BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00050082
         (395 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522403.1| DNA-directed RNA polymerase beta chain, puta...    65   7e-09
ref|YP_009026873.1| RNA polymerase beta subunit [Magnolia tripet...    65   1e-08
ref|YP_008993684.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993856.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993770.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993598.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993512.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993426.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993254.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008993168.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_008592631.1| RNA polymerase beta subunit (chloroplast) [B...    65   1e-08
ref|YP_007474528.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
ref|YP_007474362.1| RNA polymerase beta subunit (chloroplast) [M...    65   1e-08
gb|AEX98243.1| RNA polymerase beta subunit (chloroplast) [Magnol...    65   1e-08
gb|AAZ03991.1| RNA polymerase beta chain [Acorus americanus]           65   1e-08
ref|YP_319757.1| RNA polymerase beta subunit [Acorus calamus] gi...    65   1e-08
sp|Q5QA72.1|RPOB_ACOGR RecName: Full=DNA-directed RNA polymerase...    65   1e-08
ref|YP_053147.1| RNA polymerase beta subunit [Nymphaea alba] gi|...    65   1e-08
sp|Q7YJX8.1|RPOB_CALFG RecName: Full=DNA-directed RNA polymerase...    65   1e-08
ref|YP_006576107.1| RpoB (chloroplast) [Magnolia denudata] gi|34...    65   1e-08

>ref|XP_002522403.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
           gi|223538288|gb|EEF39895.1| DNA-directed RNA polymerase
           beta chain, putative [Ricinus communis]
          Length = 163

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 34/42 (80%), Positives = 36/42 (85%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDVS*VLAKDAL 130
           +RLLRAILGIQVST+KETCLKLPIGGRGRVIDV  V  K  L
Sbjct: 11  DRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGL 52


>ref|YP_009026873.1| RNA polymerase beta subunit [Magnolia tripetala]
           gi|608608396|gb|AHW51950.1| RNA polymerase beta subunit
           [Magnolia tripetala]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993684.1| RNA polymerase beta subunit (chloroplast) [Magnolia salicifolia]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993856.1| RNA polymerase beta subunit (chloroplast) [Magnolia sprengeri]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993770.1| RNA polymerase beta subunit (chloroplast) [Magnolia sinica]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993598.1| RNA polymerase beta subunit (chloroplast) [Magnolia odora]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993512.1| RNA polymerase beta subunit (chloroplast) [Magnolia liliifera]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993426.1| RNA polymerase beta subunit (chloroplast) [Magnolia kobus]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993254.1| RNA polymerase beta subunit (chloroplast) [Magnolia dealbata]
           gi|570759917|ref|YP_008993340.1| RNA polymerase beta
           subunit (chloroplast) [Magnolia pyramidata]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008993168.1| RNA polymerase beta subunit (chloroplast) [Magnolia cathcartii]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_008592631.1| RNA polymerase beta subunit (chloroplast) [Berberis bealei]
           gi|536462672|gb|AGU37037.1| RNA polymerase beta subunit
           (chloroplast) [Berberis bealei]
          Length = 1070

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 756 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 788


>ref|YP_007474528.1| RNA polymerase beta subunit (chloroplast) [Magnolia grandiflora]
           gi|372862835|gb|AEX98911.1| RNA polymerase beta subunit
           (chloroplast) [Magnolia grandiflora]
           gi|372863005|gb|AEX99079.1| RNA polymerase beta subunit
           (chloroplast) [Magnolia grandiflora]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>ref|YP_007474362.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis]
           gi|452848763|ref|YP_007474444.1| RNA polymerase beta
           subunit (chloroplast) [Magnolia officinalis subsp.
           biloba] gi|372862413|gb|AEX98494.1| RNA polymerase beta
           subunit (chloroplast) [Magnolia officinalis]
           gi|372862496|gb|AEX98576.1| RNA polymerase beta subunit
           (chloroplast) [Magnolia officinalis subsp. biloba]
           gi|372862581|gb|AEX98660.1| RNA polymerase beta subunit
           (chloroplast) [Magnolia officinalis subsp. biloba]
           gi|372862666|gb|AEX98744.1| RNA polymerase beta subunit
           (chloroplast) [Magnolia officinalis subsp. biloba]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>gb|AEX98243.1| RNA polymerase beta subunit (chloroplast) [Magnolia liliiflora]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797


>gb|AAZ03991.1| RNA polymerase beta chain [Acorus americanus]
          Length = 1068

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 754 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 786


>ref|YP_319757.1| RNA polymerase beta subunit [Acorus calamus]
           gi|74381701|emb|CAI53786.1| RNA polymerase beta subunit
           [Acorus calamus]
          Length = 1083

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 769 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 801


>sp|Q5QA72.1|RPOB_ACOGR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|56122473|gb|AAV74361.1| RpoB [Acorus gramineus]
          Length = 1071

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 757 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 789


>ref|YP_053147.1| RNA polymerase beta subunit [Nymphaea alba]
           gi|68053165|sp|Q6EW56.1|RPOB_NYMAL RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|50250319|emb|CAF28585.1| RNA polymerase beta subunit
           [Nymphaea alba]
          Length = 1071

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 757 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 789


>sp|Q7YJX8.1|RPOB_CALFG RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|32399371|emb|CAD28713.1| RNA polymerase beta subunit
           [Calycanthus floridus var. glaucus]
          Length = 1060

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 746 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 778


>ref|YP_006576107.1| RpoB (chloroplast) [Magnolia denudata] gi|343887531|gb|AEM65210.1|
           RpoB [Magnolia denudata] gi|372862243|gb|AEX98326.1| RNA
           polymerase beta subunit (chloroplast) [Magnolia
           denudata]
          Length = 1079

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 255 NRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 157
           +RLLRAILGIQVSTAKETCLKLPIGGRGRVIDV
Sbjct: 765 DRLLRAILGIQVSTAKETCLKLPIGGRGRVIDV 797