BLASTX nr result
ID: Sinomenium21_contig00048778
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00048778
(372 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006428587.1| hypothetical protein CICLE_v10012311mg [Citr... 147 1e-33
ref|XP_002278210.2| PREDICTED: uncharacterized protein LOC100256... 147 2e-33
ref|XP_004144123.1| PREDICTED: uncharacterized protein LOC101209... 136 3e-30
ref|XP_007012676.1| DNA-directed RNA polymerase III subunit RPC4... 135 8e-30
ref|XP_006362806.1| PREDICTED: uncharacterized protein LOC102600... 133 3e-29
ref|XP_007154594.1| hypothetical protein PHAVU_003G132000g [Phas... 126 3e-27
gb|EXB38927.1| DNA-directed RNA polymerase III subunit RPC4 [Mor... 123 3e-26
ref|XP_007204524.1| hypothetical protein PRUPE_ppa017748mg [Prun... 123 3e-26
ref|XP_002516293.1| DNA binding protein, putative [Ricinus commu... 120 1e-25
emb|CBI27823.3| unnamed protein product [Vitis vinifera] 114 2e-23
ref|XP_003550619.1| PREDICTED: uncharacterized protein LOC100802... 113 2e-23
ref|XP_003541303.2| PREDICTED: uncharacterized protein LOC100782... 109 4e-22
ref|XP_004495578.1| PREDICTED: DNA-directed RNA polymerase III s... 108 1e-21
gb|AFK44935.1| unknown [Medicago truncatula] 107 2e-21
ref|XP_003590974.1| DNA-directed RNA polymerase III subunit RPC4... 107 2e-21
gb|ACU24406.1| unknown [Glycine max] 105 8e-21
ref|XP_006847937.1| hypothetical protein AMTR_s00029p00131600 [A... 103 2e-20
ref|XP_002873399.1| DNA-directed RNA polymerase III RPC4 family ... 103 2e-20
ref|XP_006587708.1| PREDICTED: DNA-directed RNA polymerase III s... 102 4e-20
ref|XP_003534408.1| PREDICTED: DNA-directed RNA polymerase III s... 102 4e-20
>ref|XP_006428587.1| hypothetical protein CICLE_v10012311mg [Citrus clementina]
gi|568853572|ref|XP_006480425.1| PREDICTED:
uncharacterized protein LOC102622464 [Citrus sinensis]
gi|557530644|gb|ESR41827.1| hypothetical protein
CICLE_v10012311mg [Citrus clementina]
Length = 303
Score = 147 bits (372), Expect = 1e-33
Identities = 77/133 (57%), Positives = 93/133 (69%), Gaps = 10/133 (7%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSG--RGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSH 175
ADAAQ DLL+R N G +G+PK EKK AP Q+AFGQGG+S F+ SYG K +S S
Sbjct: 40 ADAAQAMDLLQRFNANQGALKGRPKVEKKVAPSQIAFGQGGASTFIKSYGIPKGGSSSSR 99
Query: 176 GVTS--------NGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADI 331
G S +G R K+Y+EPW+YYSYYPV+LPLRRPYSG P LLDEEEFGE+S I
Sbjct: 100 GQGSAVNGGAHASGTRLGKEYQEPWDYYSYYPVSLPLRRPYSGSPELLDEEEFGEASETI 159
Query: 332 TNEENSINSAIEL 370
+E+S+N A EL
Sbjct: 160 NYDESSMNPAEEL 172
>ref|XP_002278210.2| PREDICTED: uncharacterized protein LOC100256088 [Vitis vinifera]
Length = 289
Score = 147 bits (370), Expect = 2e-33
Identities = 73/130 (56%), Positives = 91/130 (70%), Gaps = 8/130 (6%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSH--- 175
DAAQ +L+R NE S +GKPKAEKK AP QVAFG GG+S + SYGT + + S
Sbjct: 42 DAAQANELMRHFNEASMKGKPKAEKKLAPTQVAFGYGGASASIRSYGTPRGATNSSRYQD 101
Query: 176 -----GVTSNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNE 340
G+ +G +K+Y+EPW+YY+YYPVTLPLRRPYSG+P LLDEEEFGE+S +
Sbjct: 102 PASGGGLYGSGLSDHKEYKEPWDYYTYYPVTLPLRRPYSGNPELLDEEEFGEASESTAYD 161
Query: 341 ENSINSAIEL 370
ENS N A+EL
Sbjct: 162 ENSTNPAMEL 171
>ref|XP_004144123.1| PREDICTED: uncharacterized protein LOC101209454 [Cucumis sativus]
gi|449500539|ref|XP_004161125.1| PREDICTED:
uncharacterized LOC101209454 [Cucumis sativus]
Length = 293
Score = 136 bits (342), Expect = 3e-30
Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 3/126 (2%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHGV 181
ADAAQ RDLL+R NE + R K + +K+AP QVAFG GGSS+ + SYG SK +G+
Sbjct: 40 ADAAQARDLLKRFNESTQRAKQRVGRKAAPTQVAFGSGGSSSTLRSYGVSK---AGNRPR 96
Query: 182 TSNGQ---RANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSI 352
+G +K+Y EPW+YYSYYPVTLPLRRPYSG+P L+EEEFGE+S ++T +EN+
Sbjct: 97 NEDGTLPASTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASENLTYDENTT 156
Query: 353 NSAIEL 370
+A+ L
Sbjct: 157 TAAMNL 162
>ref|XP_007012676.1| DNA-directed RNA polymerase III subunit RPC4, putative [Theobroma
cacao] gi|508783039|gb|EOY30295.1| DNA-directed RNA
polymerase III subunit RPC4, putative [Theobroma cacao]
Length = 294
Score = 135 bits (339), Expect = 8e-30
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 5/127 (3%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHG-- 178
DA Q RDLL+R+N+ S + KPK EKK A QVAFG GG+S M +G SK + S
Sbjct: 39 DAVQARDLLQRLNQTSAKTKPKVEKKVASSQVAFGHGGASASMKLFGVSKGASRTSRETL 98
Query: 179 ---VTSNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENS 349
V + G R K+YREPW+YYSYYPVTLP+RRPYSG+P LDEEEF +S +IT +ENS
Sbjct: 99 NGVVHTPGLREEKEYREPWDYYSYYPVTLPMRRPYSGNPEFLDEEEF--ASENITFDENS 156
Query: 350 INSAIEL 370
+ A+EL
Sbjct: 157 VEPAVEL 163
>ref|XP_006362806.1| PREDICTED: uncharacterized protein LOC102600766 [Solanum tuberosum]
Length = 283
Score = 133 bits (334), Expect = 3e-29
Identities = 65/122 (53%), Positives = 85/122 (69%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHGVT 184
DAA+ +L++R NE S + K K EKK P QVAFG GGSS+ + SYG ++
Sbjct: 41 DAAKAEELMQRFNEASAKVKHKVEKKG-PTQVAFGYGGSSSSLKSYGHYNKVSGSMSDGG 99
Query: 185 SNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINSAI 364
G+R K+Y EPW+YY+ YPVTLP+RRPYSG+P LLDEEEFGE+S +T +ENSI A+
Sbjct: 100 IGGERVQKEYTEPWDYYTNYPVTLPVRRPYSGNPELLDEEEFGEASRSLTYDENSIKPAM 159
Query: 365 EL 370
+L
Sbjct: 160 DL 161
>ref|XP_007154594.1| hypothetical protein PHAVU_003G132000g [Phaseolus vulgaris]
gi|593783109|ref|XP_007154595.1| hypothetical protein
PHAVU_003G132000g [Phaseolus vulgaris]
gi|561027948|gb|ESW26588.1| hypothetical protein
PHAVU_003G132000g [Phaseolus vulgaris]
gi|561027949|gb|ESW26589.1| hypothetical protein
PHAVU_003G132000g [Phaseolus vulgaris]
Length = 291
Score = 126 bits (317), Expect = 3e-27
Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHGV 181
ADA Q +DLLRR NE + + + K EKK + Q+AFG GG S + SYG I G V
Sbjct: 39 ADANQAKDLLRRFNESAMKARNKVEKKVSASQIAFGYGGESTSLKSYG----IGRGGRNV 94
Query: 182 TSNGQR-----ANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEEN 346
N A K+Y EPW+YYS YPVTLPLRRPYSG+P LLDEEEFGE++ T +E
Sbjct: 95 NINPNSTSSAVAEKEYTEPWDYYSNYPVTLPLRRPYSGNPELLDEEEFGEAAEARTYDEE 154
Query: 347 SINSAIEL 370
+ NSA+EL
Sbjct: 155 ATNSAMEL 162
>gb|EXB38927.1| DNA-directed RNA polymerase III subunit RPC4 [Morus notabilis]
Length = 328
Score = 123 bits (308), Expect = 3e-26
Identities = 70/156 (44%), Positives = 82/156 (52%), Gaps = 34/156 (21%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHGVT 184
DA Q R LLRR NEGS R KPK EKK A QVAFG GG+SN + SYG K S G
Sbjct: 41 DADQARVLLRRFNEGSTRAKPKVEKKVAAAQVAFGYGGASNTIRSYGVPKGGYRNSQGPP 100
Query: 185 S----------------------------------NGQRANKDYREPWNYYSYYPVTLPL 262
+ +G R K+Y+EPW+YYSYYP TLP
Sbjct: 101 ATRMLFTSAAFLSTVNKSFPMHDIKNHVLTDGAFPSGTRQEKEYKEPWDYYSYYPSTLPF 160
Query: 263 RRPYSGDPVLLDEEEFGESSADITNEENSINSAIEL 370
RRP+SG+P LDEEEFG + I +E S +A EL
Sbjct: 161 RRPHSGNPEFLDEEEFGADTETINYDETSAKAATEL 196
>ref|XP_007204524.1| hypothetical protein PRUPE_ppa017748mg [Prunus persica]
gi|462400055|gb|EMJ05723.1| hypothetical protein
PRUPE_ppa017748mg [Prunus persica]
Length = 281
Score = 123 bits (308), Expect = 3e-26
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKN-IASGSHG 178
+DA + ++LL+R NE S R + K EKK P Q+ FG GG+S M SYG K AS +
Sbjct: 27 SDAEKAKELLKRFNEQSSRARLKVEKKVVPTQIVFGYGGASTTMKSYGAPKGGSASSATN 86
Query: 179 VTSNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINS 358
++G + K+Y PW+ YSYYPVTLPLR PYSG+P + +EEEFGE S + T +ENS
Sbjct: 87 AGASGVKEEKEYSSPWDQYSYYPVTLPLRPPYSGNPEIRNEEEFGEGSEESTYDENSTTP 146
Query: 359 AIEL 370
A +L
Sbjct: 147 ANDL 150
>ref|XP_002516293.1| DNA binding protein, putative [Ricinus communis]
gi|223544779|gb|EEF46295.1| DNA binding protein,
putative [Ricinus communis]
Length = 286
Score = 120 bits (302), Expect = 1e-25
Identities = 67/129 (51%), Positives = 82/129 (63%), Gaps = 7/129 (5%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSH--G 178
DA Q L+++ E S R KPKAEKK Q+AFG G +S + SY K A+ +H G
Sbjct: 38 DATQAMKLMKQFQERSMRAKPKAEKKVQASQIAFGFGAASPSIKSYAAPKVGAAVNHNQG 97
Query: 179 VTSNG-----QRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEE 343
+ NG + K+Y EPWNYYSYYPVTLPLRRPYSG+P L+ EEFGE+S +E
Sbjct: 98 SSVNGGAYSSELGEKEYIEPWNYYSYYPVTLPLRRPYSGNPATLNAEEFGEASDTSEYDE 157
Query: 344 NSINSAIEL 370
NS NSAI L
Sbjct: 158 NSTNSAINL 166
>emb|CBI27823.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 114 bits (284), Expect = 2e-23
Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 8/103 (7%)
Frame = +2
Query: 86 APVQVAFGQGGSSNFMWSYGTSKNIASGSH--------GVTSNGQRANKDYREPWNYYSY 241
AP QVAFG GG+S + SYGT + + S G+ +G +K+Y+EPW+YY+Y
Sbjct: 79 APTQVAFGYGGASASIRSYGTPRGATNSSRYQDPASGGGLYGSGLSDHKEYKEPWDYYTY 138
Query: 242 YPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINSAIEL 370
YPVTLPLRRPYSG+P LLDEEEFGE+S +ENS N A+EL
Sbjct: 139 YPVTLPLRRPYSGNPELLDEEEFGEASESTAYDENSTNPAMEL 181
>ref|XP_003550619.1| PREDICTED: uncharacterized protein LOC100802173 [Glycine max]
Length = 298
Score = 113 bits (283), Expect = 2e-23
Identities = 61/126 (48%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSG--RGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSH 175
A+ A +LL+R NE + K K EKK Q+AFG GG S M SYG + +S +
Sbjct: 42 AEQAAKENLLKRFNERESAMKAKYKVEKKVLASQIAFGYGGESTSMKSYGIPRGGSSINI 101
Query: 176 GVTSNGQRAN-KDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSI 352
++S K+Y+EPW+YYS YPVTLPLRRPYSG+P LLD+EEF E++ T EEN+
Sbjct: 102 NLSSASSGGKEKEYQEPWDYYSNYPVTLPLRRPYSGNPALLDDEEFAEAAQSRTYEENAS 161
Query: 353 NSAIEL 370
NS ++L
Sbjct: 162 NSTMDL 167
>ref|XP_003541303.2| PREDICTED: uncharacterized protein LOC100782982 [Glycine max]
Length = 318
Score = 109 bits (272), Expect = 4e-22
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSG--RGKPKAEKKSAPVQVAFGQGGSSNFMWSYG-----TSKNI 160
A+ A +LL+R +E + K K EKK Q+AFG GG S M SYG +S NI
Sbjct: 46 AEHAAKENLLKRFHERESAVKAKYKVEKKVLASQIAFGYGGESTSMKSYGIPRGGSSINI 105
Query: 161 ASGSHGVTSNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNE 340
S SNG + K+Y+EPW+Y S YPVTLPLRRPYSG+P LLD++EFGE++ +
Sbjct: 106 NQSS---ASNGAK-EKEYQEPWDYDSNYPVTLPLRRPYSGNPALLDDQEFGEAAEPRAYD 161
Query: 341 ENSINSAIEL 370
EN+ NSA+EL
Sbjct: 162 ENASNSAMEL 171
>ref|XP_004495578.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cicer
arietinum]
Length = 298
Score = 108 bits (269), Expect = 1e-21
Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Frame = +2
Query: 8 AAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHG--V 181
AA ++LLRR NE + + + K EKK + Q+AFG GG S SY K+ + S G +
Sbjct: 44 AADAKELLRRFNENAMKARMKVEKKVSASQIAFGFGGESVSRKSYNIPKSESKTSFGENL 103
Query: 182 TSNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINSA 361
NG + K+Y+EPW+ S YP+ LPLR+PYSGDP L+EEEFGE++ T +E+ NSA
Sbjct: 104 AFNGVK-EKEYQEPWDMNSNYPIALPLRKPYSGDPEYLNEEEFGEAAITRTYDESKSNSA 162
Query: 362 IEL 370
+EL
Sbjct: 163 MEL 165
>gb|AFK44935.1| unknown [Medicago truncatula]
Length = 288
Score = 107 bits (266), Expect = 2e-21
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Frame = +2
Query: 17 TRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGT---SKNIASGSHGVTS 187
T DLL+R NE + + K EKK P Q+AFG GG S ++ SYGT SK+ S +GVT
Sbjct: 47 TMDLLQRHNENAMNRRMKHEKKVLPSQIAFGAGGQSTYLKSYGTKGGSKSENSAFYGVTE 106
Query: 188 NGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINSAIE 367
K+Y+EPW + YP+ PLR+PYSG+P LDE+EFGE++ T +E++ +SA+E
Sbjct: 107 ------KEYKEPWELDTEYPIVHPLRKPYSGNPEKLDEKEFGETAESRTYDESAASSAVE 160
Query: 368 L 370
L
Sbjct: 161 L 161
>ref|XP_003590974.1| DNA-directed RNA polymerase III subunit RPC4 [Medicago truncatula]
gi|355480022|gb|AES61225.1| DNA-directed RNA polymerase
III subunit RPC4 [Medicago truncatula]
Length = 288
Score = 107 bits (266), Expect = 2e-21
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Frame = +2
Query: 17 TRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGT---SKNIASGSHGVTS 187
T DLL+R NE + + K EKK P Q+AFG GG S ++ SYGT SK+ S +GVT
Sbjct: 47 TMDLLQRHNENAMNRRMKHEKKVLPSQIAFGAGGQSTYLKSYGTKGGSKSENSAFYGVTE 106
Query: 188 NGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINSAIE 367
K+Y+EPW + YP+ PLR+PYSG+P LDE+EFGE++ T +E++ +SA+E
Sbjct: 107 ------KEYKEPWELDTEYPIVHPLRKPYSGNPEKLDEKEFGETAESRTYDESAASSAVE 160
Query: 368 L 370
L
Sbjct: 161 L 161
>gb|ACU24406.1| unknown [Glycine max]
Length = 303
Score = 105 bits (261), Expect = 8e-21
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 25/147 (17%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNF-MWSYGTSKNIASGSHGV 181
D+ R L RR +E + +PK E+KS+ V+VAF G SS+ + +YGTSK+I SG+
Sbjct: 37 DSEVPRALSRRRHENPAKREPKVERKSS-VEVAFSLGSSSSHSLRTYGTSKSIDSGTSSG 95
Query: 182 T-----------------------SNGQRANKDYREPWNYY-SYYPVTLPLRRPYSGDPV 289
+ ++ +R ++YREPW+Y SYYP TLPLR+P SGDP
Sbjct: 96 SPSKYFANEQIRSIATEDQNDASNASARRIKREYREPWDYENSYYPTTLPLRKPNSGDPE 155
Query: 290 LLDEEEFGESSADITNEENSINSAIEL 370
+LDE+EFGE++ + +EN++NSA EL
Sbjct: 156 ILDEKEFGEAATSVEYDENTVNSAAEL 182
>ref|XP_006847937.1| hypothetical protein AMTR_s00029p00131600 [Amborella trichopoda]
gi|548851242|gb|ERN09518.1| hypothetical protein
AMTR_s00029p00131600 [Amborella trichopoda]
Length = 305
Score = 103 bits (258), Expect = 2e-20
Identities = 66/141 (46%), Positives = 82/141 (58%), Gaps = 19/141 (13%)
Frame = +2
Query: 5 DAAQTRDLLRRINEG--SGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGS-- 172
D + +LL+ I + G G K EKK+APVQVAFG G ++NF S SK +S
Sbjct: 38 DEKLSNELLKLIKQRREDGGGWGKNEKKAAPVQVAFGYGNAANFSSSSSYSKGGSSSKPK 97
Query: 173 ---HGVTSNGQ----------RANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFG 313
H Q + K+Y EPW+YYS YPVTLPLRRPYSGDP LDE+EFG
Sbjct: 98 EIGHAFDDGSQLVDVKRDVDEKREKEYVEPWDYYSKYPVTLPLRRPYSGDPETLDEKEFG 157
Query: 314 ESSA--DITNEENSINSAIEL 370
ES+A + NE+ S N+A EL
Sbjct: 158 ESAASKSVCNED-STNAAEEL 177
>ref|XP_002873399.1| DNA-directed RNA polymerase III RPC4 family protein [Arabidopsis
lyrata subsp. lyrata] gi|297319236|gb|EFH49658.1|
DNA-directed RNA polymerase III RPC4 family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 271
Score = 103 bits (257), Expect = 2e-20
Identities = 58/123 (47%), Positives = 81/123 (65%)
Frame = +2
Query: 2 ADAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNFMWSYGTSKNIASGSHGV 181
+++AQ +LLRR+NE S R KPKA+KK +VA+ GG N TS SGS+G
Sbjct: 35 SNSAQALELLRRVNERSLR-KPKADKKVPASRVAW-MGGVVNST----TSNKYLSGSNGA 88
Query: 182 TSNGQRANKDYREPWNYYSYYPVTLPLRRPYSGDPVLLDEEEFGESSADITNEENSINSA 361
+ +Y+EPW+YYSYYP+TLP+RRPY+GDP +LD EEF +++ N E+S+N+A
Sbjct: 89 YGSTSTQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAAG---NHEDSLNTA 145
Query: 362 IEL 370
L
Sbjct: 146 ANL 148
>ref|XP_006587708.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4 isoform X2
[Glycine max]
Length = 292
Score = 102 bits (255), Expect = 4e-20
Identities = 61/147 (41%), Positives = 88/147 (59%), Gaps = 25/147 (17%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNF-MWSYGTSKNIASGSHGV 181
D+ R L RR +E + +PK E+KS+ V+VAF G SS+ + +YGTSK+I SG+
Sbjct: 37 DSEVPRALSRRRHENPAKREPKVERKSS-VEVAFSLGSSSSHSLRTYGTSKSIDSGTSSG 95
Query: 182 TSNGQRAN-----------------------KDYREPWNYY-SYYPVTLPLRRPYSGDPV 289
+ + AN ++Y+EPW+Y SYYP TLPLR+P SGDP
Sbjct: 96 SPSKYFANEQIRSIATEDQNDASNASARKIKREYKEPWDYENSYYPTTLPLRKPNSGDPE 155
Query: 290 LLDEEEFGESSADITNEENSINSAIEL 370
+LDE+EFGE++ + +EN++NSA EL
Sbjct: 156 ILDEKEFGEAATSVEYDENTVNSAAEL 182
>ref|XP_003534408.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4 isoform X1
[Glycine max]
Length = 303
Score = 102 bits (255), Expect = 4e-20
Identities = 61/147 (41%), Positives = 88/147 (59%), Gaps = 25/147 (17%)
Frame = +2
Query: 5 DAAQTRDLLRRINEGSGRGKPKAEKKSAPVQVAFGQGGSSNF-MWSYGTSKNIASGSHGV 181
D+ R L RR +E + +PK E+KS+ V+VAF G SS+ + +YGTSK+I SG+
Sbjct: 37 DSEVPRALSRRRHENPAKREPKVERKSS-VEVAFSLGSSSSHSLRTYGTSKSIDSGTSSG 95
Query: 182 TSNGQRAN-----------------------KDYREPWNYY-SYYPVTLPLRRPYSGDPV 289
+ + AN ++Y+EPW+Y SYYP TLPLR+P SGDP
Sbjct: 96 SPSKYFANEQIRSIATEDQNDASNASARKIKREYKEPWDYENSYYPTTLPLRKPNSGDPE 155
Query: 290 LLDEEEFGESSADITNEENSINSAIEL 370
+LDE+EFGE++ + +EN++NSA EL
Sbjct: 156 ILDEKEFGEAATSVEYDENTVNSAAEL 182