BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00002891
         (1317 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    64   3e-26
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    58   4e-24
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    57   3e-22
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            57   6e-22
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    56   5e-21
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    55   4e-17
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                60   1e-16
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    65   4e-14
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    63   2e-13
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 53   2e-13
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        54   8e-13
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    60   1e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    55   2e-12
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    59   5e-12
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    58   7e-12
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    62   1e-11
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    56   2e-11
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            50   4e-11
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    53   5e-11
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    54   5e-11

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 64.3 bits (155), Expect(3) = 3e-26
 Identities = 41/137 (29%), Positives = 67/137 (48%)
 Frame = +2

Query: 842  LMWRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTS 1021
            L+W     +L T D +         TC+ C    E  DHLF  C ++S +W ++ +R  S
Sbjct: 1370 LLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLS 1429

Query: 1022 SPSRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERNSKKFR*KGSTQAMII 1201
            + + S  W+++   +    +  D +  L   V QASIYHIWRERN+++     S    +I
Sbjct: 1430 T-NYSRDWNRLFTLLCTSNLPRD-HLFLFRYVFQASIYHIWRERNARRHGEISSPTNRLI 1487

Query: 1202 KNIKWDAKSRLQVVMRT 1252
            K I    ++R+  +  T
Sbjct: 1488 KLIDKTVRNRISSIRDT 1504



 Score = 52.0 bits (123), Expect(3) = 3e-26
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +1

Query: 235  RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNSL 414
            +PK+EGGL I++  + NK S LKL+W++ S Q S+W+ W+          WT      + 
Sbjct: 1164 QPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWI----------WTFIIRKGTF 1213

Query: 415  WCGRNCSNI 441
            W     S++
Sbjct: 1214 WSANERSSL 1222



 Score = 50.8 bits (120), Expect(3) = 3e-26
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
 Frame = +3

Query: 417  VWKKLLKHHPLATSL--IRSISNQGTSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
            +WKKLLK+  LA S+  +   +   TSFWYD+W   G L  I      +  G+  E+ + 
Sbjct: 1226 MWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLE 1285

Query: 591  QYLSAEGWRVPISRNAVMNVIWEECK--SRPKLPFSKEVLLCGCLL--YQDPFIL-LQLG 755
              L     R    R A+ N I  E +   + +     ++ L   L   +   FI  +   
Sbjct: 1286 TVLRTHQHRQ--HRAAIYNRINAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWN 1343

Query: 756  KVRVKFPPYHGWKLIWFPESIPRHSSLVLL 845
             VR   P  + +K +WFP S P++S L+ L
Sbjct: 1344 NVRTHQPQQNWYKGVWFPYSTPKYSFLLWL 1373


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
            At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 58.2 bits (139), Expect(3) = 4e-24
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
 Frame = +2

Query: 842  LMWRLSLQKLPTMDSLFKIKIVN*NT---CSFCWTGVEDDDHLFSKCTFSSSIWSSIIKR 1012
            L W +   ++ T +   K+ + N NT   C FC    E  +HLF +C ++  +W+ +IK 
Sbjct: 232  LTWLMVRNRIATGE---KMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLIKG 288

Query: 1013 CTSSPSRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERNSKKFR*KGSTQA 1192
                   S +W  I   + ++  F  +   ++  VLQ SI+ IWRER+ ++     S + 
Sbjct: 289  LLLD-KYSDRWQDIILMLTRKD-FDTTKSFILGYVLQNSIHSIWRERDDRRHGEDPSNEE 346

Query: 1193 MIIKNIKWDAKSRLQVVMR 1249
             +IK I  + ++RL  + R
Sbjct: 347  RLIKFIDKNIRNRLSTLRR 365



 Score = 52.0 bits (123), Expect(3) = 4e-24
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +1

Query: 238 PKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQD 399
           PK EGGL +R  ++ NK  +LKL+W+I S + S+W+ WV    ++    W V++
Sbjct: 27  PKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKE 80



 Score = 49.7 bits (117), Expect(3) = 4e-24
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSL--IRSISNQGTSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKKLLK+   A     +   + + TSFWYD+W   G LY        +  G+ K+S +S
Sbjct: 88  IWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSLGCLYDKFGERGCIDMGIPKDSTLS 147

Query: 591 QYLSAEGWRVPISRNAVMNVIWEECKSRPKLPFSKEVLLCGCLLYQDPFILLQLGK---- 758
             +     R    R  ++N +  E + + +     E  +      +D F    L K    
Sbjct: 148 SAIMTTRRRK--HRQPLLNAVETEIQKQKQSRIVTERDVALWKGKEDGFHPTFLSKETWS 205

Query: 759 -VRVKFPPYHGWKLIWFPESIPRHSSLVLL 845
            +R   P   G++ IWF  + P+++ L  L
Sbjct: 206 QIRNTQPEMQGYRGIWFSNATPKYALLTWL 235


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score = 56.6 bits (135), Expect(3) = 3e-22
 Identities = 30/103 (29%), Positives = 44/103 (42%)
 Frame = +2

Query: 848  WRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSSP 1027
            W   L +LPT   L    +V+   C  C    E  DHL   C FSS +W  +  R     
Sbjct: 928  WTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQ 987

Query: 1028 SRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERN 1156
                 W ++  W  +    + S   L  +V Q  +Y++WR+RN
Sbjct: 988  RLLCTWAELLSWTRQSTAAAPS--LLRKVVAQLVVYNLWRQRN 1028



 Score = 55.5 bits (132), Expect(3) = 3e-22
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
 Frame = +3

Query: 420  WKKLLKHHPLATSLIRS-ISNQGT-SFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVSQ 593
            WK LL   PLA   I++ + N GT SFW+D W   G L   +  +      +   +KV+ 
Sbjct: 782  WKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVAD 841

Query: 594  YLSAEGWRVPISRNAVMNVIWEECKSRP---KLPFSKEVLLCGCLLYQDPFILLQLGKVR 764
             +   GWR+P+SR+   + I     S P    L  S     C   +    F   +  +V 
Sbjct: 842  AIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVL 901

Query: 765  VKFPPYHGW-KLIWFPESIPRHS 830
                P   W K +WF  ++P+H+
Sbjct: 902  RPRRPVKRWAKSVWFKGAVPKHA 924



 Score = 41.6 bits (96), Expect(3) = 3e-22
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +1

Query: 238 PKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNSLW 417
           PK EGGL  R+  + NK  +L+L+W +  +  S+W +W     +     W V       W
Sbjct: 721 PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPW 780

Query: 418 CGRNCSNI 441
             +   N+
Sbjct: 781 TWKMLLNL 788


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 56.6 bits (135), Expect(3) = 6e-22
 Identities = 30/103 (29%), Positives = 44/103 (42%)
 Frame = +2

Query: 848  WRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSSP 1027
            W   L +LPT   L    +V+   C  C    E  DHL   C FSS +W  +  R     
Sbjct: 928  WTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQ 987

Query: 1028 SRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERN 1156
                 W ++  W  +    + S   L  +V Q  +Y++WR+RN
Sbjct: 988  RLLCTWAELLSWTRQSTAAAPS--LLRKVVAQLVVYNLWRQRN 1028



 Score = 54.3 bits (129), Expect(3) = 6e-22
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
 Frame = +3

Query: 420  WKKLLKHHPLATSLIRS-ISNQGT-SFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVSQ 593
            WK LL   PLA   I++ + N GT SFW+D W   G L   +  +      +   +KV+ 
Sbjct: 782  WKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVAD 841

Query: 594  YLSAEGWRVPISRNAVMNVIWEECKSRP---KLPFSKEVLLCGCLLYQDPFILLQLGKVR 764
             +   GWR+P+SR+   + I     S P    L  S     C   +    F   +  +V 
Sbjct: 842  AIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVL 901

Query: 765  VKFPPYHGW-KLIWFPESIPRHS 830
                P   W + +WF  ++P+H+
Sbjct: 902  RPRRPVKRWARSVWFKGAVPKHA 924



 Score = 41.6 bits (96), Expect(3) = 6e-22
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +1

Query: 238 PKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNSLW 417
           PK EGGL  R+  + NK  +L+L+W +  +  S+W +W     +     W V       W
Sbjct: 721 PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPW 780

Query: 418 CGRNCSNI 441
             +   N+
Sbjct: 781 TWKMLLNL 788


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 56.2 bits (134), Expect(3) = 5e-21
 Identities = 31/134 (23%), Positives = 62/134 (46%)
 Frame = +2

Query: 842  LMWRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTS 1021
            + W  +  +L T D +         +C FC    E  +HLF  C +S  +WS +  +  +
Sbjct: 291  ITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLT 350

Query: 1022 SPSRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERNSKKFR*KGSTQAMII 1201
                S  W  I K +  + +  ++   L+    Q  +Y IW+ERNS++   +    A+++
Sbjct: 351  R-HYSTDWTTILKLLTDKTL-GNNRLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALLL 408

Query: 1202 KNIKWDAKSRLQVV 1243
            K +  + +++L  +
Sbjct: 409  KRLDKEVRNKLSTI 422



 Score = 48.9 bits (115), Expect(3) = 5e-21
 Identities = 20/54 (37%), Positives = 35/54 (64%)
 Frame = +1

Query: 238 PKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQD 399
           PKEEGGL +R+  + NK   LKL+W++ S   S+W++W+    ++    W+++D
Sbjct: 88  PKEEGGLGLRSLTEANKVCCLKLIWRLLS-SSSLWVQWLRQYVIRKGSFWSLRD 140



 Score = 44.3 bits (103), Expect(3) = 5e-21
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIR-SISN-QGTSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +W+KLLK+  LA+   +  I N +G SFW+DNW P G L  I      +  G+   + V+
Sbjct: 148 MWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDIHATVA 207

Query: 591 QYLSAEGWRVPISRNAVMNVIWEECKSRPKLPFSKEVLLCGCLLYQDPFILLQ--LGKVR 764
           + L+    R        M    EE +++  +     VL  G      P    +      R
Sbjct: 208 EALTHRRRRHRADHLNQMEAQLEELRTKGLVETEDVVLWKGKGGRFKPSFSTKETWADTR 267

Query: 765 VKFPPYHGWKLIWFPESIPRHSSLVLL 845
            + P    ++ IWF  + P++S +  L
Sbjct: 268 EQKPRNEWYQGIWFSHATPKYSFITWL 294


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 55.5 bits (132), Expect(3) = 4e-17
 Identities = 36/124 (29%), Positives = 56/124 (45%)
 Frame = +2

Query: 845  MWRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSS 1024
            +W  +L +L T D +   K V+  +C FC    +  DHLF  C +SS +W+   K   ++
Sbjct: 1297 VWLAALDRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAKNILTT 1356

Query: 1025 PSRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERNSKKFR*KGSTQAMIIK 1204
               +  W  +    V     +     LV    QAS+Y IW ERN ++    G+T     +
Sbjct: 1357 -RFTTDWHLLLN-TVSSLQQNRVENFLVRYAFQASVYSIWSERNRRR---HGNTLHSATR 1411

Query: 1205 NIKW 1216
             I W
Sbjct: 1412 LIGW 1415



 Score = 43.1 bits (100), Expect(3) = 4e-17
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
 Frame = +3

Query: 417  VWKKLLKHHPLAT--SLIRSISNQGTSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
            +WKKLLK+  +A   S I   + Q TSFWYD+W   G +   I     +  G++++  V+
Sbjct: 1153 MWKKLLKYREVAKTFSKIEVHNGQRTSFWYDDWSCMGRIMNFIGDKGIIDLGIKRDKLVA 1212

Query: 591  QYLSAEGWRVPIS--RNAVMNVIWEECKSRPKLPFSKEVLLCGCLLYQDPFILLQL-GKV 761
            +       R  I+   N V NVI    K+  K      V      +Y+  F        +
Sbjct: 1213 EVWDTHRSRRHITDYLNQVENVI-ATSKANRKEKADDVVWRGRNDIYKPQFSTRDTWNNI 1271

Query: 762  RVKFPPYHGWKLIWFPESIPRHSSLVLL 845
            R        +K +WF ++ P+ S  V L
Sbjct: 1272 RTTATKVTWYKGVWFYQATPKFSFCVWL 1299



 Score = 37.4 bits (85), Expect(3) = 4e-17
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 283  NKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQ 396
            N    LKL+W+I S  DS+W++W+    +K    W ++
Sbjct: 1107 NDVCCLKLIWRILSHGDSLWVKWIETNLLKNNSFWIIK 1144


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 60.1 bits (144), Expect(3) = 1e-16
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPN 408
           +PK EGGL +R+ K+ N    LKL+W+I S  DS+W++WV    +K E  W V+++ N
Sbjct: 420 KPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENAN 477



 Score = 40.4 bits (93), Expect(3) = 1e-16
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKK+LK+  +A    ++    G  TSFW+D+W   G L  +      +  G+ +   V 
Sbjct: 482 IWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLIDVAGIRGTIDMGISRTMSV- 540

Query: 591 QYLSAEGW---RVPISRNAVMNVIWE----ECKSRPKLPFSKEVLLCGCL-LYQDPFILL 746
               A+ W   R    R  ++N I E    + + R +      VL  G   +Y+D F   
Sbjct: 541 ----ADAWTSRRRRHHRQEILNTIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTK 596

Query: 747 QLGKVRVKFPPYHGW-KLIWFPESIPRHS 830
                         W K +WFP + P++S
Sbjct: 597 NTWNYLRTTSNEVAWHKGVWFPHATPKYS 625



 Score = 33.9 bits (76), Expect(3) = 1e-16
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +2

Query: 845  MWRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSS 1024
            +W  +  +L T   + K        C+FC  G+E  DHLF       S+ SS  +R    
Sbjct: 628  LWLAAHDRLATGARMIKWNRGETGDCTFCRQGIETRDHLFFMQLHIGSLDSSCQRRLQHK 687

Query: 1025 PSRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQAS--IYHIWRERNSKKFR 1171
            P + L  +    +  +      SN  L H +  +S  I+H+  E+  + +R
Sbjct: 688  PLKQLVPNHHLCYAAQAL----SNRELPHQIHPSSHCIHHLEGEKQKQTWR 734


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 60.5 bits (145), Expect(2) = 4e-14
 Identities = 23/56 (41%), Positives = 39/56 (69%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDH 402
           +PK+EGGL +++ ++ NK S LKL+W++ S QDS+W++W     +K E  W++  H
Sbjct: 588 KPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTH 643



 Score = 45.4 bits (106), Expect(2) = 4e-14
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +W++LLKH  +A S  +   N G  TSFW+DNW  KG L  +      +  G+ +   + 
Sbjct: 650 IWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTL- 708

Query: 591 QYLSAEGW 614
               AE W
Sbjct: 709 ----AEAW 712



 Score = 65.1 bits (157), Expect = 7e-08
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
 Frame = +2

Query: 848  WRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSSP 1027
            W     +L T D +         TC FC + +E  DHLF +C +SS IW+SI K      
Sbjct: 796  WLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKN-VYKD 854

Query: 1028 SRSLKWDQIAKWMVKEFIFSDS-----NGALVHLVLQASIYHIWRERNSKKFR*KGSTQA 1192
              S KW  +  ++      SDS        L     Q SI+ IWRERNS++   K  + +
Sbjct: 855  RFSTKWSAVVNYI------SDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSAS 908

Query: 1193 MIIKNIKWDAKSRLQVVMR 1249
             +I+ I    +++L  + +
Sbjct: 909  NLIRQIDKTIRNQLSTIKK 927


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 62.8 bits (151), Expect(2) = 2e-13
 Identities = 24/56 (42%), Positives = 39/56 (69%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDH 402
           +PK+EGGL +R+ K+ N  S LKL+W+I S  DS+W++W+H   +K    W V+++
Sbjct: 249 KPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVREN 304



 Score = 41.2 bits (95), Expect(2) = 2e-13
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKK+LK    A  L ++  N G  T FWYDNW   G L  I      +  G++K + + 
Sbjct: 311 MWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRLIDIAGDRGVIDMGIKKHATM- 369

Query: 591 QYLSAEGWRVPISRNAVMNVIWE 659
               A+ W     R   M V WE
Sbjct: 370 ----ADAWGNRRRRRHRMEV-WE 387


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 53.1 bits (126), Expect(2) = 2e-13
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +1

Query: 241 KEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQD 399
           K+EGGL I++  + NK S LKL+W++ S+Q S+W+ WV    ++    W+  D
Sbjct: 442 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSAND 494



 Score = 50.4 bits (119), Expect(2) = 2e-13
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSL--IRSISNQGTSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKKLLK+  +A S+  +   S   TSFWYDNW   G L  +      +  G+   + V+
Sbjct: 502 MWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVA 561

Query: 591 QYLSAEGWRVPISRNAVMNVIWEECKS--RPKLPFSKEVLL---CGCLLYQDPFILLQLG 755
             L++   R    R A+ N I  E +S  + +   + ++ L    G    Q     +   
Sbjct: 562 TVLASH--RTKHHRTAIYNKIEAEIQSILQRERSGAPDIFLWRSSGDNFRQSFITKVTWH 619

Query: 756 KVRVKFPPYHGWKLIWFPESIPRHSSLVLL 845
            +RV       +K +WF  + P++S L+ L
Sbjct: 620 NIRVIHTHRQWYKGVWFSYNTPKYSFLLWL 649


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 53.9 bits (128), Expect(2) = 8e-13
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +3

Query: 420  WKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVSQ 593
            WK+LL   PLA   +      G    +WYDNW   G L+ II  +   S  V   +KV+ 
Sbjct: 922  WKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVAS 981

Query: 594  YLSAEGWRVPISRNA 638
              S +GWR+P+SR+A
Sbjct: 982  AFSEDGWRLPVSRSA 996



 Score = 47.8 bits (112), Expect(2) = 8e-13
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 238  PKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNSLW 417
            PK EGGL +R   + NK   ++L+W++   +DS+W  W H  ++     W V+   +  W
Sbjct: 861  PKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSW 920


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 59.7 bits (143), Expect(2) = 1e-12
 Identities = 25/59 (42%), Positives = 40/59 (67%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNS 411
           +PK+EGGL +R+  + N  S+LKL+W++TS  DS+W++W     +K E  W++   PNS
Sbjct: 272 KPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLT--PNS 328



 Score = 41.6 bits (96), Expect(2) = 1e-12
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKK+LK+   A    R   N G  TSFW+DNW   G L  +     ++  G+ +   V 
Sbjct: 334 MWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTV- 392

Query: 591 QYLSAEGW 614
               AE W
Sbjct: 393 ----AEAW 396



 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 30/111 (27%), Positives = 57/111 (51%)
 Frame = +2

Query: 920  CSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSSPSRSLKWDQIAKWMVKEFIFSDSNG 1099
            C+FC T +E  DHLF  C+++S+IW++I K        S  W  I  + + E        
Sbjct: 504  CTFCSTSIETRDHLFFSCSYASAIWTAIAKNVLQH-RFSTDWQTIVNY-ISETQTDRIRS 561

Query: 1100 ALVHLVLQASIYHIWRERNSKKFR*KGSTQAMIIKNIKWDAKSRLQVVMRT 1252
             L   + Q +++ +W+ERN ++   +  T A +I  +    +++L +++ T
Sbjct: 562  FLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLISWMDKQIRNQLSIIIST 612


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 55.1 bits (131), Expect(2) = 2e-12
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +1

Query: 235  RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQ 396
            +PK+EGGL +R+ K+ N    LKL+WKI S  +S+W++WV    ++    W V+
Sbjct: 867  KPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920



 Score = 45.1 bits (105), Expect(2) = 2e-12
 Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
 Frame = +3

Query: 417  VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
            +WKKLLK+  +A +L +     G  TSFWYDNW   G L         +  G+ +   V 
Sbjct: 929  IWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVE 988

Query: 591  QYLSAEGW---RVPISRNAVMNVIWEECKSR--PKLPFSKEVLLCG-------CLLYQDP 734
                 E W   R    RN V NVI +  K     +     +VL  G           +D 
Sbjct: 989  -----EAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDT 1043

Query: 735  FILLQLGKVRVKFPPYHGWKLIWFPESIPRHS 830
            +   +    RV   P+H  K+IWF  + P++S
Sbjct: 1044 WHHTRSTSARV---PWH--KVIWFSHATPKYS 1070


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 58.9 bits (141), Expect(2) = 5e-12
 Identities = 23/56 (41%), Positives = 37/56 (66%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDH 402
           +PKEEGGL +R+ K+ N    LKL+W+I S  DS+W++W+    +K    W V+++
Sbjct: 116 KPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVREN 171



 Score = 40.0 bits (92), Expect(2) = 5e-12
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKV- 587
           +W+K+LK   +A +L +   N G  TSFWYD+W   G L         +  G+ K + V 
Sbjct: 178 MWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVV 237

Query: 588 ------------SQYLSAEGWRVPISRN----AVMNVIWEECKSRPKLPFSKEVLLCGCL 719
                       + +L+    R+ +S N    A    +W+  ++R +  FS         
Sbjct: 238 EAWGNRRRRRHRTNFLNRVEERLILSWNSRNQAEDRALWKGKENRFRSIFST-------- 289

Query: 720 LYQDPFILLQLGKVRVKFPPYHGWKLIWFPESIPRHS 830
             +D +  ++    +V +     +K +WF ++IP+H+
Sbjct: 290 --KDTWNHIRTVSNKVAW-----YKGVWFAQAIPKHA 319


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 58.2 bits (139), Expect(2) = 7e-12
 Identities = 23/56 (41%), Positives = 37/56 (66%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDH 402
           +PKEEGGL +R+ K+ N    LKL+W+I S  DS+W++W+    +K    W V+++
Sbjct: 197 KPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVREN 252



 Score = 40.4 bits (93), Expect(2) = 7e-12
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +W+K+LK   +A +L +   N G  TSFWYD+W   G L         +  G+ K + V 
Sbjct: 259 MWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRLIESAGDRGAIDLGINKHATV- 317

Query: 591 QYLSAEGWRVPISRNAVMNVIWEECKSRPKLPFSKEVLLCGCLLY---QDPFILLQLGK- 758
                E W     R    N +    + R  L ++       C L+   ++ F  +   K 
Sbjct: 318 ----VEAWGNRRRRRHRANFL-NRVEERLVLSWNSRNQAEDCALWKGKENRFRSIFSTKD 372

Query: 759 ----VRVKFPPYHGWKLIWFPESIPRHS 830
               +R        +K +WF ++IP+H+
Sbjct: 373 TWNHIRTVSNKVAWYKGVWFAQAIPKHA 400


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score = 62.0 bits (149), Expect(2) = 1e-11
 Identities = 32/105 (30%), Positives = 48/105 (45%)
 Frame = +2

Query: 845  MWRLSLQKLPTMDSLFKIKIVN*NTCSFCWTGVEDDDHLFSKCTFSSSIWSSIIKRCTSS 1024
            MW   L +LPT   L    +     C  C +  E  DHL   C FS+ IW  +  R T S
Sbjct: 939  MWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPS 998

Query: 1025 PSRSLKWDQIAKWMVKEFIFSDSNGALVHLVLQASIYHIWRERNS 1159
             +    W ++  W       S +   L  +  QAS++H+W++RN+
Sbjct: 999  QAIFNSWAELLSW--TRINSSKAPSLLRKIAAQASVFHLWKQRNN 1041



 Score = 35.4 bits (80), Expect(2) = 1e-11
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
 Frame = +3

Query: 489  SFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVSQYLSAEGWRV--PISRNAVMNVIWEE 662
            SFW+DNW P G L+ +       +  +  ++KV+   S  GW +  P +  A+  +I   
Sbjct: 819  SFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLT 878

Query: 663  CKSRPKLPFSKEVLLCGCLLYQDPFILLQLGKVRV------KFPPYHGWKLIWFPESIPR 824
              + P    S +      +   D F        R       K P     K +WF  S+P+
Sbjct: 879  TIALPCFDSSPDTF----VWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPK 934

Query: 825  HS 830
            H+
Sbjct: 935  HA 936


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 56.2 bits (134), Expect(2) = 2e-11
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNSL 414
           RPK EGGL +++ K+ N    LKL+W+I S+ DS+W++W+    +K    W+ +      
Sbjct: 385 RPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGS 444

Query: 415 W 417
           W
Sbjct: 445 W 445



 Score = 40.8 bits (94), Expect(2) = 2e-11
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKKLLK+   A +  +     G   SFWYD+W  KG L  ++    +   G+ K   + 
Sbjct: 446 MWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKGRLIDVLGERGQFDMGISKFKTL- 504

Query: 591 QYLSAEGW---RVPISRNAVMNVIWEE 662
               AE W   R    R   +N I +E
Sbjct: 505 ----AEAWDRRRSRYHRAETLNTIEQE 527


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 49.7 bits (117), Expect(2) = 4e-11
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +1

Query: 238 PKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTV 393
           PK+EGGL IR+ K+ NK S+LKL+W++ S   S+W++W+    ++    W++
Sbjct: 124 PKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSI 174



 Score = 46.2 bits (108), Expect(2) = 4e-11
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 417 VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
           +WKK+LKH  LA+  ++   + G  TSFW+DNW   G L  +  H   +  G+   + V+
Sbjct: 184 MWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVA 243

Query: 591 Q 593
           +
Sbjct: 244 E 244


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 53.1 bits (126), Expect(2) = 5e-11
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +1

Query: 241  KEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQD 399
            K+EGGL I++  + NK S LKL+W++ S+Q S+W+ WV    ++    W+  D
Sbjct: 1011 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSAND 1063



 Score = 42.4 bits (98), Expect(2) = 5e-11
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 417  VWKKLLKHHPLATSL--IRSISNQGTSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
            +WKKLL +  +A S+  +   S   TSFWYDNW     L  +      +  G+   + V+
Sbjct: 1071 MWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQLRQLVDVTNARRTIDMGIPLAATVA 1130

Query: 591  QYLSAEGWRVPISRNAVMNVIWEECKS 671
              L++   R    R A+ N I  E +S
Sbjct: 1131 TVLASH--RTKQHRTAIYNKIEAEIQS 1155


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 53.9 bits (128), Expect(2) = 5e-11
 Identities = 24/59 (40%), Positives = 40/59 (67%)
 Frame = +1

Query: 235 RPKEEGGLNIRNPKDMNKASILKLMWKITSKQDSIWIRWVHGRYVK*ERKWTVQDHPNS 411
           +PK+ GGL +R+  + N  S+LKL+W++TS  DS+W++W     +K E  W+++  PNS
Sbjct: 784 KPKQ-GGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLK--PNS 839



 Score = 41.6 bits (96), Expect(2) = 5e-11
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 417  VWKKLLKHHPLATSLIRSISNQG--TSFWYDNWHPKGVLYGIIPHLIRLSSGVQKESKVS 590
            +WKK+LK+   A    R   N G  TSFW+DNW   G L  +     ++  G+ +   V 
Sbjct: 845  MWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTV- 903

Query: 591  QYLSAEGW 614
                AE W
Sbjct: 904  ----AEAW 907