BLASTX nr result
ID: Sinomenium22_contig00002998
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Sinomenium22_contig00002998 (1447 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 124 7e-64 ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 124 7e-64 ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun... 120 4e-62 ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A... 101 2e-61 ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The... 113 1e-58 ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 111 5e-58 emb|CAD20832.1| sigma factor [Spinacia oleracea] 108 9e-58 gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus... 108 1e-57 emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 104 3e-57 ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 104 3e-57 ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 111 2e-54 dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 102 2e-54 ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutr... 102 5e-54 ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 105 9e-54 ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 102 1e-53 gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] 102 1e-53 ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas... 104 3e-53 gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis] 100 4e-53 ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 102 4e-52 emb|CAB83107.1| sigma factor 3 [Sinapis alba] 97 2e-50 >ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis] Length = 534 Score = 124 bits (311), Expect(3) = 7e-64 Identities = 56/100 (56%), Positives = 82/100 (82%) Frame = -1 Query: 694 NRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 NR I+ IQ+AR+AL + HGKYP+D+EI++ TGLSLA+IRSAS+C RIVGSID+K+G ++ Sbjct: 378 NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLN 437 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 K++EF PD ++K P+E+VMRQHM+K +F +L +S+ + Sbjct: 438 AKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477 Score = 88.6 bits (218), Expect(3) = 7e-64 Identities = 43/62 (69%), Positives = 51/62 (82%) Frame = -3 Query: 968 SYISQAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVSPFCLLD 789 S + QAGN GVLQG+E FDHTRGY+FSTYVQYWIRKSI K+VA+H+RGI+IP C L+ Sbjct: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP----CKLN 378 Query: 788 NE 783 E Sbjct: 379 RE 380 Score = 81.3 bits (199), Expect(3) = 7e-64 Identities = 39/62 (62%), Positives = 50/62 (80%) Frame = -2 Query: 411 LNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHHY 232 L+ RERQVLVLRYGL D + KSLEEIG++F +KEWIRK+EK A+TK+R E R+L H+ Sbjct: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531 Query: 231 LI 226 L+ Sbjct: 532 LV 533 >ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina] gi|557553989|gb|ESR64003.1| hypothetical protein CICLE_v10007968mg [Citrus clementina] Length = 534 Score = 124 bits (311), Expect(3) = 7e-64 Identities = 56/100 (56%), Positives = 82/100 (82%) Frame = -1 Query: 694 NRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 NR I+ IQ+AR+AL + HGKYP+D+EI++ TGLSLA+IRSAS+C RIVGSID+K+G ++ Sbjct: 378 NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLN 437 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 K++EF PD ++K P+E+VMRQHM+K +F +L +S+ + Sbjct: 438 AKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477 Score = 88.6 bits (218), Expect(3) = 7e-64 Identities = 43/62 (69%), Positives = 51/62 (82%) Frame = -3 Query: 968 SYISQAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVSPFCLLD 789 S + QAGN GVLQG+E FDHTRGY+FSTYVQYWIRKSI K+VA+H+RGI+IP C L+ Sbjct: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP----CKLN 378 Query: 788 NE 783 E Sbjct: 379 RE 380 Score = 81.3 bits (199), Expect(3) = 7e-64 Identities = 39/62 (62%), Positives = 50/62 (80%) Frame = -2 Query: 411 LNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHHY 232 L+ RERQVLVLRYGL D + KSLEEIG++F +KEWIRK+EK A+TK+R E R+L H+ Sbjct: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531 Query: 231 LI 226 L+ Sbjct: 532 LV 533 >ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica] gi|462419859|gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica] Length = 555 Score = 120 bits (301), Expect(3) = 4e-62 Identities = 59/97 (60%), Positives = 75/97 (77%) Frame = -1 Query: 709 LQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKM 530 + T ++ IN IQ+AR+A Y+ H KYPDD EI++ITGLSLA+IRSAS C R+VGS+D KM Sbjct: 394 IPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKM 453 Query: 529 GYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELL 419 S +MEFTPDT++K PEE VMRQHM+K I +LL Sbjct: 454 WESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLL 490 Score = 85.9 bits (211), Expect(3) = 4e-62 Identities = 37/50 (74%), Positives = 46/50 (92%) Frame = -3 Query: 962 ISQAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 + QAGN G+LQG+E FDH+RGY+FSTYVQYWIRKS+ +LVAQH+RG+QIP Sbjct: 346 LMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIP 395 Score = 82.0 bits (201), Expect(3) = 4e-62 Identities = 42/62 (67%), Positives = 48/62 (77%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GLN RERQVLVLRYGL + KSLEEIGR+F +KEWIRKIEK AL K+R +E + L H Sbjct: 492 GLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYLSH 551 Query: 234 YL 229 YL Sbjct: 552 YL 553 >ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda] gi|548857444|gb|ERN15250.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda] Length = 529 Score = 101 bits (252), Expect(3) = 2e-61 Identities = 46/105 (43%), Positives = 74/105 (70%) Frame = -1 Query: 709 LQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKM 530 + M N+V+N +A+RAL+ +HG++P +VEI+ TGLSL +R A+KC R+ GSID+++ Sbjct: 368 IPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLANKCLRVHGSIDQRI 427 Query: 529 GYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 G + +ME T DT I+ PE++VM+QHM ++I E+L+ + K Sbjct: 428 GDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREK 472 Score = 98.2 bits (243), Expect(3) = 2e-61 Identities = 46/63 (73%), Positives = 55/63 (87%) Frame = -2 Query: 411 LNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHHY 232 L+PRE+QVL+LRYGLWDG+CKSLEEIGR++ TKEWIRKIEK AL KVR +EVQ NL+ + Sbjct: 467 LHPREKQVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFF 526 Query: 231 LIS 223 L S Sbjct: 527 LNS 529 Score = 85.9 bits (211), Expect(3) = 2e-61 Identities = 38/50 (76%), Positives = 46/50 (92%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG+ GVLQG+E FDHTRGY+FSTYVQYWIRKS+ LVA+HSRG+QIP++ Sbjct: 322 QAGSLGVLQGAERFDHTRGYRFSTYVQYWIRKSLSALVARHSRGVQIPMA 371 >ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao] gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao] Length = 848 Score = 113 bits (283), Expect(3) = 1e-58 Identities = 53/102 (51%), Positives = 78/102 (76%) Frame = -1 Query: 700 TANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYS 521 T +R I IQ+AR+AL HGKYPD+ I++ TGLSLAKIRSA+KC R+VGSID+K+G Sbjct: 690 TLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDC 749 Query: 520 ISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 ++ K++EF PD +++ PE+ VMRQHM++ I +LL +++ + Sbjct: 750 MNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARER 791 Score = 83.2 bits (204), Expect(3) = 1e-58 Identities = 35/48 (72%), Positives = 45/48 (93%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 QAG+ GVLQG+E FDHTRGY+FSTYVQ+WIRKS+ ++VA+H+RGIQ+P Sbjct: 641 QAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVP 688 Score = 79.7 bits (195), Expect(3) = 1e-58 Identities = 40/64 (62%), Positives = 48/64 (75%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL+ RERQV+VLRYGL KSLEEIGR+F +KEWIR+IE A+ K+R +E RNL H Sbjct: 785 GLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLSH 844 Query: 234 YLIS 223 YL S Sbjct: 845 YLDS 848 >ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca subsp. vesca] Length = 545 Score = 111 bits (277), Expect(3) = 5e-58 Identities = 56/102 (54%), Positives = 73/102 (71%) Frame = -1 Query: 700 TANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYS 521 T ++ IN IQ+AR+A Y+ H KYPDD EI++ITGLSLAKI SAS+C R+VGS+D K+ Sbjct: 386 TLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWEC 445 Query: 520 ISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 + +MEFTPD ++ PEE VMRQHM+ I LL S+ K Sbjct: 446 SAGTYMEFTPDIAVETPEESVMRQHMKNDIHVLLEGLNSREK 487 Score = 82.8 bits (203), Expect(3) = 5e-58 Identities = 41/62 (66%), Positives = 49/62 (79%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GLN RE++VL LRYGL KSLEEIGR+F +KEWIRKIEK+ALTK+R +E +NL H Sbjct: 481 GLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKNLSH 540 Query: 234 YL 229 YL Sbjct: 541 YL 542 Score = 80.5 bits (197), Expect(3) = 5e-58 Identities = 36/48 (75%), Positives = 44/48 (91%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 QAGN G+LQG+E FD +RGY+FSTYVQYWIRKS+ +LVAQH+RGI+IP Sbjct: 337 QAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIP 384 >emb|CAD20832.1| sigma factor [Spinacia oleracea] Length = 548 Score = 108 bits (271), Expect(3) = 9e-58 Identities = 50/102 (49%), Positives = 74/102 (72%) Frame = -1 Query: 700 TANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYS 521 T + IN +Q+AR+ L GK+PDDVE+S+ TGLSL KI+SA C RIVGS+D+K+G+ Sbjct: 391 TLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHF 450 Query: 520 ISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 I++K++E TPDT ++ PE+ VM+QHM + +LL + K + Sbjct: 451 INMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKER 492 Score = 84.0 bits (206), Expect(3) = 9e-58 Identities = 35/52 (67%), Positives = 46/52 (88%) Frame = -3 Query: 962 ISQAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 + QAGN G+LQG+E FDHTRGYQFSTYVQYWIRK++ +LV++H RGI++P + Sbjct: 340 LMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTT 391 Score = 80.9 bits (198), Expect(3) = 9e-58 Identities = 37/61 (60%), Positives = 50/61 (81%) Frame = -2 Query: 411 LNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHHY 232 L+P+ER+VL+ RYGL +G C SL E+G++F +KEWIRK+EK ALTK+RT++ Q NL HY Sbjct: 487 LDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHY 545 Query: 231 L 229 L Sbjct: 546 L 546 >gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus] Length = 478 Score = 108 bits (269), Expect(3) = 1e-57 Identities = 52/102 (50%), Positives = 74/102 (72%) Frame = -1 Query: 700 TANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYS 521 T ++VIN + +AR+AL + +GKYPDD EI++ TGLS+AK+ SASKC R+VGSID+K+G Sbjct: 319 TLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKCLRVVGSIDQKIGEY 378 Query: 520 ISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 ++ K+ME DT++ PEE V+RQHM + LL E + K Sbjct: 379 MTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREK 420 Score = 85.9 bits (211), Expect(3) = 1e-57 Identities = 38/62 (61%), Positives = 53/62 (85%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV++LR+GL + QCKSLEEIGR+F+ +KEWIRKIE+SAL K+R ++ + L+H Sbjct: 414 GLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNH 473 Query: 234 YL 229 Y+ Sbjct: 474 YV 475 Score = 79.3 bits (194), Expect(3) = 1e-57 Identities = 35/48 (72%), Positives = 43/48 (89%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 QAGN GVLQG+E FD +RGY+FSTYVQYWIRKS+ LVA+H+RG++IP Sbjct: 270 QAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMSTLVAKHARGVRIP 317 >emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] Length = 611 Score = 104 bits (259), Expect(3) = 3e-57 Identities = 53/105 (50%), Positives = 67/105 (63%) Frame = -1 Query: 709 LQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKM 530 + T NR I IQ+AR+ALY HG+YPDD EI++ TGLSLAKIRSA C R+VGS D+ Sbjct: 450 IPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSF 509 Query: 529 GYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 +EFTPDT+IK PEE M+Q K I LL + + + Sbjct: 510 QDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRER 554 Score = 84.3 bits (207), Expect(3) = 3e-57 Identities = 39/62 (62%), Positives = 50/62 (80%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL+PRERQ+LVLRYG + Q KSLEEIGR F +KEWIRK+EK+AL +R +E+ +NL H Sbjct: 548 GLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRH 607 Query: 234 YL 229 Y+ Sbjct: 608 YV 609 Score = 83.6 bits (205), Expect(3) = 3e-57 Identities = 37/50 (74%), Positives = 45/50 (90%) Frame = -3 Query: 962 ISQAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 I QAGN GVLQG+E FDHT+GY+FSTYVQYWIRKS+ LVA+H+RG++IP Sbjct: 402 ILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIP 451 >ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera] Length = 561 Score = 104 bits (259), Expect(3) = 3e-57 Identities = 53/105 (50%), Positives = 67/105 (63%) Frame = -1 Query: 709 LQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKM 530 + T NR I IQ+AR+ALY HG+YPDD EI++ TGLSLAKIRSA C R+VGS D+ Sbjct: 400 IPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSF 459 Query: 529 GYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 +EFTPDT+IK PEE M+Q K I LL + + + Sbjct: 460 QDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRER 504 Score = 84.3 bits (207), Expect(3) = 3e-57 Identities = 39/62 (62%), Positives = 50/62 (80%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL+PRERQ+LVLRYG + Q KSLEEIGR F +KEWIRK+EK+AL +R +E+ +NL H Sbjct: 498 GLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRH 557 Query: 234 YL 229 Y+ Sbjct: 558 YV 559 Score = 83.6 bits (205), Expect(3) = 3e-57 Identities = 37/50 (74%), Positives = 45/50 (90%) Frame = -3 Query: 962 ISQAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 I QAGN GVLQG+E FDHT+GY+FSTYVQYWIRKS+ LVA+H+RG++IP Sbjct: 352 ILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIP 401 >ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max] Length = 551 Score = 111 bits (277), Expect(3) = 2e-54 Identities = 53/98 (54%), Positives = 73/98 (74%) Frame = -1 Query: 712 ILQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKK 533 ++ + NR IN IQ+AR+A+ S H K PDD EI+++TGLSL KI+SAS C RIV SID+K Sbjct: 389 VIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQK 448 Query: 532 MGYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELL 419 +G + V++ME PD TI+ PE+ VM+QHM K + +LL Sbjct: 449 VGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLL 486 Score = 78.6 bits (192), Expect(3) = 2e-54 Identities = 37/50 (74%), Positives = 44/50 (88%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FD TRGY+FSTYVQYWIRKSIL++VA+++RGI IP S Sbjct: 344 QAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWS 393 Score = 72.4 bits (176), Expect(3) = 2e-54 Identities = 35/62 (56%), Positives = 47/62 (75%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GLN RER++L LR+GL D Q +SL++IG +FK +KE IRKIEK ALTK++ + LH+ Sbjct: 488 GLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLHY 547 Query: 234 YL 229 YL Sbjct: 548 YL 549 >dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] Length = 571 Score = 102 bits (254), Expect(3) = 2e-54 Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R IN IQ+AR+ L + HG KY D EI+++TG S+ KIR+A++C ++VGSIDKK+G + Sbjct: 415 RTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFT 474 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 KF+EFTPDTT++ PEE VMRQ + I +LL E + K Sbjct: 475 TKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 514 Score = 80.1 bits (196), Expect(3) = 2e-54 Identities = 38/62 (61%), Positives = 49/62 (79%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL D + KSLEEIG++FK +KEWIRKIE+ A+ K+R Q +L + Sbjct: 508 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRY 567 Query: 234 YL 229 YL Sbjct: 568 YL 569 Score = 79.7 bits (195), Expect(3) = 2e-54 Identities = 35/50 (70%), Positives = 43/50 (86%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FDHTRGY+FSTYVQYWIRKS+ +V++H+RG+ IP S Sbjct: 363 QAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSS 412 >ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum] gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila] gi|557104759|gb|ESQ45093.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum] Length = 562 Score = 102 bits (255), Expect(3) = 5e-54 Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R ++ IQ+AR+ L + HG KYP D EIS+ TG SL KIR+A++C ++VGSIDKK+G + Sbjct: 406 RTMSQIQKARKTLKTSHGIKYPADEEISKETGYSLKKIRAANQCLKVVGSIDKKVGDCFT 465 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 KF+EFTPDTT++ PEE VMRQ + + +LL E + K Sbjct: 466 TKFLEFTPDTTMESPEEAVMRQSAWRDVHDLLQGLEPREK 505 Score = 82.4 bits (202), Expect(3) = 5e-54 Identities = 36/50 (72%), Positives = 44/50 (88%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAGN GVLQG+E FDHTRGY+FSTYVQYWIRKS+ +V++H+RG+ IP S Sbjct: 354 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVYIPSS 403 Score = 75.9 bits (185), Expect(3) = 5e-54 Identities = 37/62 (59%), Positives = 46/62 (74%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL + KSLEEIG++ K +KEWIRKIE+ A+ K+R Q NL Sbjct: 499 GLEPREKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQANAENLRF 558 Query: 234 YL 229 YL Sbjct: 559 YL 560 >ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 568 Score = 105 bits (263), Expect(3) = 9e-54 Identities = 53/100 (53%), Positives = 73/100 (73%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R IN IQ+AR+ L + HG KYP D +IS++T LS+ KIR+A++C ++VGSI+KK+G S Sbjct: 412 RTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFS 471 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 KF+EFTPDTT++ PEE VMRQ + I +LL E + K Sbjct: 472 TKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 511 Score = 79.7 bits (195), Expect(3) = 9e-54 Identities = 35/50 (70%), Positives = 43/50 (86%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FDHTRGY+FSTYVQYWIRKS+ +V++H+RG+ IP S Sbjct: 360 QAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSS 409 Score = 74.7 bits (182), Expect(3) = 9e-54 Identities = 35/62 (56%), Positives = 48/62 (77%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL + + KSLEEIG++ + +KEWIRKIE+ A+ K+R Q +L + Sbjct: 505 GLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRY 564 Query: 234 YL 229 YL Sbjct: 565 YL 566 >ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana] gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor C; Short=Sigma-C; AltName: Full=RNA polymerase sigma factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags: Precursor gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana] gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana] Length = 571 Score = 102 bits (254), Expect(3) = 1e-53 Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R IN IQ+AR+ L + HG KY D EI+++TG S+ KIR+A++C ++VGSIDKK+G + Sbjct: 415 RTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFT 474 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 KF+EFTPDTT++ PEE VMRQ + I +LL E + K Sbjct: 475 TKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 514 Score = 79.7 bits (195), Expect(3) = 1e-53 Identities = 35/50 (70%), Positives = 43/50 (86%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FDHTRGY+FSTYVQYWIRKS+ +V++H+RG+ IP S Sbjct: 363 QAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSS 412 Score = 77.8 bits (190), Expect(3) = 1e-53 Identities = 37/62 (59%), Positives = 48/62 (77%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL D + KSLEEIG++ K +KEWIRKIE+ A+ K+R Q +L + Sbjct: 508 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 567 Query: 234 YL 229 YL Sbjct: 568 YL 569 >gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] Length = 291 Score = 102 bits (254), Expect(3) = 1e-53 Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R IN IQ+AR+ L + HG KY D EI+++TG S+ KIR+A++C ++VGSIDKK+G + Sbjct: 135 RTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFT 194 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 KF+EFTPDTT++ PEE VMRQ + I +LL E + K Sbjct: 195 TKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 234 Score = 79.7 bits (195), Expect(3) = 1e-53 Identities = 35/50 (70%), Positives = 43/50 (86%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FDHTRGY+FSTYVQYWIRKS+ +V++H+RG+ IP S Sbjct: 83 QAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSS 132 Score = 77.8 bits (190), Expect(3) = 1e-53 Identities = 37/62 (59%), Positives = 48/62 (77%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL D + KSLEEIG++ K +KEWIRKIE+ A+ K+R Q +L + Sbjct: 228 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 287 Query: 234 YL 229 YL Sbjct: 288 YL 289 >ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris] gi|561034783|gb|ESW33313.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris] Length = 538 Score = 104 bits (260), Expect(3) = 3e-53 Identities = 53/106 (50%), Positives = 75/106 (70%) Frame = -1 Query: 712 ILQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKK 533 I+ + NR I IQ+AR+ L S H K PDD EI+++TGLSL KI+SAS C RIV SID+K Sbjct: 377 IIPWSLNRAIKQIQKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQK 436 Query: 532 MGYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 +G + S+++ E PDTTI+ PE V++QHM+K + +LL S+ + Sbjct: 437 VG-NFSIEYNELLPDTTIESPENGVLKQHMKKDVHDLLKGLNSRER 481 Score = 77.0 bits (188), Expect(3) = 3e-53 Identities = 36/50 (72%), Positives = 43/50 (86%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FD TRGY+FSTYVQYWIRKSIL++V ++SRG+ IP S Sbjct: 332 QAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPWS 381 Score = 77.0 bits (188), Expect(3) = 3e-53 Identities = 38/62 (61%), Positives = 48/62 (77%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GLN RERQ+L LR+GL D Q KSL++IG +FK +KE IRKIEK ALTK+R + +LH+ Sbjct: 475 GLNSRERQILSLRFGLIDNQPKSLQDIGTLFKVSKERIRKIEKIALTKLRNEATTSDLHY 534 Query: 234 YL 229 YL Sbjct: 535 YL 536 >gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis] Length = 476 Score = 100 bits (249), Expect(3) = 4e-53 Identities = 53/111 (47%), Positives = 71/111 (63%) Frame = -1 Query: 727 HVSLFILQMTANRVINLIQRARRALYSLHGKYPDDVEISRITGLSLAKIRSASKCPRIVG 548 H ++ T ++ IN IQ+ R+A+ + K PDD EI+++TGLSL KIRSA C R+VG Sbjct: 310 HARGILVPGTLSKAINQIQKTRKAISNSQRKPPDDNEIAKLTGLSLDKIRSAGNCLRVVG 369 Query: 547 SIDKKMGYSISVKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 SID K+G S K MEF D +IK PEE VMRQHM+ I LL + + + Sbjct: 370 SIDHKIGDCFSGKNMEFMADMSIKTPEETVMRQHMKSDIHNLLETLDPRER 420 Score = 81.6 bits (200), Expect(3) = 4e-53 Identities = 42/61 (68%), Positives = 49/61 (80%) Frame = -2 Query: 411 LNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHHY 232 L+PRERQVLVLRYGL + Q KSLEEIG++FK +KEWIRKIEK ALTK+R E + HY Sbjct: 415 LDPRERQVLVLRYGLINCQPKSLEEIGKLFKVSKEWIRKIEKKALTKLR-DETNEDFSHY 473 Query: 231 L 229 L Sbjct: 474 L 474 Score = 75.9 bits (185), Expect(3) = 4e-53 Identities = 33/43 (76%), Positives = 40/43 (93%) Frame = -3 Query: 941 GVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIP 813 GVLQG+E FDHTRGY+FSTYVQYWIRKS+ +LVA+H+RGI +P Sbjct: 275 GVLQGAERFDHTRGYRFSTYVQYWIRKSMSQLVARHARGILVP 317 >ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella] gi|482559522|gb|EOA23713.1| hypothetical protein CARUB_v10016920mg [Capsella rubella] Length = 581 Score = 102 bits (253), Expect(3) = 4e-52 Identities = 51/100 (51%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R IN IQ+AR+ L + HG KYP D EIS++T LS+ KIR+A++C ++VGSI+ K+G S Sbjct: 425 RTINQIQKARKTLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFS 484 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 KF+EFTPDT ++ PEE VMRQ + + +LL E + K Sbjct: 485 TKFLEFTPDTMMESPEEAVMRQSARRDLHDLLEGLEPREK 524 Score = 77.4 bits (189), Expect(3) = 4e-52 Identities = 34/50 (68%), Positives = 42/50 (84%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FDH RGY+FSTYVQYWIRKS+ +V++H+RG+ IP S Sbjct: 373 QAGFVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSS 422 Score = 75.5 bits (184), Expect(3) = 4e-52 Identities = 35/62 (56%), Positives = 48/62 (77%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL D + KSLEEIG++ + +KEWIR+IE+ A+ K+R Q +L + Sbjct: 518 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRRIERRAMAKLRDQPNAEDLRY 577 Query: 234 YL 229 YL Sbjct: 578 YL 579 >emb|CAB83107.1| sigma factor 3 [Sinapis alba] Length = 567 Score = 96.7 bits (239), Expect(3) = 2e-50 Identities = 49/100 (49%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Frame = -1 Query: 691 RVINLIQRARRALYSLHG-KYPDDVEISRITGLSLAKIRSASKCPRIVGSIDKKMGYSIS 515 R ++ IQ+AR+ L + G KYP D EIS++TG SL KIR+A++C ++VGSIDKK+G + Sbjct: 411 RTMSQIQKARKTLKTSQGIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKVGDCFT 470 Query: 514 VKFMEFTPDTTIKPPEEVVMRQHMEKSIFELLLRFESKRK 395 +F+EFTPD T++ PEE VMRQ + LL E + K Sbjct: 471 TRFLEFTPDPTMESPEEAVMRQSARGEVHNLLEGLEPREK 510 Score = 79.0 bits (193), Expect(3) = 2e-50 Identities = 34/50 (68%), Positives = 43/50 (86%) Frame = -3 Query: 956 QAGNTGVLQGSELFDHTRGYQFSTYVQYWIRKSILKLVAQHSRGIQIPVS 807 QAG GVLQG+E FDHTRGY+FSTYV+YWIRKS+ +V++H+RG+ IP S Sbjct: 359 QAGYVGVLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHIPAS 408 Score = 73.6 bits (179), Expect(3) = 2e-50 Identities = 37/62 (59%), Positives = 46/62 (74%) Frame = -2 Query: 414 GLNPRERQVLVLRYGLWDGQCKSLEEIGRIFKCTKEWIRKIEKSALTKVRTQEVQRNLHH 235 GL PRE+QV+VLRYGL D KSLEEIG+I + +KE IRKIE+ A+ K+R Q NL + Sbjct: 504 GLEPREKQVMVLRYGLQDYSPKSLEEIGKILRVSKEGIRKIERRAMAKLRDQPKADNLRY 563 Query: 234 YL 229 YL Sbjct: 564 YL 565