BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00000907
         (3580 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1468   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1466   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...  1457   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1442   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1436   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1436   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1429   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1418   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...  1367   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...  1362   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1360   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1355   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...  1347   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1337   0.0  
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...  1334   0.0  
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...  1331   0.0  
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...  1331   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...  1329   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1329   0.0  
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...  1323   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1468 bits (3800), Expect = 0.0
 Identities = 735/1140 (64%), Positives = 881/1140 (77%), Gaps = 4/1140 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP+ V+AEAVK+FLE+  G  TVYAL++R  K KGV  R +AIVQFTT  +
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK-KGVG-RLYAIVQFTTKEA 58

Query: 3293 AELISSLI--NQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGL 3120
            A+ I SL    + L YG SYL    +E D V +PR  M ++E   LHFGC++S+EKF  L
Sbjct: 59   ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118

Query: 3119 WKGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAA 2940
            W+GV   VNFGFG+RK+ FLL H G EY+LE+ Y++IW I+L  PR    K+LLIQ+L A
Sbjct: 119  WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178

Query: 2939 PKIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFP 2760
            P+I++K              ++FK+  +DQWVR TDFT S  IGQS+ +C+ELPY  E P
Sbjct: 179  PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238

Query: 2759 PQIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCL 2580
               +ENF YYKE E +F +E+GS++S +LDLVPIVGPP GI LPYE+LFKINLLVQNGC+
Sbjct: 239  -DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCV 297

Query: 2579 AGPTLDAPFFASVNPQFIPSAY--IEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFP 2406
            AGP LD+ F+  V+P   P +   IEHAL++LYHL ECCYEP +WL +QY KY  S   P
Sbjct: 298  AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKP 357

Query: 2405 NAPGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEK 2226
            ++P ISL DGLVY+ RVQ+TPS+VYFC PE+ VSNRVLR++   +DNF+R+SF+DE+ +K
Sbjct: 358  SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 417

Query: 2225 LRSTDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFAS 2046
            + STDLSPR S   D   T IY RILSTLRNGI+IGD+KF+ LAFSSSQLRESSAWMFAS
Sbjct: 418  IHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 477

Query: 2045 KDGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGV 1866
            + GLTAA IREWMG+FREIRNVAKYAARLGQSFSSSKETL+V                  
Sbjct: 478  RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 537

Query: 1865 KYIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSM 1686
            KY+FSDGIGK+S  FA+KVA KCG+    PSAFQIRYGGYKGVVA DPTS  KLSLR SM
Sbjct: 538  KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 597

Query: 1685 FKYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPV 1506
             KY S+ T LDVL WSK QPCFLNRQLI+LLSTLG+ D IFEKKQ+E V QLD ILTDP+
Sbjct: 598  RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 657

Query: 1505 RAQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNG 1326
            +AQEAL++MSPGEN N+LKE+L+CGYKPDAEPFLSMMLQTFRASKL ELR ++RI+IPNG
Sbjct: 658  KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 717

Query: 1325 RSMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNP 1146
            RSMMGCLDETRTL YGQVFVQ SG G +Q+     + +   RS QR +IV+G V+VAKNP
Sbjct: 718  RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL-FSSSRSRQR-FIVQGLVVVAKNP 775

Query: 1145 CLHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPP 966
            CLHPGD+RVL+AVNVP LHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD+ELIPP
Sbjct: 776  CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 835

Query: 965  RQIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESG 786
            +Q  PMDYTPA S ++LDHDV IED++EYFTNY++NDSLG+IANAHT FAD+E   A S 
Sbjct: 836  QQDPPMDYTPAQS-MQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSE 894

Query: 785  ACMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKE 606
             C++LA  FS+AVDFPKTGVPA IPPHL+VKEYPDFMEK DKP+Y SQ VIGKLFR VK+
Sbjct: 895  PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 954

Query: 605  ITPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEA 426
            I P T+CI  FT  VA++SYD DME DGFED++DDA Y KG YD+KLGNLM+YYGIKTEA
Sbjct: 955  IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEA 1014

Query: 425  EXXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWY 246
            E           SF +++DAEA+G+AV++L+KEAR WF +K     +T  + YAKASAWY
Sbjct: 1015 EILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK--SGSDTEDDAYAKASAWY 1072

Query: 245  HVTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 66
            HVTYHP+YWG YN GM RDHFLSFPWCVYD+L+ IKK+ +       P L  QF+ GLR+
Sbjct: 1073 HVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA-FPALEQQFRQGLRM 1131


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1466 bits (3794), Expect = 0.0
 Identities = 739/1136 (65%), Positives = 864/1136 (76%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            M +TIQV GFPS VSA+ +KEFLE + G+ T+ AL ++  + +       A VQFT+   
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIK--QPRSGASMTHAKVQFTSFEL 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AE I +L  + + YG +YLK   ++ DI+ KPRA + S++   LHFGCQ+S E+FC LWK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
             +   V FG GLRK  F L H   EYKLE+SY++IW IQL+ PR    KFLLIQ+L AP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IYEK               YFK+  +DQWVR  DFT S  IGQS A+CLELPY  + P  
Sbjct: 179  IYEKDVPVLSY--------YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP-N 229

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
             RENF YYKE++G+F +ESGSS+SHNL LVPI+GPP+G  LP+++LFKIN LVQNGCL+G
Sbjct: 230  FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 289

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            PTLD  FF  V+P+  P ++IEHALE+LYHL ECCYEPV+WL EQY  Y +      +P 
Sbjct: 290  PTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKP-VAGSPA 348

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            ISL  GLVY+RRVQITP KVYFC PEV VSNRVLRNY   +DNF+RVSF+DE  EK+ ST
Sbjct: 349  ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
             +SPR SK  + + T +YRRILS L+NGIVIGDKKFD LAFSSSQLR++SAWMFAS+ GL
Sbjct: 409  VISPRMSK--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGL 466

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            TAA IR WMGDF +IRNVAKYAARLGQSFSSSKETL V              +    Y+F
Sbjct: 467  TAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVF 526

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS   A +VA KCG     PSAFQIRYGGYKGVVAVDPTS  KLSLRKSMFKY 
Sbjct: 527  SDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 586

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            SDNT LDVL WSK QP FLNRQLITLLSTLGV+DH+FEKKQ+  VDQLD IL DPV AQE
Sbjct: 587  SDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQE 646

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            AL++MSPGEN NVLKEML+CGYKPDAEPFLSMMLQTFRA+KL ELR ++RI++PNGRSMM
Sbjct: 647  ALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 706

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTLEYG+VFVQ SG G +Q   + L+ +RG  S+  N+I+EGK++VAKNPCLHP
Sbjct: 707  GCLDETRTLEYGEVFVQISGTGGRQSFGDSLM-FRGSGSHHDNFILEGKIVVAKNPCLHP 765

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+RVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD +LIPP+QI 
Sbjct: 766  GDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQIN 825

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDYTPA + V LDHDV IE+++EYFTNY++NDSLG+IANAHT FADKE   A    C E
Sbjct: 826  PMDYTPAPTKV-LDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTE 884

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LA+LFS+AVDFPKTGVPA IP +L VKEYPDFMEK DKP+Y SQ VIGKLFREVK+I P 
Sbjct: 885  LAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPH 944

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
               I SFT  VA++SYD DME  GFEDY+ DA+Y K +YD+KLGNLM+YYGIKTE+E   
Sbjct: 945  NCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILS 1004

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SFDR+KDAEA+GLAVKSL+KEAR WF+  GS++   A + YAKASAWYHVTY
Sbjct: 1005 GSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTY 1064

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 66
            HP+YWG YNEGM RDHFLSFPWCVYDKLIH K+     R L    L  +   GLRL
Sbjct: 1065 HPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 1457 bits (3772), Expect = 0.0
 Identities = 741/1136 (65%), Positives = 868/1136 (76%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQVS FPS+V AE VK FLE + GK+TVYAL++R  K  G   RA+AIVQFT +  
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTD 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AELI  L NQ L YG SYLK   +ENDIV KPR  + ++E   LHFGCQVS+EKF  LW+
Sbjct: 58   AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
             V   VNFG G+RK++FLL H  VEY+L++ Y++IW I+L RPRN   K+LLIQ+  AP+
Sbjct: 118  EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IYEK              +YF D  +DQWVR TDFT S CIGQSS +CLELPY  + P  
Sbjct: 178  IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP-N 236

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
             RENF YYKE EG+F +ESGSS+S NL+LVPIVGP  GI+LPYE+LFKINLLVQNGC+ G
Sbjct: 237  FRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPG 296

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            P LDA F+  VNP  I   YI+HALE+LY+L ECC+EP KWL EQY  Y  S   P +P 
Sbjct: 297  PALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPV 356

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            ISL DGLV +RRVQITPS+VYFC PE+ VSNRVLR++H+ +DNF+R++FVDEE EK+ ST
Sbjct: 357  ISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHST 416

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
            DL  R   TE      IY RILSTL+NGIVIGDK+F+ LAFSSSQLRE+SAWMFAS++GL
Sbjct: 417  DLLTRNRITE------IYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            TAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V              R G+ Y+F
Sbjct: 471  TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS  FA+KVA KC ++   PSAFQIR GG+KGVVAVDPTS  KLSLR SM KY 
Sbjct: 531  SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            S+NT LDVL WSK QPCFLNRQLITLLSTLGV DH FE+KQ+EVVDQL+ ILTDP++AQE
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            AL++MSPGEN N+LKEMLLCGY+PDAEPFLSMMLQTFRASKL ELR +SRI++ NGRSMM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTL+YGQVFVQ S                G RS QR +IV+GKV+VAKNPCLHP
Sbjct: 711  GCLDETRTLDYGQVFVQVS----------------GSRSEQR-FIVQGKVVVAKNPCLHP 753

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+RVL AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QI 
Sbjct: 754  GDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIP 813

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDY+PA +   L+H+VTIE+++EYFTNY++NDSLG+IANAHT FAD+E   A S  C  
Sbjct: 814  PMDYSPAPTK-PLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKW 872

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LA+LFS+AVDFPKTGVPA IP  L VKEYPDFMEK DKP+Y S  VIGKLFREVK++ P 
Sbjct: 873  LAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPN 932

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
               I S T    ++ YD DME DG+EDY+DDA+Y K  YD+KLGNLM YYGIKTEAE   
Sbjct: 933  ECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILS 992

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SF +++DAEA+G+AV+SL+KEAR+WF++KG+     A + YAKASAWYHVTY
Sbjct: 993  GGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTY 1052

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 66
            HP+YWG+YNEGM R+HFLSFPWCVYDKLI IKK  + RR      L   F  GLRL
Sbjct: 1053 HPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1442 bits (3733), Expect = 0.0
 Identities = 723/1138 (63%), Positives = 872/1138 (76%), Gaps = 2/1138 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQ+SGFPS VSAE+VKEFLE H G+ TVYA+++RP K  G   R++AIVQF T  +
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGG--SRSYAIVQFMTVET 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AELI  L N  L YG SYL    +E DIV KPRA++ SL+   LHFGCQ+S EKF  LW+
Sbjct: 59   AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 V+FG GLR++ F L +  VEY+L++ Y+++W I+L RPR    K+LLIQ+L AP+
Sbjct: 119  VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            +YEK              +YFKD  +DQWVRATDFT S CIG SSA+ LELPY  + P  
Sbjct: 179  VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP-D 237

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
            +RENF YYKE E +F +ESGSSFS NLDLVPIVGPP GI LP+E +FKIN+L+QNGCL+G
Sbjct: 238  LRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSG 297

Query: 2573 PTLDAPFFASVNPQFIPSA-YIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2397
            PTLD  F+  V+PQ I +   I +ALE+L++L EC YEP  WL+EQY KY  +   P  P
Sbjct: 298  PTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPP 357

Query: 2396 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2217
             I+L  GLVY+RRVQ+TPSKVYFC PE+ VSNRVLR Y + +D F+RVSFVDEE EKL S
Sbjct: 358  AIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFS 417

Query: 2216 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2037
            TDLSPRTS   + + T IYRRILS LRNGI IGD+KF+ LAFSSSQLR++S WMFA+ DG
Sbjct: 418  TDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDG 477

Query: 2036 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 1857
             +A  IR+W+GDFR IRNVAKYAARLGQSF SS ETLTV              R  VKY+
Sbjct: 478  HSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYV 537

Query: 1856 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1677
            FSDGIGKIS++FA++VAKKCG+   VPSAFQIRY GYKGVVAVDPTS TKLSLRKSM+KY
Sbjct: 538  FSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKY 597

Query: 1676 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1497
             S+   LDVL +SK Q C+LNRQLITLLSTLGV D +FEKKQ+E V QL+ IL DP+RA+
Sbjct: 598  ESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAR 657

Query: 1496 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1317
            EALD+MS GE  N+LKE+L CGY+P+AEPFLSMMLQ FRASKLQELR ++RI IP+GR+M
Sbjct: 658  EALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAM 717

Query: 1316 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1137
            MGCLDE RTLEYG+VFVQFSG   +   ++  +   G   + +NYIV G+V+VAKNPCLH
Sbjct: 718  MGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFML--GGTGSGQNYIVVGRVVVAKNPCLH 775

Query: 1136 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 957
            PGD+RVL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD+ELIP +Q 
Sbjct: 776  PGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQF 835

Query: 956  QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 777
            +PMDY+PA +  RLDHDV IE++QEYFTNY++NDSLG+IANAHTAFADKE   A S +C+
Sbjct: 836  EPMDYSPAPT-TRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCI 894

Query: 776  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 597
            ELARLFS+AVDFPKTGVPA IP  L+VKEYPDFMEKL+KP+Y SQ VIGKLFREVK+I P
Sbjct: 895  ELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAP 954

Query: 596  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 417
                +  FT  VA +SYD DME+DGFEDY+DDA+Y K  YD+KLGNL++YYGIK+EAE  
Sbjct: 955  NVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEII 1014

Query: 416  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVT 237
                     SF +++DAE++ +AV++L+KEAR WF++KGS     A + YAKASAWY+VT
Sbjct: 1015 GGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVT 1074

Query: 236  YHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNN-SKRRQLDEPPLNYQFKHGLRL 66
            YH +YWG YNEGM RDH+LSFPWCVYDKL+ IK++  S RR L    L   F   L L
Sbjct: 1075 YHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1436 bits (3718), Expect = 0.0
 Identities = 727/1138 (63%), Positives = 860/1138 (75%), Gaps = 2/1138 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            M +T++VSGFPSS +A AV+ FLE+H G  TV AL++R  +  G   R +AIVQFTT  +
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AE I SL N  L YG SYL    ++ DI+ +PR+ + ++E   LHFG Q S EKF  +W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
            G    VNFG G+RK+ F L H   EYKL + +++IW I+L RPR    K+LLIQ+  AP+
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IYE+              +YF+D  ++QWVR TDFT S  IG SS++CLELP   + P  
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP-N 237

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
              ENF YYKE+EG F +ESG +FS N DLVPIVGP  G+ LPY +LF++NLLVQNGCLAG
Sbjct: 238  FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
              LD  F+  V+P  +P   IE+ALE+LYHL ECCYEP KW +EQY KY  S + P +P 
Sbjct: 298  SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            +SL  GLVY+ +VQITP KV+FC PEV VSNRVLR Y   +DNF+RVSFVDEE EK+ ST
Sbjct: 358  LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
            D+SPRTS   + + TAIY RILSTL+NGIVIGDKKF+ LAFSSSQLRE+S WMFAS+ GL
Sbjct: 418  DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            TAA IR WMG F +IRNVA+YAARLGQSF SS ETL+V              R G +Y+F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS  FA+KVA KCG   F PSAFQIRY GYKGVVAVDPTS  KLSLR+SMFKY 
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            S+NT LDVL  SK QPCFLNRQLITLLSTLGV DH FE+KQ+E VDQLD +LTDP+RAQE
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            AL++MSPGEN N+LKEMLLCGY+PDAEPFLSMMLQTFRASKL ELR ++RI+IPNGRSMM
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTLE+GQVFV+FSG   + + D+       +R   + Y+++G V+VAKNPCLHP
Sbjct: 718  GCLDETRTLEHGQVFVKFSGSRFRNLYDSS--DMFSERGRGQCYLIKGSVVVAKNPCLHP 775

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GDLR+L+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QI 
Sbjct: 776  GDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQIS 835

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDYTP    ++LDHDVTIE+++EYFTNY++NDSLGVIANAHTA ADKES  A S  C+E
Sbjct: 836  PMDYTP-EPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LAR FS+AVDFPKTGVPA IP +L  +EYPDFMEK DKPSY S+ VIGKLFREVK+I P+
Sbjct: 895  LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
            T+ I SFT  VA++ YD DME DGFEDY+DDA+Y K  YD+KLGNLM YYGIKTEAE   
Sbjct: 955  TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SF +K+DAEA+G+AV+SLKKEAR+WF++KGS     A +  AKASAWYHVTY
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSK--RRQLDEPPLNYQFKHGLRL 66
            H NYWG YNEGM RDHFLSFPWCVYDKLI IK+ NS   RR L  P +  QF  GL L
Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1436 bits (3717), Expect = 0.0
 Identities = 723/1137 (63%), Positives = 864/1137 (75%), Gaps = 1/1137 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GF S VSA  VK FLE + G++TVYAL++R  K  G   RAFAIVQFT ++ 
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            A LI  L NQ L YG SYLK   +E DIV KPR  + ++E   ++FGCQVS EKF  LWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 +NFG G+RK+EFLL +C  +YKLE+ Y++IW I+LR P +   K LLIQ+  AP+
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IYEK              +YFKD  +DQWVR TDFT S CIGQSS + LELP++ + P  
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP-N 236

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
             RENF YYKE+EG+  +ESGSS+S NL LVPIV P R I+LP+E+LFK+NLLVQNGC+ G
Sbjct: 237  FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            P LD  F+  V+P  +   YI+HALE+LY+L ECCYEP +WL E+Y  + +S  +  +P 
Sbjct: 297  PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            ISL +GLVY+RRVQITPS+VYFC PE+ VSNRVLR +HN +DNF+R+SFVDEE EK+ ST
Sbjct: 357  ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
            ++  R       + T IY+RILSTLRNGIVIG+K+F+ LAFSSSQLRE+SAWMFAS+ GL
Sbjct: 417  NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            TAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V              + G+KY+F
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS  FA+KVA KC +    PSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY 
Sbjct: 531  SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            S+NT LDVL WSK QPCFLNRQLITLLSTLGV D  FEKKQ+EVVDQL+ +LTDP+ AQE
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            AL++MSPGEN N+LKEMLLCGYKPDAEPFLSMML+TFRASKL ELR ++RI++  GRSMM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTL YGQVFVQFSG                   ++R +IV+GKVIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFSG-----------------SRSERRFIVQGKVIVAKNPCLHP 753

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+RVL+AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFV WD ELIP +QI 
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDY+PA S  +LDH+VTIE+I+EYFTNY++NDSLG+I+NAHTAFAD+E   A S  C+E
Sbjct: 814  PMDYSPA-STTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLE 872

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LA+LFS+AVDFPKTGVPA IP  L VKEYPDFMEK DKPSY S  VIGKLFREVK + P 
Sbjct: 873  LAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPN 932

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
               I   T    ++ YD DME +GFEDY+DDA++ K KYD+KLGNLM+YYG+KTEAE   
Sbjct: 933  ECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILG 992

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SF +K+DAEA+ +AV+SL+KEAR+WF++KGS+  E   + YAKASAWY+VTY
Sbjct: 993  GGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTY 1052

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSK-RRQLDEPPLNYQFKHGLRL 66
            HP+YWG YNEGM RDHFLSFPWCVYDKLI IKK  +  R  LD   L ++F+ GL L
Sbjct: 1053 HPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1429 bits (3699), Expect = 0.0
 Identities = 718/1137 (63%), Positives = 862/1137 (75%), Gaps = 1/1137 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GF S VSA  VK FLE + G++TVYAL++R  K  G   RAFAIVQFT ++ 
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            A LI  L NQ L YG SYLK   +E DIV KPR  + ++E   ++F C VS EKF  LWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 +NFG G+RK+EFLL +C  +YKLE+ Y++IW I+LR P +   K LLIQ+  AP+
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IYEK              +YFKD  +DQWVR TDFT S CIGQSS +CLELP++ + P  
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP-N 236

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
             RENF YYKE+EG+  +ESGSS+S NL LVPIV P R I+LP+E+LFK+NLLVQNGC+ G
Sbjct: 237  FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            P LD  F+  V+P  +   YI+HALE+LY+L ECCYEP +WL E+Y  + +S  +  +P 
Sbjct: 297  PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            ISL +GLVY+RRVQITPS+VYFC PE+ VSNRVLR +HN +DNF+R+SFVDEE EK+ ST
Sbjct: 357  ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
            ++  R       + T IY+RILSTLRNGIVIG+K+F+ LAFSSSQLRE+SAWMFAS+ GL
Sbjct: 417  NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            TAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V              + G+KY+F
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
             DGIGKIS  FA+KVA KC +    PSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY 
Sbjct: 531  PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            S+NT LDVL WSK QPCFLNRQLITLLSTLGV D+ FEKKQ+EVVDQL+ +LTDP+ AQE
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            AL++MSPGEN N+LKEMLLCGYKPDAEPFLSMML+TFRASKL ELR ++RI++  GRSMM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTL YGQVFVQFSG                   ++R +IV+GKVIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFSG-----------------SRSERRFIVQGKVIVAKNPCLHP 753

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+RVL+AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFV WD ELIP +QI 
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDY+PA S  +LDH+VTIE+I+EYFTNY++NDSLG+I+NAHTAFAD+E G A S  C+E
Sbjct: 814  PMDYSPA-STTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLE 872

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LA+LFS+AVDFPKTGVPA IP  L VKE+PDFMEK DKPSY S  VIGKLFREVK + P 
Sbjct: 873  LAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPN 932

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
               I   T    K+ YD DME +GF DY+DDA++ K KYD+KLGNLM+YYG+KTEAE   
Sbjct: 933  ECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILS 992

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SF +K+DAE++ +AV+SL+KEAR+WF++KGS+  E   + YAKASAWY+VTY
Sbjct: 993  GGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTY 1052

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQ-LDEPPLNYQFKHGLRL 66
            H +YWG YNEGM RDHFLSFPWCVYDKLI IKK  +  R+ LD   L ++F+ G  L
Sbjct: 1053 HHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1418 bits (3670), Expect = 0.0
 Identities = 724/1121 (64%), Positives = 854/1121 (76%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV G PS+VSA  +KEFLE + G+ T+ AL ++  K  GV     A VQFT+   
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPK-SGVSM-THAKVQFTSLRL 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AELI SL  Q L YG +YLK   ++ DI+ KPR  + S++   LHFG Q+S+E+FC LWK
Sbjct: 59   AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
             +   V FGFGLRK  F L H   EYKLE+S ++IW IQLR PR    KFLLIQ+L AP+
Sbjct: 118  AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IYEK               YFK+  +DQWVR  DFT S  IGQSSA+CLELP+  + P  
Sbjct: 178  IYEKD---------VSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP-N 227

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
              ENF  YKE++ +F +ESG+SFS NL LVPIVGPP+G  LP+++LFKIN LVQNGCL+G
Sbjct: 228  FCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSG 287

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            PTLD  FF  V+PQ I  ++IEHALE+LY+L ECCYEPV+WL EQY  Y  S     +P 
Sbjct: 288  PTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPA 346

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            ISL  GLVY+RRVQITP KVYFC PEV VSNRVLRNY   +DNF+RVSF+DE  EK+ ST
Sbjct: 347  ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHST 406

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
             +SPR S   + + T +YRRILS L+NGIVIGDKKFD LA SSSQLR++SAWMFAS+ GL
Sbjct: 407  VISPRMSN--EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGL 464

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            TAA IR  MGDF +IRNVAKYAARLGQSFSSSKETL V              R G  Y+F
Sbjct: 465  TAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVF 524

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS   A +VA KCG  +  PSAFQIRYGGYKGVVAVDPTS  KLSLRKSMFKY 
Sbjct: 525  SDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 584

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            S+NT LDVL+WSK +PCFLNRQLITLLSTLGV+DH+FEKKQ+E VDQLD IL DP+RAQE
Sbjct: 585  SENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQE 644

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            AL++MSPGEN N+LKEML+CGYKPDAEPFLSMMLQTFRA+KL ELR ++RI++PNGRSMM
Sbjct: 645  ALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 704

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTLEYG+VFVQ SG G +Q   + L+ Y G  S+  N+I+EGKV+VAKNPCLHP
Sbjct: 705  GCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFY-GSGSHHDNFILEGKVVVAKNPCLHP 763

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+R+L AV+VP LHHMVDCVVFPQKG+RPHP+ECSGSDLDGD+YFV WD++LIPPRQI 
Sbjct: 764  GDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQIN 823

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDYTPA + V LDHDV IE+++EYFTNY+ ND LG+IANAHT FADKE   A    C E
Sbjct: 824  PMDYTPAPTKV-LDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKE 882

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LA+LFS+A++FPKTGVPA IP HLHVKEYPDFMEK +KP+Y SQ VIGKLFREVK++ P 
Sbjct: 883  LAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPH 942

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
               + SFT  VA +SYD+DME DGFEDY+ DA+Y K +YDFKLG+LM+  GI+TE+E   
Sbjct: 943  NYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILS 1002

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SFD++KDAEA+ LAV+SL+KEAR WF+  GS +   A + YA ASAWYHVTY
Sbjct: 1003 GSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTY 1062

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQL 111
            HP YWG YNEGM  DHFLSFPWCVYDKLI IK++    R L
Sbjct: 1063 HPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSL 1103


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score = 1367 bits (3538), Expect = 0.0
 Identities = 694/1136 (61%), Positives = 834/1136 (73%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MGRTIQV GFP  V+AE VK+FLEN+ G+ TV AL V+  KV    +RA+A VQFT    
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVG---RRAYARVQFTNIRC 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AE I  L    L YG SYLK Y  + DIV  PR     +E   L+FGCQ+S  KF  LWK
Sbjct: 58   AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
            G    V FG G++K+ F L H  VEYK+++SY++IW I L        K L+IQ+  AP+
Sbjct: 118  GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPR 177

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IY+K               YF    +DQWVR TDFT S  IGQSS++CL+LPY    P  
Sbjct: 178  IYKK--------LSGSVYSYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRLP-N 227

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
             R+NF YYKE E  F +E+G  FSHN DLVPIV PP  I+LPY +LFK+  LVQ GCL G
Sbjct: 228  FRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPG 287

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            P LD  FF  VNP      YIEHALE+LY+L ECCY P  WL EQY +YR S   P +P 
Sbjct: 288  PKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPA 347

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            I L DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y + +DNF+RVSFVDEE +K+ ST
Sbjct: 348  ICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYST 407

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
            DLSPR +  ++ K T +Y R++S LR+G+ IGD+KFD LAFSSSQLR++S WMFA  DGL
Sbjct: 408  DLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGL 467

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
             A  IREWMGDF  IRNVAKYAARLGQSF SS ETL+V              ++G +Y F
Sbjct: 468  NADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSV---SKREIEEIQDVKNGTEYTF 524

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS  FA++VA KCG+    PSAFQIRYGGYKGVVAVDP+S  KLSLR SM KY 
Sbjct: 525  SDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQ 584

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            SDNT LDVL WSK QPCFLNRQ+ITLLSTLGV+DH+FEK+Q+E V QLD +L DP+RAQE
Sbjct: 585  SDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQE 644

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            ALD+MSPGEN ++LKEML CGY+PD EPFLSMMLQTFRASKL +LR ++R++IP  R MM
Sbjct: 645  ALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMM 704

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDET  L+YGQVFV++SG   + + D+   +Y    +N+R   V GKV+VAKNPCLHP
Sbjct: 705  GCLDETGILKYGQVFVRYSGAVKRGLFDD---SYDNSTANERFDPVRGKVVVAKNPCLHP 761

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+RVL AV+VP+L HMVDCVVFP+ G RPHPNECSGSDLDGD+YFV WD++LIP +Q++
Sbjct: 762  GDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQVE 821

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDY PA +  RLDHDVTIE++++YFTNY++NDSLG+IANAHT FADKE  MA S  C+E
Sbjct: 822  PMDYNPAPT-TRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPCLE 880

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LARLFS+AVDF KTG+PA IPPHL VKEYPDFMEK DK +Y S RVIGKLFREVK+I PQ
Sbjct: 881  LARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQ 940

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
            T+   SFT  VA++SYD DME DGFED++D+A+  K +YD+KLGNLM YYG+KTEAE   
Sbjct: 941  TSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEVLS 1000

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    +FDR+KDAEA+G AV+SL+ EAR+WF     K G  A + YAKASAWY+VTY
Sbjct: 1001 GGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF-----KKGTEADDVYAKASAWYYVTY 1055

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 66
            HP+Y+G YNEGMKRDH+LSFPWCVYDKL+ IKK+NS RR      L  QF   +R+
Sbjct: 1056 HPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNS-RRASQMASLRRQFNDRVRI 1110


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score = 1362 bits (3524), Expect = 0.0
 Identities = 706/1123 (62%), Positives = 844/1123 (75%), Gaps = 3/1123 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TI +SGFPS V+A+AVK FLE H G  TVYA++VRP K  G   R +AIVQFT+A  
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTSATQ 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AELI SL NQ L YG SYLK    E DIV KPR  M +LE   L FGCQVS+EKF  LW+
Sbjct: 59   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
            G   +V FG G+RK+ F L +  VEY+LE+SY+ IW IQL  PR+   K+LLIQ+  AP+
Sbjct: 119  GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IY+K              ++FK+  +DQWVR TDFT+S  IGQSS++CL+LP   + PP 
Sbjct: 179  IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP- 237

Query: 2753 IRENFPYYKEDEGQF-CVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2577
             ++NF YY+E E +F  ++  ++FS   DL PIV   R   LPY++LFKIN LVQ GC+ 
Sbjct: 238  FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS-RSHVLPYKILFKINALVQYGCIP 296

Query: 2576 GPTLDAPFFASVNPQFIPSA-YIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNA 2400
             P LDA F+  V         ++EHALE+L+HL EC Y+P  +L EQY KY  S H PN+
Sbjct: 297  WPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNS 354

Query: 2399 PGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLR 2220
            P ISL DGLVY+RRVQITP KV+FC PEV VSNRVLR++   +DNF+RVSFVDEE +K+R
Sbjct: 355  PVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMR 414

Query: 2219 STDLSPR-TSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASK 2043
            STDL PR +SK+ED K T IYRRILS L+NGIVIGDK F  LAFSSSQLR++S WMFAS 
Sbjct: 415  STDLLPRMSSKSEDGK-TDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASG 473

Query: 2042 DGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVK 1863
              + AA IR WMGDFR I+N AKYAARLGQSF SS E L+V              +  +K
Sbjct: 474  PDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIK 533

Query: 1862 YIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMF 1683
            Y+FSDGIGKIS+ FA++VA KCG    VPSAFQIRYGGYKGVVAVDP S  KLSLRKSM 
Sbjct: 534  YVFSDGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMC 592

Query: 1682 KYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVR 1503
            K+ SDNT LDVL  SK QPCFLNRQLITL+STLGVRD IFEKKQ E V+QLD ILTDP++
Sbjct: 593  KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 652

Query: 1502 AQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGR 1323
            AQEAL++MSPGEN N+LKEML CGY+PD EP+LSMMLQTFRASKL ELR +SRI+IPNGR
Sbjct: 653  AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 712

Query: 1322 SMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPC 1143
            +MMGCLDETRTLEYGQVFVQ S    + +S++      G+   + + ++EG V VAKNPC
Sbjct: 713  AMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGR---EHHLVIEGNVTVAKNPC 769

Query: 1142 LHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPR 963
            LHPGD+RVL+AVN+P L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP R
Sbjct: 770  LHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSR 829

Query: 962  QIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGA 783
            QI PMDYTPA     LD DVT EDIQEYF NYM+NDSLG+IANAHTAFADKE   A S  
Sbjct: 830  QIPPMDYTPAPPN-ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSP 888

Query: 782  CMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEI 603
            C+ELA+LFSVAVDFPKTGVPA IP HL+VKE+PDFMEK D+PSY S +VIGKLFR VK+I
Sbjct: 889  CLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDI 948

Query: 602  TPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAE 423
             P  + I SFT  VA++ YD DME +GFEDY++DA+Y K  YD+KLGNL++YYGIK+EAE
Sbjct: 949  APTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1008

Query: 422  XXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYH 243
                       SF R++DAEA+ LAV+SL+KEAR WF+ +   +   + + +AKASAWY+
Sbjct: 1009 VLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAR-EGADSNSDDLFAKASAWYY 1067

Query: 242  VTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQ 114
            VTYH +YWG YNEGMKRDH+LSFPWCVYDKL+ IK+NN +RR+
Sbjct: 1068 VTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRE 1110


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1360 bits (3520), Expect = 0.0
 Identities = 698/1142 (61%), Positives = 849/1142 (74%), Gaps = 6/1142 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TI++ GFP+SV+   VK F+E + G+ TV+A+++R    KG   RAFAI+QFTTA S
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLR--HGKGRVPRAFAIIQFTTANS 58

Query: 3293 AELISSLIN---QNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCG 3123
            A  + S  N   + LRYG SYLK   +E DIV +PR  + SL+   L FGCQ+S  +F  
Sbjct: 59   ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118

Query: 3122 LWKGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLA 2943
            LWK    +VNFG G+RK+ FL  H  V+YKLE+SY++IW I+L RPRN   ++LLIQ+L 
Sbjct: 119  LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178

Query: 2942 APKIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEF 2763
            AP+++E               ++FKD  ++QW+RA DFT    IGQSSAICLELP   + 
Sbjct: 179  APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238

Query: 2762 PPQIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGC 2583
            P   RENF YY+E E Q+ +++G  FS N  LVPIV PP G+++ Y++LFK+N LVQ+ C
Sbjct: 239  P-NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHAC 297

Query: 2582 LAGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPN 2403
            LAGP LD  F+  V+P+ +P  +IE+ALE++Y+  E CYEP KWL +QY  Y +S + P 
Sbjct: 298  LAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR 357

Query: 2402 APGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKL 2223
            +P ISL  GLVY+RRVQITP KVYFC PE+ VSNRVLR++   +DNF+RVSFVDEE +KL
Sbjct: 358  SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKL 417

Query: 2222 RSTDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFA-S 2046
             STDLS R+      K T IY RILS L+NGIV+GDKKF+ LAFSSSQLRE+S WMFA +
Sbjct: 418  FSTDLSSRSQN----KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPT 473

Query: 2045 KDGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXR-SG 1869
            + G TAA IR+WMG+F +IRNVAKYAARLGQSF SS ETL+V                 G
Sbjct: 474  ETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDG 533

Query: 1868 VKYIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKS 1689
             +Y+FSDGIGKIS  FAQKVAKKCG D   PSAFQIRYGGYKGVVAVDP S  KLSLRKS
Sbjct: 534  NEYVFSDGIGKISLEFAQKVAKKCGYD-CTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKS 592

Query: 1688 MFKYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDP 1509
            M KY SDNT LDVL  SK QPC+LNRQLI+LLSTLG++D +FEKKQ+E V+QL+ ILTD 
Sbjct: 593  MRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDS 652

Query: 1508 VRAQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPN 1329
            ++AQE LD+MS GE  NVLKEML+CGYKP+ EPFLSMMLQTFRASKL ELR +SRI+IP 
Sbjct: 653  LKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPK 712

Query: 1328 GRSMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKN 1149
            GR+MMGCLDETRTLEYGQVFVQFS    + +SD+            +NY+V+GKV+VAKN
Sbjct: 713  GRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFF-----SYDLPKNYMVKGKVVVAKN 767

Query: 1148 PCLHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIP 969
            PCLHPGD+RVLQAV+VPDL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD+ELIP
Sbjct: 768  PCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIP 827

Query: 968  PRQIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAES 789
             R I PMDYT A + V LDHDV IE+++EYF NY++NDSLG+IANAHT FADKE   A S
Sbjct: 828  SRPIDPMDYT-APATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMS 886

Query: 788  GACMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVK 609
              C++LARLFS AVDFPKTGVPA IPP LHVKEYPDFMEK DKP+Y S  VIGKLFREVK
Sbjct: 887  DQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVK 946

Query: 608  EITPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTE 429
            EI+     I SFT  VA+ SYD +ME DGF DY+DDA+Y K  YD+KLGNLM+YYGIKTE
Sbjct: 947  EISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTE 1006

Query: 428  AEXXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGET-AGEKYAKASA 252
            AE           SF++++DAEA+ +AV+SL+KEAR WF++  S   ++ + + YAKASA
Sbjct: 1007 AEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASA 1066

Query: 251  WYHVTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGL 72
            WYHVTYHP+YWG YNEGM RDH+LSF WCVY  L+ IKK   ++  +    L Y F  GL
Sbjct: 1067 WYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKK---EKLSIRRSSLEYSFS-GL 1122

Query: 71   RL 66
            RL
Sbjct: 1123 RL 1124


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1355 bits (3507), Expect = 0.0
 Identities = 693/1135 (61%), Positives = 842/1135 (74%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQ+ GFPS  +AE +KEFLE H G+ +V+AL++RP K  G   R +AI+QF + + 
Sbjct: 1    MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGG---RFYAIIQFQSISQ 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AE I SL N  L YG SYL      +DIV KPR  + SL    LH GCQV+ +KF  LW 
Sbjct: 58   AEKIISLANARLWYGRSYLNA-RPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 V+FGFG+R ++F L++    Y+L++SY++IW I+L   R    K+L+IQ+   P+
Sbjct: 117  TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPR 176

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IY++ +            +YF+D   D WVR TDFT   CIGQSS++CL L    E P  
Sbjct: 177  IYQQ-EVCSSGGNGYEDMNYFRDP--DDWVRTTDFTPGSCIGQSSSLCLVLTSDGELP-D 232

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2574
              ENF YYK+ +GQF +E+GS+FS N DLVPIVG P GI+LPY++LFKINLLVQ GCL+G
Sbjct: 233  FEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSG 292

Query: 2573 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2394
            PTLD  F+  V+P+ I    IE AL++L +L E CYEP  WL+E+Y KY  S   P    
Sbjct: 293  PTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPAL 352

Query: 2393 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2214
            ISL  GLVY+RRVQITPSKVYF  PEV VSNR+LR Y + +DNF+RVSFVDEE EKL ST
Sbjct: 353  ISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYST 412

Query: 2213 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2034
            DLSPRTS     + T IY R+LS LR+GIV+G KKF+ LAFSSSQLRE+S WMFA  D  
Sbjct: 413  DLSPRTST----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDED 468

Query: 2033 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 1854
            +A  IR  MGDFR+IRNVAKYAARLGQSF SS ETL+V                G+KY+F
Sbjct: 469  SADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVF 528

Query: 1853 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1674
            SDGIGKIS  FA++VAKKCG   F PSAFQIRYGGYKGVVAVDPTS  KLSLRKSM KY 
Sbjct: 529  SDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYE 588

Query: 1673 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1494
            S+NT LDVL  SK QPCFLNRQLITLLSTL V+DH+F KKQ+  V QL+ ILTDP++A+E
Sbjct: 589  SENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEE 648

Query: 1493 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1314
            ALD+MS GE+ NVLKE+L+CGYKP+ EPFLSMMLQTFRASKL ELR ++RI+IP+GR+MM
Sbjct: 649  ALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMM 708

Query: 1313 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1134
            GCLDETRTLEYGQVFVQFSG   +Q+ D++ +      S    +I+EGKV+VAKNPCLHP
Sbjct: 709  GCLDETRTLEYGQVFVQFSGKRRRQLFDDICI----HSSLDSCFIIEGKVVVAKNPCLHP 764

Query: 1133 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 954
            GD+RVL+AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIPP+QIQ
Sbjct: 765  GDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQ 824

Query: 953  PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 774
            PMDYTPA   + +D DVTIE+++EYF NY++NDSLG+IANAHT FAD +   A S  C++
Sbjct: 825  PMDYTPAPP-IEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQ 883

Query: 773  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 594
            LA+LFS+AVDFPKTGVPA IPP L+ KEYPDFMEK DK +Y S  VIG+LFREVK+I P 
Sbjct: 884  LAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPH 943

Query: 593  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 414
             + I SFT  VA K YD DME DGFEDYL+DA+Y KG YD+KLGN+++YYGIKTEAE   
Sbjct: 944  DSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILS 1003

Query: 413  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 234
                    SF +++DA+A+ +AVKSL+KEAR WF++K +       + YAKASAWYHVTY
Sbjct: 1004 GSIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTY 1063

Query: 233  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLR 69
            HPNY+G+YNEGM R HF+SFPWCV+DKL HIKK    + +L    L  + ++GLR
Sbjct: 1064 HPNYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLIS-SLENRLRYGLR 1117


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 1347 bits (3485), Expect = 0.0
 Identities = 684/1125 (60%), Positives = 830/1125 (73%), Gaps = 2/1125 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP  V+ + VK FLE   G  TVYA++VR  K  G   R FAIVQFT+   
Sbjct: 1    MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGG--PRVFAIVQFTSERH 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            A LI ++  + L YG SYLK + +E DIV KPRAS+ S+    ++FGCQVS +K   LW 
Sbjct: 59   ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 V+FG G+RK+ F +     +Y+LE+SY++IW I L  P+    KFL+IQV+ APK
Sbjct: 119  AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPK 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            I+EK              D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P  
Sbjct: 179  IFEKEDQPVNFLFGMM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP-D 235

Query: 2753 IRENFPYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCL 2580
             RENF  Y E     F ++SGSS+S N + LVP+V PP G +LP+E+LFK+N LVQN CL
Sbjct: 236  FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295

Query: 2579 AGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNA 2400
             GP LD  F+  +NP+    A I+H+LE+L+HL ECCYEP +WL E+Y K   S   P +
Sbjct: 296  PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLS 355

Query: 2399 PGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLR 2220
            P ISL DGLVYI RV +TP++VYF  PEV VSNRVLR+Y   ++NF+R+SFVDE+ EK+ 
Sbjct: 356  PTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIH 415

Query: 2219 STDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKD 2040
            S DLSPR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA +D
Sbjct: 416  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRD 472

Query: 2039 GLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKY 1860
             LTAA IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                  +Y
Sbjct: 473  RLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRY 532

Query: 1859 IFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFK 1680
            +FSDGIGKIS  FA+KVAKKCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K
Sbjct: 533  VFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 592

Query: 1679 YTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRA 1500
            + S NT LDVL WSK QPC+LNRQ+ITLLSTLGV+D++FEKKQ+EVVD+LD ILTDP+ A
Sbjct: 593  FESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEA 652

Query: 1499 QEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRS 1320
             EAL +M+PGEN N+LK++LLCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+IP GRS
Sbjct: 653  HEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRS 712

Query: 1319 MMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCL 1140
            MMGCLDETRTLEYGQV VQ+S             T  GKR     YI+ G V+VAKNPCL
Sbjct: 713  MMGCLDETRTLEYGQVVVQYSN-----------PTMPGKR-----YIITGPVVVAKNPCL 756

Query: 1139 HPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQ 960
            HPGD+RVLQAVNVP L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF+ WD+ELIPPR 
Sbjct: 757  HPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRT 816

Query: 959  IQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGAC 780
             +PMDYTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C
Sbjct: 817  SEPMDYTPEPAQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPC 875

Query: 779  MELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEIT 600
            +ELAR FS+AVDFPKTG+ A IP HL+VKEYPDFM+K DKP+Y S+ VIGKLFREVKE  
Sbjct: 876  IELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERA 935

Query: 599  PQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEX 420
            P    I SFT  VA KSYD DME +GFE+Y+D+A++ KG YD++LGNLM+YYGIKTEAE 
Sbjct: 936  PPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEI 995

Query: 419  XXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHV 240
                      SF +++DAE++G AV++L+KEA +WF++   K+     ++ AKASAWYHV
Sbjct: 996  LSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKND---FDESAKASAWYHV 1052

Query: 239  TYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 105
            TYH +YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ  E
Sbjct: 1053 TYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQE 1097


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1337 bits (3461), Expect = 0.0
 Identities = 683/1121 (60%), Positives = 831/1121 (74%), Gaps = 2/1121 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP  +SAEAVK+FLENH G  TVYAL V+  K     +RAFA VQF    S
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGG---RRAFAKVQFANNKS 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AE I  L ++ L YG SYLK + ++ DIV +PR  +  ++   L+FGCQ+S +KF  L  
Sbjct: 58   AEFIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS 116

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 + FG GL+K+ F L H   +YKL++SY++IW + L RP     +FLL+Q+  AP+
Sbjct: 117  K-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPR 175

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IY++ +             +FK+  +DQWVR TDFT S+ IG SS++CLE     + P  
Sbjct: 176  IYKRLEDSCY--------SFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLP-N 225

Query: 2753 IRENFPYYKEDEGQFCVESGS--SFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCL 2580
              E+F YYKE   QF +++G   SFS  L LVPIV  P GIELPY++LFKI+ L+Q+GC 
Sbjct: 226  FSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCF 285

Query: 2579 AGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNA 2400
             G  L+  FF  V+P+    A IEHALE+LY+L ECCY+PV+WL EQY +Y +    P +
Sbjct: 286  PGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKS 345

Query: 2399 PGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLR 2220
            P I+L DGLVY+RRV +TP KVYFC PEV VSNRVLRNY   ++NF+RVSFVDEE EK+ 
Sbjct: 346  PPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIH 405

Query: 2219 STDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKD 2040
            STDL PR S T +   T IY RILSTLRNG +IGDK+F+ LAFSSSQLR++S WMFAS+ 
Sbjct: 406  STDLLPRAS-TGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRP 464

Query: 2039 GLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKY 1860
            GLTA  IR WMGDFR+IRNVAKYAARLGQSF SS+ETL+V                G  Y
Sbjct: 465  GLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNY 524

Query: 1859 IFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFK 1680
            IFSDGIGKIS  FA +V  KCG+  + PS+FQIRYGGYKGVVAVDP S  KLSLRKSM K
Sbjct: 525  IFSDGIGKISADFAHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLK 583

Query: 1679 YTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRA 1500
            Y S+N  LDVL WSK QPC+LNRQL+TLLSTLGV D + E+KQ E VDQLD IL D ++A
Sbjct: 584  YESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKA 643

Query: 1499 QEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRS 1320
            QEAL++MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKL +LR R+RI+IPNGR+
Sbjct: 644  QEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRT 703

Query: 1319 MMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCL 1140
            MMGCLDE+RTLEYGQVFVQFSG G +Q  +     +    S   ++I++G V+VAKNPCL
Sbjct: 704  MMGCLDESRTLEYGQVFVQFSGAGRRQFFEES-HPFNDSGSANCDFILKGNVVVAKNPCL 762

Query: 1139 HPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQ 960
            HPGD+RVL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD +LIPPRQ
Sbjct: 763  HPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQ 822

Query: 959  IQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGAC 780
            +Q MDYTPA +  +LDHDVTIE+++EYFTNY++NDSLG+IANAH  FAD+E  MA S  C
Sbjct: 823  VQSMDYTPAPT-TQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPC 881

Query: 779  MELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEIT 600
             +LA+LFS+AVDFPKTGVPA IP  L  KEYPDFMEK DKP+YPS++VIGKLF++VK  T
Sbjct: 882  KQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKT 941

Query: 599  PQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEX 420
            PQ + I +FT  VA+KSYDSDM  DGFEDY+D+A+Y K +YD KLGNLM+YYGIKTEAE 
Sbjct: 942  PQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEI 1001

Query: 419  XXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHV 240
                      +FDR+KDAEA+G+AV+ L+KEAR WF     K      +  AKASAWYHV
Sbjct: 1002 LSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWF-----KRRSDIDDMLAKASAWYHV 1056

Query: 239  TYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRR 117
            TYH  YWG+YNEG+KRDHF+SFPWCVYD+LI IKK  +++R
Sbjct: 1057 TYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKR 1097


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 1334 bits (3452), Expect = 0.0
 Identities = 682/1125 (60%), Positives = 819/1125 (72%), Gaps = 2/1125 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP+ VSAE VK+FLE   G  TVYA++VR  K  G   R +AIVQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
              LI +   + L YG SYLK + VE DIV KPRAS+ ++    + FGCQVS++KF  LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ APK
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            I+EK              D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P  
Sbjct: 179  IFEKEDQPINLLFGIM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-D 235

Query: 2753 IRENFPYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCL 2580
             RENF  Y E     F +ESGSS+S N + LVP+V PP G  LP+E+LFK+N LVQN CL
Sbjct: 236  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 295

Query: 2579 AGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNA 2400
            +GP LD  F+  +N +    A I+H LE+L+HL ECCYEP  WL ++Y K+      P +
Sbjct: 296  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 355

Query: 2399 PGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLR 2220
            P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+R
Sbjct: 356  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 415

Query: 2219 STDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKD 2040
            S DLSPR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  D
Sbjct: 416  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 472

Query: 2039 GLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKY 1860
             +TAA IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +Y
Sbjct: 473  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 532

Query: 1859 IFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFK 1680
            +FSDGIGKIS  FA+KVA+KCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K
Sbjct: 533  VFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 592

Query: 1679 YTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRA 1500
            + S+NT LDVL WSK QPC++NRQLITLLSTLGV D +FEKKQ+EVVD+LD ILT P+ A
Sbjct: 593  FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEA 652

Query: 1499 QEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRS 1320
             EAL +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GRS
Sbjct: 653  HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 712

Query: 1319 MMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCL 1140
            MMGCLDETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPCL
Sbjct: 713  MMGCLDETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPCL 756

Query: 1139 HPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQ 960
            HPGD+RVLQAVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD EL+PPR 
Sbjct: 757  HPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRT 816

Query: 959  IQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGAC 780
             +PMDYTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C
Sbjct: 817  SEPMDYTPEPTQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPC 875

Query: 779  MELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEIT 600
            +ELA+ FS AVDFPKTGV A IP HL+VKEYPDFMEK DKP+Y S+ VIGKLFREVKE  
Sbjct: 876  IELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERA 935

Query: 599  PQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEX 420
            P    I SFT  VA KSYD DME DGFE+Y+D+A+Y K  YDFKLGNLM+YYGIKTEAE 
Sbjct: 936  PPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEI 995

Query: 419  XXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHV 240
                      SF +++DAE++G AV++L+KE  + F+    +  E+     AKASAWYHV
Sbjct: 996  LSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES-----AKASAWYHV 1050

Query: 239  TYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 105
            TYH +YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ  E
Sbjct: 1051 TYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQE 1095


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 685/1125 (60%), Positives = 826/1125 (73%), Gaps = 8/1125 (0%)
 Frame = -3

Query: 3470 GRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAASA 3291
            GRT+QVSGFP    AEAVK+FLE+  G  TVY L++R  K K    R FAIVQFTT+ SA
Sbjct: 75   GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKP-NSRVFAIVQFTTSKSA 133

Query: 3290 ELISSLINQ--NLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLW 3117
            E+I SL  Q  +L +G SY+ V  +ENDIV  PR +   LE   L+FG Q+S E F  LW
Sbjct: 134  EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193

Query: 3116 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 2937
                  V FGFGL+K+ F L H GV+YKL++ Y++IW IQLRRP     ++L++Q+  AP
Sbjct: 194  SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253

Query: 2936 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2757
            +I++KP             +Y+KD  ++QWVR+ DFT S  IGQSS++CL LP     P 
Sbjct: 254  RIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIP- 312

Query: 2756 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2577
             IRENF YYKE  G F +++GSSFSH+L LVPIV PP  I+LPY++LF++N LVQNG L 
Sbjct: 313  NIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLV 372

Query: 2576 GPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2397
            GPTLD  F+  +N   +PS ++E +LE +  L  CC EP KWL EQY KYR     P+  
Sbjct: 373  GPTLDTEFYNLLNG--LPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPA 430

Query: 2396 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2217
             ISL  GLVY+ RVQ+TPSKVYF  PEV VSNRVLR + N +DNF+R+SF+DE+   +RS
Sbjct: 431  AISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRS 490

Query: 2216 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2037
            TDLS R +   + KHT +Y R+LSTL+NGIVIGDKKF+ LAFSSSQLR++SAWMF+  DG
Sbjct: 491  TDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDG 550

Query: 2036 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 1857
            +TAA IR+WMGDF  IRNVAK AAR+GQSF SS ETL V                  KY+
Sbjct: 551  ITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNG----KYV 606

Query: 1856 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1677
            FSDGIGKIS  FA+KVA KCG     PSAFQIRYGGYKGVVAVDPTS  KLSLR SM KY
Sbjct: 607  FSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKY 666

Query: 1676 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1497
            +S+NT LDVL +SK QPCFLNRQ+ITLLSTLGV+D++FE KQK+ V QLD IL DP  A 
Sbjct: 667  SSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAF 726

Query: 1496 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1317
            EAL++MSPGENVNVLKEML CGY PD+EPFLSMMLQTFR  KL EL+ ++RI+IPNGRSM
Sbjct: 727  EALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSM 786

Query: 1316 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1137
            MGCLDET  LEYGQVFVQFS  G +++ +  L       S+QR  +V GKVIVAKNPCLH
Sbjct: 787  MGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLH 846

Query: 1136 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 957
            PGD+R+L A++VP LHHMV+CVVFPQKG RPHPNECSGSDLDGD+YFVSWD  LIP  Q 
Sbjct: 847  PGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQG 906

Query: 956  QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 777
             PM+Y PA +   LDH+VTIE+I+EYFTNYM+NDSLG+IANAHT FADKE   A+S  C+
Sbjct: 907  TPMEYEPAPNN-DLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCV 965

Query: 776  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 597
            +LA LFSVAVDFPKTGVPA IP HL+VKEYPDFM+K DKP+Y S+RVIGKLFREVK++ P
Sbjct: 966  DLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPP 1025

Query: 596  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 417
             T+ I SFT +VA KSYD DME DGFE YLDDA++ K +YDFKL  LM++YGIKTEAE  
Sbjct: 1026 HTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIV 1085

Query: 416  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGE----TAGEKYAKASAW 249
                     SF +++DAEA+ LA++SL+KE R WF +K S   E       + YAKASAW
Sbjct: 1086 SGNILSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAW 1145

Query: 248  YHVTYHPNYWGIY--NEGMKRDHFLSFPWCVYDKLIHIKKNNSKR 120
            YH+TYHP YWG Y   +G  R HF+SFPWC+YDKLIHIK++   R
Sbjct: 1146 YHITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGR 1190


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 681/1125 (60%), Positives = 818/1125 (72%), Gaps = 2/1125 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP+ VSAE VK+FLE   G  TVYA++VR  K  G   R +AIVQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
              LI +   + L YG SYLK + VE DIV KPRAS+ ++    + FGCQVS++KF  LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
                 V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ APK
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            I+EK              D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P  
Sbjct: 179  IFEKEDQPINLLFGIM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-D 235

Query: 2753 IRENFPYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCL 2580
             RENF  Y E     F +ESGSS+S N + LVP+V PP G  LP+E+LFK+N LVQN CL
Sbjct: 236  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 295

Query: 2579 AGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNA 2400
            +GP LD  F+  +N +    A I+H LE+L+HL ECCYEP  WL ++Y K+      P +
Sbjct: 296  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 355

Query: 2399 PGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLR 2220
            P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+R
Sbjct: 356  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 415

Query: 2219 STDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKD 2040
            S DLSPR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  D
Sbjct: 416  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 472

Query: 2039 GLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKY 1860
             +TAA IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +Y
Sbjct: 473  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 532

Query: 1859 IFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFK 1680
            +FSDGIGKIS  FA+KVA+KCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K
Sbjct: 533  VFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 592

Query: 1679 YTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRA 1500
            + S+NT LDVL WSK QPC++NRQLITLLSTLGV D +FEKKQ+EVVD+LD ILT P+ A
Sbjct: 593  FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEA 652

Query: 1499 QEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRS 1320
             EAL +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GRS
Sbjct: 653  HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 712

Query: 1319 MMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCL 1140
            MMGCLDETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPCL
Sbjct: 713  MMGCLDETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPCL 756

Query: 1139 HPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQ 960
            H GD+RVLQAVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD EL+PPR 
Sbjct: 757  HSGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRT 816

Query: 959  IQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGAC 780
             +PMDYTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C
Sbjct: 817  SEPMDYTPEPTQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPC 875

Query: 779  MELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEIT 600
            +ELA+ FS AVDFPKTGV A IP HL+VKEYPDFMEK DKP+Y S+ VIGKLFREVKE  
Sbjct: 876  IELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERA 935

Query: 599  PQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEX 420
            P    I SFT  VA KSYD DME DGFE+Y+D+A+Y K  YDFKLGNLM+YYGIKTEAE 
Sbjct: 936  PPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEI 995

Query: 419  XXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHV 240
                      SF +++DAE++G AV++L+KE  + F+    +  E+     AKASAWYHV
Sbjct: 996  LSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES-----AKASAWYHV 1050

Query: 239  TYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 105
            TYH +YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ  E
Sbjct: 1051 TYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQE 1095


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 1329 bits (3440), Expect = 0.0
 Identities = 681/1126 (60%), Positives = 823/1126 (73%), Gaps = 3/1126 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP+ VSAE VK+FLE   G  TVYA++VR  K  G   R FAIVQFT    
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERY 58

Query: 3293 A-ELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLW 3117
            A ++I+    + L YG SYL  + V+ DIV KPRAS+ ++    ++FGCQVS++KF  LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118

Query: 3116 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 2937
                  V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ AP
Sbjct: 119  SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178

Query: 2936 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2757
            KI+EK              D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P 
Sbjct: 179  KIFEKEDQPINLLFGMM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP- 235

Query: 2756 QIRENFPYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGC 2583
              RENF  Y E     F +ESGSS+S N + LVP+V PP G +LP+E+LFK+N LVQN C
Sbjct: 236  DFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNAC 295

Query: 2582 LAGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPN 2403
            L GP LD   +  +NP+    A I+H LE+L+HL E CYEP +WL +QY +       P 
Sbjct: 296  LPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPL 355

Query: 2402 APGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKL 2223
            +P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+
Sbjct: 356  SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 415

Query: 2222 RSTDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASK 2043
            RS DLSPR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  
Sbjct: 416  RSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 472

Query: 2042 DGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVK 1863
            DGLT+A IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +
Sbjct: 473  DGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 532

Query: 1862 YIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMF 1683
            Y+FSDGIGKIS  FA++VAKKCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM 
Sbjct: 533  YVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 592

Query: 1682 KYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVR 1503
            K+ S+NT LDVL WSK QPC++NRQLITLLSTLGV+D +F+KKQ+EVVD+LD ILTDP+ 
Sbjct: 593  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLE 652

Query: 1502 AQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGR 1323
            A EAL +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GR
Sbjct: 653  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 712

Query: 1322 SMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPC 1143
            SMMGCLDETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPC
Sbjct: 713  SMMGCLDETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPC 756

Query: 1142 LHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPR 963
            LHPGD+RVL+AVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD ELIPPR
Sbjct: 757  LHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPR 816

Query: 962  QIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGA 783
              +PMDYTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  
Sbjct: 817  TSEPMDYTPEPAQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDP 875

Query: 782  CMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEI 603
            C+ELAR FSVAVDFPKTGV A IP HLHVKEYPDFMEK DKP+Y S+ VIGKLFREVKE 
Sbjct: 876  CIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKER 935

Query: 602  TPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAE 423
             P    I SFT  VA KSYD DME DGFE+Y+D+A++ K  YDFKLGNLM+YYGIKTEAE
Sbjct: 936  APPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAE 995

Query: 422  XXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYH 243
                       SF +++DAE++G AV++L+KE  + F+    ++      + AKASAWYH
Sbjct: 996  ILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEEN------ESAKASAWYH 1049

Query: 242  VTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 105
            VTYH +YWG+YNEG+ RDHFL F WCVYDKL+ IKK N+ RRQ  E
Sbjct: 1050 VTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKKTNAGRRQRQE 1095


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1329 bits (3440), Expect = 0.0
 Identities = 679/1122 (60%), Positives = 832/1122 (74%), Gaps = 3/1122 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP  +SAEAVK FLENH G  TVYAL V+  K     +RAFA VQF    S
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGG---RRAFAKVQFANNKS 57

Query: 3293 AELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLWK 3114
            AE+I  L ++ L YG SYLK + ++  IV +PR  +  ++   L+FGCQ+S +KF  L  
Sbjct: 58   AEIIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116

Query: 3113 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 2934
             V ++  FG GL+K+ F L +   +YKL++SY++IW + L RP   + +FLL+Q+  AP+
Sbjct: 117  KVVSI-KFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPR 175

Query: 2933 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2754
            IY++ +             +FK+  +DQWVR TDFT S+ IG SS++CLE       P  
Sbjct: 176  IYKRLEDSCY--------SFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLP-N 225

Query: 2753 IRENFPYYKEDEGQFCVESGSSFSHN---LDLVPIVGPPRGIELPYEVLFKINLLVQNGC 2583
              E+F YYKE   Q  +++G +FS +   L LVPIV  P GIELPY++LFKI+ L+Q+GC
Sbjct: 226  FSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGC 285

Query: 2582 LAGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPN 2403
              G  L+  FF  V+P+    A IEHALE+LY+L ECCY+PV+WL EQY +Y +    P 
Sbjct: 286  FPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPK 345

Query: 2402 APGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKL 2223
            +P I+L DGLVY+RRV +TP KVYFC PEV VSNRVLRNY   +DNF+RVSFVDEE EK+
Sbjct: 346  SPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKI 405

Query: 2222 RSTDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASK 2043
             STDL PR S T +   T IY RILSTLRNG VIGDKKF+ LAFSSSQLR++S WMFAS+
Sbjct: 406  HSTDLLPRAS-TGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 464

Query: 2042 DGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVK 1863
             GLTA  IR WMG F++IRNVAKYAARLGQSF SS+ETL+V                G  
Sbjct: 465  PGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 524

Query: 1862 YIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMF 1683
            YIFSDGIGKIS  FA++VA KCG+  + PS FQIRYGGYKGVVAVDP S  KLSLR SM 
Sbjct: 525  YIFSDGIGKISADFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSML 583

Query: 1682 KYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVR 1503
            KY S+N  LDVL WSK QPC+LNRQL+TLLSTLGV+D +FE+KQ E VDQLD IL D ++
Sbjct: 584  KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLK 643

Query: 1502 AQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGR 1323
            AQEAL++MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKL +LR RSRI+IPNGR
Sbjct: 644  AQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGR 703

Query: 1322 SMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPC 1143
            +MMGCLDE+RTLEYGQVFVQF+G G +Q  +     +    S   ++I+EG V+VAKNPC
Sbjct: 704  TMMGCLDESRTLEYGQVFVQFTGTGRRQFYEES-HPFNDSGSTNCDFILEGNVVVAKNPC 762

Query: 1142 LHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPR 963
            LHPGD+RVL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD +L+PPR
Sbjct: 763  LHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPR 822

Query: 962  QIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGA 783
            Q QPMDYTPA S  +LDHDVTIE+++EYFTNY++NDSLG+IANAH  FAD+E  MA S  
Sbjct: 823  QFQPMDYTPAPS-TQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 881

Query: 782  CMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEI 603
            C +LA+LFS+AVDFPKTGVPA IP  L  KEYPDFMEK DKP+Y S++VIGKLF++VK+ 
Sbjct: 882  CKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDK 941

Query: 602  TPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAE 423
            TPQ + I +FT  VA+KSYD DM  +GFEDY+D+A+Y K +YD KLGNLM+YYGIKTEAE
Sbjct: 942  TPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAE 1001

Query: 422  XXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYH 243
                       +FDR+KDA+A+G+AV+SL+KEAR WF     K      +  AKASAWYH
Sbjct: 1002 ILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWF-----KRRSDIDDMLAKASAWYH 1056

Query: 242  VTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRR 117
            VTYH  YWG YNEG+KRDHF+SFPWC+YD+LI IKK  ++++
Sbjct: 1057 VTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKK 1098


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score = 1323 bits (3424), Expect = 0.0
 Identities = 678/1126 (60%), Positives = 822/1126 (73%), Gaps = 3/1126 (0%)
 Frame = -3

Query: 3473 MGRTIQVSGFPSSVSAEAVKEFLENHVGKDTVYALRVRPCKVKGVQQRAFAIVQFTTAAS 3294
            MG+TIQV GFP+ VSAE VK+FLE   G  TVYA++VR  K  G   R FAIVQFT    
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNEIY 58

Query: 3293 A-ELISSLINQNLRYGISYLKVYNVENDIVAKPRASMLSLEITALHFGCQVSSEKFCGLW 3117
            A ++I+    + L YG SYL  + VE DIV KPRAS+ ++    ++FGCQVS++    LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118

Query: 3116 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 2937
                  V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ AP
Sbjct: 119  SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178

Query: 2936 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2757
            KI+EK              D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P 
Sbjct: 179  KIFEKEDQPINLLFGMM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP- 235

Query: 2756 QIRENFPYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGC 2583
              RENF  Y E     + +ESGSS+S N + LVP+V PP G +LP+E+LFK+N LVQN C
Sbjct: 236  DFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNAC 295

Query: 2582 LAGPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPN 2403
            L GP LD   +  +NP+ I  A I+H LE+L++L E CYEP +WL +QY +       P 
Sbjct: 296  LPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPL 355

Query: 2402 APGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKL 2223
            +P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+
Sbjct: 356  SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 415

Query: 2222 RSTDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASK 2043
            RS DLSPR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  
Sbjct: 416  RSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 472

Query: 2042 DGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVK 1863
            +GLT+A IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +
Sbjct: 473  EGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 532

Query: 1862 YIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMF 1683
            Y+FSDGIGKIS  FA++VAKKCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM 
Sbjct: 533  YVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 592

Query: 1682 KYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVR 1503
            K+ S+NT LDVL WSK QPC++NRQLITLLSTLGV D +FEKKQ+EVVD+LD ILTDP+ 
Sbjct: 593  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLE 652

Query: 1502 AQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGR 1323
            A EAL +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GR
Sbjct: 653  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 712

Query: 1322 SMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPC 1143
            SMMGCLDETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPC
Sbjct: 713  SMMGCLDETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPC 756

Query: 1142 LHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPR 963
            LHPGD+RVL+AVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD ELIPPR
Sbjct: 757  LHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPR 816

Query: 962  QIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGA 783
              +PMDYTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  
Sbjct: 817  TSEPMDYTPEPAQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDP 875

Query: 782  CMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEI 603
            C+ELAR FSVAVDFPKTGV A IP HL+VKEYPDFMEK DKP+Y S+ VIGKLFREVKE 
Sbjct: 876  CIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKER 935

Query: 602  TPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAE 423
             P    I SFT  VA KSYD DME DGFE+Y+D+A++ K  YDFKLGNLM+YYGIKTEAE
Sbjct: 936  APPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAE 995

Query: 422  XXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYH 243
                       SF +++DAE++G AV++L+KE  + F+    ++      + AKASAWYH
Sbjct: 996  ILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEEN------ESAKASAWYH 1049

Query: 242  VTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 105
            +TYH +YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N+ RRQ  E
Sbjct: 1050 ITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNAGRRQRQE 1095