+KN R +AT EA+ E IQ +L+ + KE
Sbjct: 110 ----EDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEQ 165
Query: 845 EKFEIERRRNWKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNL 666
+ RR ++ GM G+Y L+ RQV+IETEAWE+AA EY+ELL DMCE KLAPNL
Sbjct: 166 QSGGGRNRR--RVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNL 223
Query: 665 PYMKLLFLGWFEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMT 486
PYMK LFLGWFEPL + IA EQE CR K++ AYAPYFDQLPA+MM+VITMHKLMGLLMT
Sbjct: 224 PYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMT 283
Query: 485 GGEHGRVRVIQASCQIGEAIEQEARIHKFLEKTKK--NTKRSEINEGSGLDADAKENKKI 312
GGEHGR RV+QA+C IG+AIEQE RIHKFLEKTKK TK E EG + E +K+
Sbjct: 284 GGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL 343
Query: 311 RKKVTDLMKKQKLQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPD 132
RKKVTDL+KKQKL VR+IVK Q+D KPWGQDAR KVG+ +++LL QTAY+Q P DQL D
Sbjct: 344 RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLAD 403
Query: 131 GPPDIRPAFRHCLVTASKESKKASRRYGVIECDPLVRKGLERT 3
PPDI PAF H L T SKE+K S++YGVIEC+PLV KGLERT
Sbjct: 404 APPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT 446
>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533046|gb|ESR44229.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 928
Score = 396 bits (1018), Expect = e-107
Identities = 236/466 (50%), Positives = 287/466 (61%), Gaps = 17/466 (3%)
Frame = -3
Query: 1349 VQVP*VNSFRVLMWRNVAQEVFS---RKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPF 1179
++ P +MWRNVA++ S +KP FSR +S FLG +Q S+ EK
Sbjct: 35 IRFPSPEKISSVMWRNVAKQAISLHLKKP-FSRAYS-------FLGISQDSILREKVK-- 84
Query: 1178 EIKTHINILGTDTSYGKNLELQFTPEATDSPNSWHFRC----PFSSFELGVCRNGEDGVH 1011
F C P E+G R GE H
Sbjct: 85 -----------------------------------FGCLDMVPRGIHEVGSGRIGEILNH 109
Query: 1010 TPSNRGFGNRSTSSVIKNR----ARSFATSVEAIXXXXXXXXXXXXE-IQGMLEGLMKED 846
+ R++ V+KN R +AT EA+ E IQ +L+ + KE+
Sbjct: 110 ----EDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEE 165
Query: 845 EKFEIER---RRNWKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLA 675
++ E E R ++ GM G+Y L+ RQV+IETEAWEQAA EY+ELL DMCE KLA
Sbjct: 166 QR-EGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLA 224
Query: 674 PNLPYMKLLFLGWFEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGL 495
PNLPYMK LFLGWFEPL + IA EQE CR K++ AYAPYFDQLPA+MM+VITMHKLMGL
Sbjct: 225 PNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGL 284
Query: 494 LMTGGEHGRVRVIQASCQIGEAIEQEARIHKFLEKTKK--NTKRSEINEGSGLDADAKEN 321
LMTGGEHGR RV+QA+C IG+AIEQE RIHKFLEKTKK TK E EG + E
Sbjct: 285 LMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQ 344
Query: 320 KKIRKKVTDLMKKQKLQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQ 141
+K+RKKVTDL+KKQKL VR+IVK Q+D KPWGQDAR KVG+ +++LL QTAY+Q P DQ
Sbjct: 345 EKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ 404
Query: 140 LPDGPPDIRPAFRHCLVTASKESKKASRRYGVIECDPLVRKGLERT 3
L D PPDI PAF H L T SKE+K S++YGVIEC+PLV KGLERT
Sbjct: 405 LVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERT 450
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 396 bits (1018), Expect = e-107
Identities = 236/466 (50%), Positives = 287/466 (61%), Gaps = 17/466 (3%)
Frame = -3
Query: 1349 VQVP*VNSFRVLMWRNVAQEVFS---RKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPF 1179
++ P +MWRNVA++ S +KP FSR +S FLG +Q S+ EK
Sbjct: 35 IRFPSPEKISSVMWRNVAKQAISLHLKKP-FSRAYS-------FLGISQDSILREKVK-- 84
Query: 1178 EIKTHINILGTDTSYGKNLELQFTPEATDSPNSWHFRC----PFSSFELGVCRNGEDGVH 1011
F C P E+G R GE H
Sbjct: 85 -----------------------------------FGCLDMVPRGIHEVGSGRIGEILNH 109
Query: 1010 TPSNRGFGNRSTSSVIKNR----ARSFATSVEAIXXXXXXXXXXXXE-IQGMLEGLMKED 846
+ R++ V+KN R +AT EA+ E IQ +L+ + KE+
Sbjct: 110 ----EDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEE 165
Query: 845 EKFEIER---RRNWKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLA 675
++ E E R ++ GM G+Y L+ RQV+IETEAWEQAA EY+ELL DMCE KLA
Sbjct: 166 QR-EGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLA 224
Query: 674 PNLPYMKLLFLGWFEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGL 495
PNLPYMK LFLGWFEPL + IA EQE CR K++ AYAPYFDQLPA+MM+VITMHKLMGL
Sbjct: 225 PNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGL 284
Query: 494 LMTGGEHGRVRVIQASCQIGEAIEQEARIHKFLEKTKK--NTKRSEINEGSGLDADAKEN 321
LMTGGEHGR RV+QA+C IG+AIEQE RIHKFLEKTKK TK E EG + E
Sbjct: 285 LMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQ 344
Query: 320 KKIRKKVTDLMKKQKLQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQ 141
+K+RKKVTDL+KKQKL VR+IVK Q+D KPWGQDAR KVG+ +++LL QTAY+Q P DQ
Sbjct: 345 EKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ 404
Query: 140 LPDGPPDIRPAFRHCLVTASKESKKASRRYGVIECDPLVRKGLERT 3
L D PPDI PAF H L T SKE+K S++YGVIEC+PLV KGLERT
Sbjct: 405 LVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERT 450
>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533044|gb|ESR44227.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 933
Score = 396 bits (1018), Expect = e-107
Identities = 236/466 (50%), Positives = 287/466 (61%), Gaps = 17/466 (3%)
Frame = -3
Query: 1349 VQVP*VNSFRVLMWRNVAQEVFS---RKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPF 1179
++ P +MWRNVA++ S +KP FSR +S FLG +Q S+ EK
Sbjct: 35 IRFPSPEKISSVMWRNVAKQAISLHLKKP-FSRAYS-------FLGISQDSILREKVK-- 84
Query: 1178 EIKTHINILGTDTSYGKNLELQFTPEATDSPNSWHFRC----PFSSFELGVCRNGEDGVH 1011
F C P E+G R GE H
Sbjct: 85 -----------------------------------FGCLDMVPRGIHEVGSGRIGEILNH 109
Query: 1010 TPSNRGFGNRSTSSVIKNR----ARSFATSVEAIXXXXXXXXXXXXE-IQGMLEGLMKED 846
+ R++ V+KN R +AT EA+ E IQ +L+ + KE+
Sbjct: 110 ----EDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEE 165
Query: 845 EKFEIER---RRNWKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLA 675
++ E E R ++ GM G+Y L+ RQV+IETEAWEQAA EY+ELL DMCE KLA
Sbjct: 166 QR-EGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLA 224
Query: 674 PNLPYMKLLFLGWFEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGL 495
PNLPYMK LFLGWFEPL + IA EQE CR K++ AYAPYFDQLPA+MM+VITMHKLMGL
Sbjct: 225 PNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGL 284
Query: 494 LMTGGEHGRVRVIQASCQIGEAIEQEARIHKFLEKTKK--NTKRSEINEGSGLDADAKEN 321
LMTGGEHGR RV+QA+C IG+AIEQE RIHKFLEKTKK TK E EG + E
Sbjct: 285 LMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQ 344
Query: 320 KKIRKKVTDLMKKQKLQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQ 141
+K+RKKVTDL+KKQKL VR+IVK Q+D KPWGQDAR KVG+ +++LL QTAY+Q P DQ
Sbjct: 345 EKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ 404
Query: 140 LPDGPPDIRPAFRHCLVTASKESKKASRRYGVIECDPLVRKGLERT 3
L D PPDI PAF H L T SKE+K S++YGVIEC+PLV KGLERT
Sbjct: 405 LVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERT 450
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 391 bits (1004), Expect = e-106
Identities = 220/446 (49%), Positives = 279/446 (62%), Gaps = 9/446 (2%)
Frame = -3
Query: 1313 MWRNVAQE-------VFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINI 1155
MWRN++++ VFS FS +P + S+F E P ++++ IN
Sbjct: 1 MWRNLSKQSYLRNFKVFSESHPSPNAFSAGKSP-------KDSIFVENAVPRQLRSCINT 53
Query: 1154 LGTDTSYGKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRST 975
G++ + + L P PN + + + R FG+
Sbjct: 54 CGSELGFRRALVFWRPPREASCPNY--------------------AISSHTFRFFGS--- 90
Query: 974 SSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR--RNWKLVH 801
R +A + EA+ +Q ++E + KE + R + KLV
Sbjct: 91 -------TRGYAAAAEALVSTSEEEVDE---LQELIEEINKEINVKSTDNREQKQPKLVG 140
Query: 800 GMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLC 621
GM G+Y SLRRRQ++IETEAWE AAKEY+ELL DMCE KLAPNLPY+K LFLGWFEPL
Sbjct: 141 GMGLGKYNSLRRRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLPYIKSLFLGWFEPLR 200
Query: 620 NRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQ 441
+ IAAEQ+LC++GKNR AYAPYFDQLPAEMM+VITMHKLMGLLMTGG +G RV+QA+C
Sbjct: 201 DAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTGGGNGSARVVQAACH 260
Query: 440 IGEAIEQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVR 261
IGEAIE E RIHKFL+ K+ + +E G D +AKE ++RKKV LMKKQK+QQVR
Sbjct: 261 IGEAIEHEVRIHKFLDNCKRKNALNRTSE-EGPDPEAKEQDRLRKKVKILMKKQKVQQVR 319
Query: 260 QIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTAS 81
IV+ Q+D KPWGQDA++KVG L+ +L QTAY+QPPVDQ DG PDIRPAF H L
Sbjct: 320 NIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDIRPAFVHTLKCV- 378
Query: 80 KESKKASRRYGVIECDPLVRKGLERT 3
E+ K SRRYGVIECDPLVRKG+E+T
Sbjct: 379 -ETLKGSRRYGVIECDPLVRKGMEKT 403
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 391 bits (1004), Expect = e-106
Identities = 221/439 (50%), Positives = 285/439 (64%), Gaps = 1/439 (0%)
Frame = -3
Query: 1316 LMWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTS 1137
+MWRN+ +++ SR P+ FS+ +FLGF Q S+F + T F I+
Sbjct: 34 IMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISC------ 85
Query: 1136 YGKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKN 957
N+ + F P P ++ +N +S +SV +
Sbjct: 86 --SNIVMGFQNLGEYLPGDEFLSRPLIKNQV-------------NNNFCCRKSYASVAEA 130
Query: 956 RARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEK-FEIERRRNWKLVHGMTRGRY 780
A S + E + + +L L KE++K F RR+ L GM +Y
Sbjct: 131 VAVSSTDAEEDVSVVDE--------VHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKY 182
Query: 779 ESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNRIAAEQ 600
++L+RRQV++ETEAWEQAAKEYKELL DMCE KLAPNLPY+K LFLGWFEPL ++IA EQ
Sbjct: 183 QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQ 242
Query: 599 ELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIGEAIEQ 420
ELC +GK++AAYA YF QLPA+MM+VITMHKLMGLLMTGG+HG RV+QA+ IG+AIEQ
Sbjct: 243 ELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQ 302
Query: 419 EARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVRQIVKRQE 240
E RIH FLEKTKK + + G + +E +K+RKKVT+LMKKQKL+ V QIV+RQ+
Sbjct: 303 EVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQD 361
Query: 239 DSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTASKESKKAS 60
DSKPWGQDAR KVG+ L+DLL+QTAY+QPP +QL PPDIRPAF H + T +KE+K AS
Sbjct: 362 DSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSAS 421
Query: 59 RRYGVIECDPLVRKGLERT 3
RRYG+I+CD LV KGLERT
Sbjct: 422 RRYGIIQCDELVFKGLERT 440
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 391 bits (1004), Expect = e-106
Identities = 222/439 (50%), Positives = 286/439 (65%), Gaps = 1/439 (0%)
Frame = -3
Query: 1316 LMWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTS 1137
+MWRN+ +++ SR P+ FS+ +FLGF Q SVF + T F I+
Sbjct: 34 IMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISC------ 85
Query: 1136 YGKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKN 957
N+ + F LG G++ + P + N + K+
Sbjct: 86 --SNIVMGFQ-------------------NLGEYLPGDEFLSRPLLKNQVNSNDFCCRKS 124
Query: 956 RARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEK-FEIERRRNWKLVHGMTRGRY 780
A S A +V E+Q +L L KE++K F RR+ L GM +Y
Sbjct: 125 YA-SVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKY 183
Query: 779 ESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNRIAAEQ 600
++L+RRQV++ETEAWEQAAKEYKELL DMCE KLAPNLPY+K LFLGWFEPL ++IA EQ
Sbjct: 184 QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQ 243
Query: 599 ELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIGEAIEQ 420
ELC +GK++AAYA Y QLPA+MM+VITMHKLMGLLMTGG+HG RV+QA+ IG+AIEQ
Sbjct: 244 ELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQ 303
Query: 419 EARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVRQIVKRQE 240
E RIH FLEKTKK + + G + +E +K+RKKVT+LMKKQKL+ V QIV+RQ+
Sbjct: 304 EVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQD 362
Query: 239 DSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTASKESKKAS 60
DSKPWGQDA+ KVG+ L++LL+QTAY+QPP +QL PPDIRPAF H + T +KE+K AS
Sbjct: 363 DSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSAS 422
Query: 59 RRYGVIECDPLVRKGLERT 3
RRYG+I+CD LV KGLERT
Sbjct: 423 RRYGIIQCDELVFKGLERT 441
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 388 bits (997), Expect = e-105
Identities = 220/439 (50%), Positives = 284/439 (64%), Gaps = 1/439 (0%)
Frame = -3
Query: 1316 LMWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTS 1137
+MWRN+ +++ SR P+ FS+ +FLGF Q S+F + T F I+
Sbjct: 34 IMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISC------ 85
Query: 1136 YGKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKN 957
N+ + F P P ++ +N +S +SV +
Sbjct: 86 --SNIVMGFQNLGEYLPGDEFLSRPLIKNQV-------------NNNFCCRKSYASVAEA 130
Query: 956 RARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEK-FEIERRRNWKLVHGMTRGRY 780
A S + E + + +L L KE++K F RR+ L GM +Y
Sbjct: 131 VAVSSTDAEEDVSVVDE--------VHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKY 182
Query: 779 ESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNRIAAEQ 600
++L+RRQV++ETEAWEQAAKEYKELL DMCE KLAPNLPY+K LFLGWFEPL ++IA EQ
Sbjct: 183 QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQ 242
Query: 599 ELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIGEAIEQ 420
ELC +GK++AAYA YF QLPA+MM+VITMHKLMGLLMTGG+HG RV+QA+ IG+AIEQ
Sbjct: 243 ELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQ 302
Query: 419 EARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVRQIVKRQE 240
E RIH FLEKTKK + + G + +E +K+RKKVT+LMKKQKL+ V QIV+RQ+
Sbjct: 303 EVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQD 361
Query: 239 DSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTASKESKKAS 60
DSKPWGQDAR KVG+ L+DLL+QTAY+QPP +QL PPDI PAF H + T +KE+K AS
Sbjct: 362 DSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSAS 421
Query: 59 RRYGVIECDPLVRKGLERT 3
RRYG+I+CD LV KGLERT
Sbjct: 422 RRYGIIQCDELVFKGLERT 440
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 388 bits (997), Expect = e-105
Identities = 227/450 (50%), Positives = 290/450 (64%), Gaps = 13/450 (2%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPF-----EIKTHINILG 1149
MWR +++ +SRK R S + LGF+Q+S KT P E TH N+
Sbjct: 1 MWRYISKHAYSRKFRNSHDSA-------LLGFSQYSSSFGKTRPLQCLCEESTTHPNLGL 53
Query: 1148 TDTSYGKNLELQ------FTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFG 987
+ S + + E++ +P+ LG+ +N R G
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPH------------LGLSQNSTFSSVKGDFRICG 101
Query: 986 NRSTSSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR-RNWK 810
R + S+ R RS+ ++ EAI IQ ++E + KE+E + + + K
Sbjct: 102 KRGSGSL--GRLRSYGSAAEAIVSTSEEDIDE---IQELIEEMDKENEALKANLQPKQPK 156
Query: 809 LVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFE 630
+ GM G+Y LRRRQ+++ETEAWE+AAKEY+ELL DMCE KLAPNLPYMK LFLGWFE
Sbjct: 157 TIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 216
Query: 629 PLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQA 450
PL + IAAEQ+LC +GKNR AYAP+FDQLPAEMM+VITMHKLMGLLMTGG G RV+QA
Sbjct: 217 PLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQA 276
Query: 449 SCQIGEAIEQEARIHKFLEKTKK-NTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKL 273
+ IGEAIE EARIH+FLEKTKK N ++ E G KE +++RKKV LMKKQKL
Sbjct: 277 ASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPG--DMMKERERLRKKVKILMKKQKL 334
Query: 272 QQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCL 93
+QVR+IVK+Q+D KPWGQD +KVG L+ +L++TAY+QPP DQL DGPPDIRPAF H L
Sbjct: 335 RQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTL 394
Query: 92 VTASKESKKASRRYGVIECDPLVRKGLERT 3
T E+ K SRRYGVI+CDPLVRKGL++T
Sbjct: 395 KTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 388 bits (997), Expect = e-105
Identities = 227/450 (50%), Positives = 290/450 (64%), Gaps = 13/450 (2%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPF-----EIKTHINILG 1149
MWR +++ +SRK R S + LGF+Q+S KT P E TH N+
Sbjct: 1 MWRYISKHAYSRKFRNSHDSA-------LLGFSQYSSSFGKTRPLQCLCEESTTHPNLGL 53
Query: 1148 TDTSYGKNLELQ------FTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFG 987
+ S + + E++ +P+ LG+ +N R G
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPH------------LGLSQNSTFSSVKGDFRICG 101
Query: 986 NRSTSSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR-RNWK 810
R + S+ R RS+ ++ EAI IQ ++E + KE+E + + + K
Sbjct: 102 KRGSGSL--GRLRSYGSAAEAIVSTSEEDIDE---IQELIEEMDKENEALKANLQPKQPK 156
Query: 809 LVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFE 630
+ GM G+Y LRRRQ+++ETEAWE+AAKEY+ELL DMCE KLAPNLPYMK LFLGWFE
Sbjct: 157 TIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 216
Query: 629 PLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQA 450
PL + IAAEQ+LC +GKNR AYAP+FDQLPAEMM+VITMHKLMGLLMTGG G RV+QA
Sbjct: 217 PLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQA 276
Query: 449 SCQIGEAIEQEARIHKFLEKTKK-NTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKL 273
+ IGEAIE EARIH+FLEKTKK N ++ E G KE +++RKKV LMKKQKL
Sbjct: 277 ASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPG--DMMKERERLRKKVKILMKKQKL 334
Query: 272 QQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCL 93
+QVR+IVK+Q+D KPWGQD +KVG L+ +L++TAY+QPP DQL DGPPDIRPAF H L
Sbjct: 335 RQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTL 394
Query: 92 VTASKESKKASRRYGVIECDPLVRKGLERT 3
T E+ K SRRYGVI+CDPLVRKGL++T
Sbjct: 395 KTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Solanum lycopersicum]
Length = 1022
Score = 386 bits (991), Expect = e-104
Identities = 219/441 (49%), Positives = 287/441 (65%), Gaps = 3/441 (0%)
Frame = -3
Query: 1316 LMWRNVAQEVFSRKPRFSRTFSTFLNPC-NFLGFTQHSVFPEKTSPFEIKTHINILGTDT 1140
+MWRN+ ++ +R P+ + T N ++LGF HSVF +K + +++ I + +++
Sbjct: 30 IMWRNIVKQFSTRTPQ--KILLTSKNHAYSYLGFGLHSVFKDKRT---LRSFIPVSCSNS 84
Query: 1139 SYGKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNR-STSSVI 963
+ LE+ F LG G++ + P ++ S + +
Sbjct: 85 GF---LEMGFQ-------------------NLGEFLPGDEFLRRPLLCAMKSQVSNNDIC 122
Query: 962 KNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEK-FEIERRRNWKLVHGMTRG 786
+ S A +V E+Q +L L KE++K F RR+ L G+ R
Sbjct: 123 RKNYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKEEKKQFTFRRRKQRMLTSGIDRR 182
Query: 785 RYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPLCNRIAA 606
+Y +L RRQV+IET+AWEQAAKEY+ELL DMCE KLAPNLPY+K LFLGWFEPL ++IA
Sbjct: 183 KYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAQ 242
Query: 605 EQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASCQIGEAI 426
EQELC +GK++AAY+ YF LPA+MM+VITMHKLMGLLMTGGEHG VRV+QA+ IG+AI
Sbjct: 243 EQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLLMTGGEHGNVRVVQAALTIGDAI 302
Query: 425 EQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQVRQIVKR 246
EQE RIHKFLEKT+K+ + N G A E KK+ KKVT LMKKQKL+ V QIV+
Sbjct: 303 EQEVRIHKFLEKTEKHKAEKDRNMEDGEHA-TLEQKKLHKKVTSLMKKQKLRAVNQIVRS 361
Query: 245 QEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTASKESKK 66
Q+DSKPWGQDA+ KVG+ L++ L+QTAY+Q P DQL PPDIRPAF H T +KE+K
Sbjct: 362 QDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAVDPPDIRPAFIHSTRTLAKETKS 421
Query: 65 ASRRYGVIECDPLVRKGLERT 3
ASRRYGVI+CD LV KGLERT
Sbjct: 422 ASRRYGVIQCDELVFKGLERT 442
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 384 bits (986), Expect = e-104
Identities = 228/451 (50%), Positives = 287/451 (63%), Gaps = 14/451 (3%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
MWR ++++ +SRK R S + LGF+Q+S KT P + L +++
Sbjct: 1 MWRYISKQAYSRKFRNSHDSA-------LLGFSQYSSSFGKTRPLQC------LCEESTT 47
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFEL-GVCRNGEDGVHTPSN------------RG 993
NL L S NS R L G+C H + R
Sbjct: 48 NPNLGL--------SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRV 99
Query: 992 FGNRSTSSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR-RN 816
G R + S+ RS+ ++ EAI IQ ++E + KE+E + + +
Sbjct: 100 CGKRGSGSL--GFLRSYGSAAEAIASTSEEDIDE---IQELIEEMNKENEALKTNLQPKQ 154
Query: 815 WKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGW 636
K + GM G+Y LRRRQ+++ETEAWE+AAKEY+ELL DMCE KLAPNLPYMK LFLGW
Sbjct: 155 PKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGW 214
Query: 635 FEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVI 456
FEPL + IAAEQ+LC +GKNR AYAP+FDQLPAEMM+VITMHKLMGLLMTGG G RV+
Sbjct: 215 FEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVV 274
Query: 455 QASCQIGEAIEQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQK 276
QA+ IGEAIE EARIH+FLEKTKK+ S E + D KE +++RKKV LMKKQK
Sbjct: 275 QAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDI-MKERERVRKKVKILMKKQK 333
Query: 275 LQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHC 96
LQQVR+IVK+Q+D KPWGQD +KVG L+ +L++TAY+QPP DQL D PPDIRPAF H
Sbjct: 334 LQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHT 393
Query: 95 LVTASKESKKASRRYGVIECDPLVRKGLERT 3
L T E+ K SRRYGVI+CDPLVRKGL++T
Sbjct: 394 LKTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 384 bits (985), Expect = e-104
Identities = 227/447 (50%), Positives = 283/447 (63%), Gaps = 10/447 (2%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
MWR ++++V+SRK R + + +FLGF Q KT P + G
Sbjct: 1 MWRYISKQVYSRKLRNT-------HDSDFLGFAQSF---RKTRPLQ--------GLCEEG 42
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKNR 954
+N L + + S + RC E CRN GF S S +K
Sbjct: 43 YRNPNLGVSQSSIFSRVNGKSRCLDGMCE-DSCRN--------HYLGFSESSIFSRVKGD 93
Query: 953 ---------ARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR-RNWKLV 804
RS+ ++ EAI IQ ++E + KE+E + + + K V
Sbjct: 94 FRVCGSLGVLRSYGSAAEAIASTSEEDIDE---IQELIEEMNKENEALKTNLQPKQPKTV 150
Query: 803 HGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPL 624
GM G+Y LRRRQ+++ETEAWE AAKEY+ELL DMCE KLAPNLPY+K LFLGWFEPL
Sbjct: 151 GGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPL 210
Query: 623 CNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASC 444
+ IAAEQ+LC +GKNR AYAP+FDQLPAEMM+VITMHKLMGLLMTGG G RV+QA+
Sbjct: 211 KDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAAS 270
Query: 443 QIGEAIEQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQV 264
IGEAIE EARIH+FLEKTKKN + E +G KE +++RKKV LMKKQKLQQV
Sbjct: 271 HIGEAIEHEARIHRFLEKTKKNALDGSLEETAG--DIMKERERLRKKVKILMKKQKLQQV 328
Query: 263 RQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTA 84
R+IVK+Q+D KPWGQD +KVG L+ +LI+TAY+QPP DQL D PPDIRPAF H L T
Sbjct: 329 RKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTV 388
Query: 83 SKESKKASRRYGVIECDPLVRKGLERT 3
++ K SRRYGVI+CDPLVRKGL++T
Sbjct: 389 --DTVKGSRRYGVIQCDPLVRKGLDKT 413
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 383 bits (983), Expect = e-103
Identities = 228/451 (50%), Positives = 286/451 (63%), Gaps = 14/451 (3%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
MWR +++ +SRK R S + LGF+Q+S KT P + L +++
Sbjct: 1 MWRYISKHAYSRKFRNSHDSA-------LLGFSQYSSSFGKTRPLQC------LCEESTT 47
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFEL-GVCRNGEDGVHTPSN------------RG 993
NL L S NS R L G+C H + R
Sbjct: 48 NPNLGL--------SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRV 99
Query: 992 FGNRSTSSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR-RN 816
G R + S+ RS+ ++ EAI IQ ++E + KE+E + + +
Sbjct: 100 CGKRGSGSL--GFLRSYGSAAEAIASTSEEDIDE---IQELIEEMNKENEALKTNLQPKQ 154
Query: 815 WKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGW 636
K + GM G+Y LRRRQ+++ETEAWE+AAKEY+ELL DMCE KLAPNLPYMK LFLGW
Sbjct: 155 PKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGW 214
Query: 635 FEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVI 456
FEPL + IAAEQ+LC +GKNR AYAP+FDQLPAEMM+VITMHKLMGLLMTGG G RV+
Sbjct: 215 FEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVV 274
Query: 455 QASCQIGEAIEQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQK 276
QA+ IGEAIE EARIH+FLEKTKK+ S E + D KE +++RKKV LMKKQK
Sbjct: 275 QAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDI-MKERERLRKKVKILMKKQK 333
Query: 275 LQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHC 96
LQQVR+IVK+Q+D KPWGQD +KVG L+ +L++TAY+QPP DQL D PPDIRPAF H
Sbjct: 334 LQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHT 393
Query: 95 LVTASKESKKASRRYGVIECDPLVRKGLERT 3
L T E+ K SRRYGVI+CDPLVRKGL++T
Sbjct: 394 LKTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 382 bits (980), Expect = e-103
Identities = 227/447 (50%), Positives = 283/447 (63%), Gaps = 10/447 (2%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
MWR ++++ +SRK R + + +FLGF Q KT P + G
Sbjct: 1 MWRYISKQAYSRKLRNT-------HDSDFLGFAQSF---GKTRPLQ--------GLCEEI 42
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFELGVCRNGEDGVHTPSNRGFGNRSTSSVIKNR 954
+N L + + + + RC E CRN GF S S +K
Sbjct: 43 YRNPNLGVSQSSIFTRVNGKSRCLDGMCE-DSCRN--------HYLGFSESSIFSRVKGD 93
Query: 953 ---------ARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIE-RRRNWKLV 804
RS+ ++ EAI EIQ ++E + KE+E + + + K V
Sbjct: 94 FRVCGSLGILRSYGSAAEAI---ASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTV 150
Query: 803 HGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGWFEPL 624
GM G+Y LRRRQ+++ETEAWE AAKEY+ELL DMCE KLAPNLPY+K LFLGWFEPL
Sbjct: 151 GGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPL 210
Query: 623 CNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVIQASC 444
+ IAAEQ+LC +GKNR AYAP+FDQLPAEMM+VITMHKLMGLLMTGG G RV+QA+
Sbjct: 211 RDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAAS 270
Query: 443 QIGEAIEQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQKLQQV 264
IGEAIE EARIH+FLEKTKKN + E +G KE +++RKKV LMKKQKLQQV
Sbjct: 271 HIGEAIEHEARIHRFLEKTKKNALDGSLEETAG--DIMKERERLRKKVKILMKKQKLQQV 328
Query: 263 RQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHCLVTA 84
R+IVK+Q+D KPWGQD +KVG L+ +LI+TAY+QPP DQL D PPDIRPAF H L T
Sbjct: 329 RKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTV 388
Query: 83 SKESKKASRRYGVIECDPLVRKGLERT 3
E+ K SRRYGVI+CDPLVRKGL++T
Sbjct: 389 --ETVKGSRRYGVIQCDPLVRKGLDKT 413
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 378 bits (971), Expect = e-102
Identities = 226/451 (50%), Positives = 285/451 (63%), Gaps = 14/451 (3%)
Frame = -3
Query: 1313 MWRNVAQEVFSRKPRFSRTFSTFLNPCNFLGFTQHSVFPEKTSPFEIKTHINILGTDTSY 1134
MWR ++++ +SRK R S + LGF+Q+S KT P + L +++
Sbjct: 1 MWRYISKQAYSRKFRNSHDSA-------LLGFSQYSSSFGKTRPLQC------LCEESTT 47
Query: 1133 GKNLELQFTPEATDSPNSWHFRCPFSSFEL-GVCRNGEDGVHTPSN------------RG 993
NL L S NS R L G+C H + R
Sbjct: 48 NPNLGL--------SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRV 99
Query: 992 FGNRSTSSVIKNRARSFATSVEAIXXXXXXXXXXXXEIQGMLEGLMKEDEKFEIERR-RN 816
G R + S+ RS+ ++ EAI IQ ++E + KE+E + + +
Sbjct: 100 CGKRGSGSL--GFLRSYGSAAEAIASTSEEDTDE---IQELIEEMNKENEALKTNLQPKQ 154
Query: 815 WKLVHGMTRGRYESLRRRQVRIETEAWEQAAKEYKELLADMCENKLAPNLPYMKLLFLGW 636
K + GM G+Y LRRRQ+++ETEAWE+AAKEY+ELL DMCE KLAPNLPYMK LFLGW
Sbjct: 155 PKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGW 214
Query: 635 FEPLCNRIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGRVRVI 456
FEPL + IAAEQ+LC +GKNR A AP+FDQLPAEMM+VITMHKLMG LMTGG G RV+
Sbjct: 215 FEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVV 274
Query: 455 QASCQIGEAIEQEARIHKFLEKTKKNTKRSEINEGSGLDADAKENKKIRKKVTDLMKKQK 276
QA+ IGEAIE EARIH+FLEKTKK+ S E + D KE +++RKKV LMKKQK
Sbjct: 275 QAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDI-MKERERVRKKVKILMKKQK 333
Query: 275 LQQVRQIVKRQEDSKPWGQDARIKVGTHLLDLLIQTAYLQPPVDQLPDGPPDIRPAFRHC 96
LQQVR+IVK+Q+D KPWGQD +KVG L+ +L++TAY+QPP DQL D PPDIRPAF H
Sbjct: 334 LQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHT 393
Query: 95 LVTASKESKKASRRYGVIECDPLVRKGLERT 3
L T E+ K SRRYGVI+CDPLVRKGL++T
Sbjct: 394 LKTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422