BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00048738
         (803 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   133   7e-29
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   129   1e-27
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               124   5e-26
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...   121   3e-25
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   120   8e-25
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   119   1e-24
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]             118   3e-24
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]             118   3e-24
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   117   4e-24
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]             115   1e-23
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...   115   2e-23
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...   114   4e-23
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...   114   5e-23
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   112   2e-22
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           109   1e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                104   3e-20
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]       104   4e-20
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               104   4e-20
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   103   1e-19
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        99   2e-18

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  133 bits (335), Expect = 7e-29
 Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 6/238 (2%)
 Frame = +2

Query: 104  FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
            FW   +V+ LP   ++  E++   FL +G + N +K   I+W + C+ KEEGG+ ++ +K
Sbjct: 971  FWL--SVFRLPKACLQEIEKMFSAFLWSGPDLNTKK-AKIAWSEVCKLKEEGGLGLKPLK 1027

Query: 281  DMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSF-QPPGDASWVWRKLIKMRDKV 454
            + N  S+LKL+W ++S +D +WVKW     ++K+ FWS  +  G  SW+WRK++K RDK 
Sbjct: 1028 EANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKA 1087

Query: 455  RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGN 634
            R F  ++V +   T FW D W P G L   + S       IP   TV E++   R ++  
Sbjct: 1088 RLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHR 1147

Query: 635  IHNGILH*ILGDLGKVLRLHSSNEDKVMW*AFPN---RNFSSSSAWELIRSKSI*WDW 799
                 L+ I   +    +  S++ D+ +W    +    +FSSS  W+ IRS S+  DW
Sbjct: 1148 A--DFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDW 1203


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  129 bits (325), Expect = 1e-27
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 7/234 (2%)
 Frame = +2

Query: 104 FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
           FW   + + LP   ++    I   FL +G E ++RK   +SWDD C+ K+EGG+ +R + 
Sbjct: 229 FWM--SAFRLPSACLKEINSICSAFLWSGPELHRRK-AKVSWDDICKPKQEGGLGLRSLT 285

Query: 281 DMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKV 454
           + N  S+LKL+W V S  D +WVKW+++  LK++ FWS  P     SW+W+K++K R+  
Sbjct: 286 EANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETA 345

Query: 455 RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGN 634
           + F+ V+V N  +T FW D W   G L ++     +    I   KTV E   N R RK  
Sbjct: 346 KPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHR 405

Query: 635 IHNGILH*ILGDLGKVLRLHS-SNEDKVMW*AFPN---RNFSSSSAWELIRSKS 784
                L+ I   L +  +  +   ED  +W    +    +FS+   W  +R KS
Sbjct: 406 TEQ--LNDIEAALNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKS 457


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  124 bits (310), Expect = 5e-26
 Identities = 78/246 (31%), Positives = 125/246 (50%), Gaps = 7/246 (2%)
 Frame = +2

Query: 83   YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 259
            +++C   FW   A + LP + IR  +++  +FL +G E +  K   ISWD  C+ K EGG
Sbjct: 466  WSICN--FWL--AAFRLPRQCIREIDKLCSSFLWSGSEMSSHK-AKISWDIVCKPKAEGG 520

Query: 260  IDIRKIKDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSF-QPPGDASWVWRKL 433
            + +R +K+ N  S LKL+W ++S  + +W KW     ++K   WS  Q     SW+WRK+
Sbjct: 521  LGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKI 580

Query: 434  IKMRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGN 613
            +K+RD  ++F+ V+VGN     FW D W   G L + +         IP E +V +    
Sbjct: 581  LKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTR 640

Query: 614  ARWRKGNIHNGILH*ILGDLGKVLRLHSSN-EDKVMW*AFPN---RNFSSSSAWELIRSK 781
               R+   H   L   + ++    R+H S+ ED V+W    +    +FS+   W LI++ 
Sbjct: 641  RSRRR---HRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKAT 697

Query: 782  SI*WDW 799
            S    W
Sbjct: 698  SSTVSW 703


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score =  121 bits (304), Expect = 3e-25
 Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 3/178 (1%)
 Frame = +2

Query: 104  FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
            FW   + + LP   ++    I   FL +G E N+RK   +SWDD C+ K+ GG+ +R + 
Sbjct: 741  FWM--SAFRLPSACLKEINSICSAFLWSGPELNRRK-AKVSWDDICKPKQ-GGLGLRSLT 796

Query: 281  DMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKV 454
            + N  S+LKL+W V S  D +WVKW+++  LK++ FWS +P     SW+W+K++K R+  
Sbjct: 797  EANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKKMLKYRETA 856

Query: 455  RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRK 628
            + F+ V+V N  +T FW D W   G L ++     +    I   KTV E   N R RK
Sbjct: 857  KPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRK 914


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  120 bits (300), Expect = 8e-25
 Identities = 81/245 (33%), Positives = 114/245 (46%), Gaps = 6/245 (2%)
 Frame = +2

Query: 83   YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 259
            +++C   FW   A + LP + IR  E++   FL +G E N  K   ISW   C+ K+EGG
Sbjct: 819  WSICN--FWL--AAFRLPRKCIRELEKMCSAFLWSGTEMNSNK-AKISWHMVCKPKDEGG 873

Query: 260  IDIRKIKDMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFWSF-QPPGDASWVWRKL 433
            + +R +K+ N    LKL+W +VS    +WVKW     L+   FW   Q     SW+W+KL
Sbjct: 874  LGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKL 933

Query: 434  IKMRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGN 613
            +K R+  +  + V+VGN  +T FW D W   G L             I    TV E   N
Sbjct: 934  LKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTN 993

Query: 614  ARWRKGNIHNGILH*ILGDLGKVLRLHSSNEDKVMW*AFPN---RNFSSSSAWELIRSKS 784
             R R+    N + + I   L K     +  EDKV+W    +     FS+   W   RS S
Sbjct: 994  RRQRRH--RNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTS 1051

Query: 785  I*WDW 799
                W
Sbjct: 1052 ARVPW 1056


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  119 bits (299), Expect = 1e-24
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 11/238 (4%)
 Frame = +2

Query: 104  FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
            FW     + LP E I    +I    L +G E N +K   +SWD+ C+ K+EGG+ ++ ++
Sbjct: 545  FWM--NAFRLPRECINEINRISSALLWSGPELNPKK-AKVSWDEICKPKKEGGLGLQSLR 601

Query: 281  DMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKV 454
            + N  S LKL+W ++S +D +WVKW R+  LKK+ FWS        SW+WR+L+K R+  
Sbjct: 602  EANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVA 661

Query: 455  RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGN 634
            ++F  ++V N + T FW D W   G L NL  +       I    T+ E     R ++  
Sbjct: 662  KSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHR 721

Query: 635  IHNGILH*ILGDLGKVL-----RLHSSNEDKVMW*AFPN---RNFSSSSAWELIRSKS 784
            +       IL +  ++L       +   ED ++W    +     FS+   W  IR+ S
Sbjct: 722  VE------ILNEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSS 773


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  118 bits (295), Expect = 3e-24
 Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
 Frame = +2

Query: 122  VYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASI 301
            V  LPV T    ++  RNFL G + N RKL  ++W + C+ + EGG+ +R  +D N A +
Sbjct: 811  VMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFL 870

Query: 302  LKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGDASWVWRKLIKMRDKVRNFTSVQV 478
             K+ W + S  D +WVK  R  Y+K   F   Q   + SW WR ++K +D +       V
Sbjct: 871  TKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNV 930

Query: 479  GN*MKTKFWTDLWHPDGVLANLIES-HSRWLTSIPTEKTVTEILGNARWRKGNIHNGILH 655
            GN  K  FW D W  DG LA+  +  +   +T I  E  +T      RW  G +HN IL 
Sbjct: 931  GNGRKINFWNDWWVGDGPLASNTDCINQPHMTDIKVEDLIT---SQRRWDTGALHN-ILP 986

Query: 656  *ILGDLGKV--LRLHSSNEDKVMW*AFPNRNFSSSSAWELIR-----SKSI*WDW 799
              + D+ +   + ++S  ED + W        + SSA+ LI       +S  W W
Sbjct: 987  TNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDGDDRSHDWIW 1041


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  118 bits (295), Expect = 3e-24
 Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
 Frame = +2

Query: 122  VYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASI 301
            V  LPV T    ++  RNFL G + N RKL  ++W + C+ + EGG+ +R  +D N A +
Sbjct: 811  VMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFL 870

Query: 302  LKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGDASWVWRKLIKMRDKVRNFTSVQV 478
             K+ W + S  D +WVK  R  Y+K   F   Q   + SW WR ++K +D +       V
Sbjct: 871  TKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNV 930

Query: 479  GN*MKTKFWTDLWHPDGVLANLIES-HSRWLTSIPTEKTVTEILGNARWRKGNIHNGILH 655
            GN  K  FW D W  DG LA+  +  +   +T I  E  +T      RW  G +HN IL 
Sbjct: 931  GNGRKINFWNDWWVGDGPLASNTDCINQPHMTDIKVEDLIT---SQRRWDTGALHN-ILP 986

Query: 656  *ILGDLGKV--LRLHSSNEDKVMW*AFPNRNFSSSSAWELIR-----SKSI*WDW 799
              + D+ +   + ++S  ED + W        + SSA+ LI       +S  W W
Sbjct: 987  TNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDGDDRSHDWIW 1041


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  117 bits (294), Expect = 4e-24
 Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
 Frame = +2

Query: 83  YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGI 262
           +++C   FW   + + LP E +R  +++   FL    +       I+W+  CR K EGG+
Sbjct: 337 WSICN--FWL--SAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGL 392

Query: 263 DIRKIKDMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFWSFQPPGDASWVWRKLIK 439
            ++ IK+ N    LKL+W +VS G  +WV+W R   LK++ FWSF+     SW+W+KL+K
Sbjct: 393 GLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLK 452

Query: 440 MRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNAR 619
            RD  + F+ V + N     FW D W   G L +++    ++   I   KT+ E     R
Sbjct: 453 YRDTAKAFSKVDIRNGETASFWYDDWSSKGRLIDVLGERGQFDMGISKFKTLAEAWDRRR 512

Query: 620 WR 625
            R
Sbjct: 513 SR 514


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score =  115 bits (289), Expect = 1e-23
 Identities = 77/235 (32%), Positives = 112/235 (47%), Gaps = 9/235 (3%)
 Frame = +2

Query: 122  VYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKDMNYASI 301
            V  LPV T    ++  RNFL G + N RKL  ++W + C+ + EGG+ +R  +D N A +
Sbjct: 1343 VMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFL 1402

Query: 302  LKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGDASWVWRKLIKMRDKVRNFTSVQV 478
             K+ W + S  D +WVK  R  Y+K   F   Q   + SW WR ++K +D +       V
Sbjct: 1403 TKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNV 1462

Query: 479  GN*MKTKFWTDLWHPDGVLANLIES-HSRWLTSIPTEKTVTEILGNARWRKGNIHNGILH 655
            GN  K  FW D W  DG LA+  +  +   +T I  E   T      RW  G +HN IL 
Sbjct: 1463 GNGRKINFWNDWWVGDGPLASNTDCINQPHMTDIKVEDLTT---SQRRWDTGALHN-ILP 1518

Query: 656  *ILGDLGKV--LRLHSSNEDKVMW*AFPNRNFSSSSAWELIR-----SKSI*WDW 799
              + D+ +   + ++S  ED   W        + SSA+ LI       +S  W W
Sbjct: 1519 INMIDMVRATPIAINSEQEDFPSWPHSTTGMVTVSSAYSLIAGHDGDGRSHDWIW 1573


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score =  115 bits (287), Expect = 2e-23
 Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 3/185 (1%)
 Frame = +2

Query: 83   YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 259
            +++C   FW     + LP E IR  +++  +FL +G + N RK   +SWDD C+ K+EGG
Sbjct: 776  WSICN--FWL--FAFRLPRECIRDIDKLCSSFLWSGQDLNPRK-AKVSWDDVCKPKKEGG 830

Query: 260  IDIRKIKDMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKL 433
            + +R +K+ N    LK++W +VS G  +WVKW     LK + FW  +      SW+WRKL
Sbjct: 831  LGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFVKENTTLGSWMWRKL 890

Query: 434  IKMRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGN 613
            IK R+K +NF  V+V     T FW D W   G +   +         I  + TV E    
Sbjct: 891  IKFREKAKNFCKVEVNKGNCTSFWYDDWSNMGQMVEKVGDRGMIDMGIQRQMTVVEAWDK 950

Query: 614  ARWRK 628
             R R+
Sbjct: 951  RRRRR 955


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  114 bits (285), Expect = 4e-23
 Identities = 81/244 (33%), Positives = 118/244 (48%), Gaps = 10/244 (4%)
 Frame = +2

Query: 83  YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 259
           +++C   FW     + LP + IR  +++   +L +G E N  K   I+W   C+ KEEGG
Sbjct: 149 WSICN--FWM--GAFRLPRDCIREIDKMCSAYLWSGGELNTSK-AKIAWAFVCKPKEEGG 203

Query: 260 IDIRKIKDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKL 433
           + +R +K+ N    LKL+W ++S  D +WVKW +   LKK +FW+ +      SW+WRK+
Sbjct: 204 LGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKI 263

Query: 434 IKMRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGN 613
           +K RD  R    V++ N  +T FW D W   G L             I    TV E  GN
Sbjct: 264 LKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRLIESAGDRGAIDLGINKHATVVEAWGN 323

Query: 614 ARWR--KGNIHNGILH*ILGDLGKVLRLHSSN--EDKVMW*AFPNR---NFSSSSAWELI 772
            R R  + N  N +      +   VL  +S N  ED  +W    NR    FS+   W  I
Sbjct: 324 RRRRRHRANFLNRV------EERLVLSWNSRNQAEDCALWKGKENRFRSIFSTKDTWNHI 377

Query: 773 RSKS 784
           R+ S
Sbjct: 378 RTVS 381


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score =  114 bits (284), Expect = 5e-23
 Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 10/244 (4%)
 Frame = +2

Query: 83  YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 259
           +++C   FW     + LP + IR  +++   +L +G E N  K   I+W   C+ KEEGG
Sbjct: 68  WSICN--FWM--GAFRLPRDCIREIDKMCSAYLWSGGELNTSK-AKITWAFVCKPKEEGG 122

Query: 260 IDIRKIKDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKL 433
           + +R +K+ N    LKL+W ++S  D +WVKW +   LKK  FW+ +      SW+WRK+
Sbjct: 123 LGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKI 182

Query: 434 IKMRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGN 613
           +K RD  R    V++ N  +T FW D W   G L +           I    TV E  GN
Sbjct: 183 LKFRDIARTLCKVEINNGARTSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVVEAWGN 242

Query: 614 ARWR--KGNIHNGILH*ILGDLGKVLRLHSSN--EDKVMW*AFPNR---NFSSSSAWELI 772
            R R  + N  N +      +   +L  +S N  ED+ +W    NR    FS+   W  I
Sbjct: 243 RRRRRHRTNFLNRV------EERLILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHI 296

Query: 773 RSKS 784
           R+ S
Sbjct: 297 RTVS 300


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  112 bits (279), Expect = 2e-22
 Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 7/239 (2%)
 Frame = +2

Query: 104 FWR*EAVYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIKD 283
           FW   + + LP   I+  + +   FL    +  RK   +SW+D C  KEEGG+ +R + +
Sbjct: 44  FWM--SAFRLPNACIKEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTE 101

Query: 284 MNYASILKLLWWVVSGKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVRN 460
            N    LKL+W ++S   +WV+W R   ++K  FWS +      SW+WRKL+K R     
Sbjct: 102 ANKVCCLKLIWRLLSSSSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASG 161

Query: 461 FTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGNIH 640
           FT  ++ N     FW D W P G L  +  +       I    TV E L + R R    H
Sbjct: 162 FTQYEIRNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADH 221

Query: 641 NGILH*ILGDL---GKVLRLHSSNEDKVMW*AFPNR---NFSSSSAWELIRSKSI*WDW 799
              +   L +L   G V       ED V+W     R   +FS+   W   R +    +W
Sbjct: 222 LNQMEAQLEELRTKGLV-----ETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEW 275


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  109 bits (272), Expect = 1e-21
 Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 4/210 (1%)
 Frame = +2

Query: 104 FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
           FW   + + LP   I+  + I  +FL +G E N +K   ++W D C  K+EGG+ IR +K
Sbjct: 80  FWM--SAFRLPSACIKEIDSICSSFLWSGPELNTKK-AKVAWSDVCTPKDEGGLGIRSLK 136

Query: 281 DMNYASILKLLWWVVSGKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKVR 457
           + N  S+LKL+W ++S   +WV+W RL  L+K  FWS        SW+W+K++K R    
Sbjct: 137 EANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALAS 196

Query: 458 NFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGNI 637
            F    + N   T FW D W   G L ++          I    +V E + N R R+ + 
Sbjct: 197 GFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRR-HR 255

Query: 638 HNGILH*ILGDLGKVLRLH--SSNEDKVMW 721
           H+ +L   + D+   +R    +S ED V W
Sbjct: 256 HDTLLR--IEDVIAEVRHQGLTSGEDTVRW 283


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  104 bits (260), Expect = 3e-20
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%)
 Frame = +2

Query: 104  FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
            FW   + Y LP   I+  E++   FL +G E N +K   I+W   C+ K+EGG+ I+ + 
Sbjct: 397  FWM--SAYRLPAGCIKEIEKLCSAFLWSGPELNPKK-AKITWTSLCKLKQEGGLGIKSLL 453

Query: 281  DMNYASILKLLWWVVSGK-DIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKV 454
            + N  S LKL+W +VS +  +WV W     ++K  FWS        SW+W+KL+K RD  
Sbjct: 454  EANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVA 513

Query: 455  RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGN 634
            ++   V++ +   T FW D W   G L ++  +       IP   TV  +L + R +  +
Sbjct: 514  KSMCKVEIKSGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVATVLASHRTK--H 571

Query: 635  IHNGILH*ILGDLGKVL-RLHSSNEDKVMW*AFPN---RNFSSSSAWELIR 775
                I + I  ++  +L R  S   D  +W +  +   ++F +   W  IR
Sbjct: 572  HRTAIYNKIEAEIQSILQRERSGAPDIFLWRSSGDNFRQSFITKVTWHNIR 622


>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
          Length = 438

 Score =  104 bits (259), Expect = 4e-20
 Identities = 73/244 (29%), Positives = 101/244 (41%), Gaps = 10/244 (4%)
 Frame = +2

Query: 98  IVFWR*EAVYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKI 277
           +VFW   + + LP   IR  E +   FL     ++     +SW   C  K EGG+ +RK 
Sbjct: 86  VVFWM--STFRLPKGCIREIESMCARFLWSGGTDEHHKAKVSWSTVCLPKAEGGLGVRKF 143

Query: 278 KDMNYASILKLLWWVVSGK-DIWVKWARLIYLKKDY--FWSFQPPGDASWVWRKLIKMRD 448
            + N A  LKL+W + S    +WV W     L      FW  +     SW WR L+++R 
Sbjct: 144 TEWNTALNLKLIWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRP 203

Query: 449 KVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARW-- 622
               F    +GN +   FW D W P G L   I S       IP    V +++   RW  
Sbjct: 204 LASKFLFCSIGNGLTASFWADSWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLL 263

Query: 623 ---RKGNIHNGILH*ILGDLGKVLRLHSSNEDKVMW*A--FPNRNFSSSSAWELIRSKSI 787
              R  N  N  LH  L  L   + L    ED  +W      +  FSS+  W  +R K +
Sbjct: 264 PSPRSSNALN--LHAFLTTLS--IPLQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEV 319

Query: 788 *WDW 799
              W
Sbjct: 320 EKPW 323


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  104 bits (259), Expect = 4e-20
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 12/239 (5%)
 Frame = +2

Query: 104  FWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGGIDIRKIK 280
            FW   + + LP   I+  E++  +FL +G   N +K   ISW+  C+ K EGG+ +R +K
Sbjct: 377  FWL--SAFQLPRACIQEIEKLCSSFLWSGTNLNSKK-AKISWNQVCKPKSEGGLGLRSLK 433

Query: 281  DMNYASILKLLWWVVS-GKDIWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKLIKMRDKV 454
            + N    LKL+W ++S G  +WVKW     LK++ FW  +   +  SW+W+K++K R   
Sbjct: 434  EANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVA 493

Query: 455  RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGN 634
            + F   +VGN   T FW D W   G L ++          I    +V +   + R R   
Sbjct: 494  KRFCKAEVGNGESTSFWFDDWSLLGRLIDVAGIRGTIDMGISRTMSVADAWTSRRRRHHR 553

Query: 635  IHNGILH*ILGDLGKVL------RLHSSNEDKVMW*A---FPNRNFSSSSAWELIRSKS 784
                    IL  + +VL      R     + +V+W          FS+ + W  +R+ S
Sbjct: 554  QE------ILNTIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTS 606


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  103 bits (256), Expect = 1e-19
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 3/185 (1%)
 Frame = +2

Query: 83  YTLCGIVFWR*EAVYGLPVETIRRAEQIMRNFL-AGVEQNKRKLVLISWDDTCRAKEEGG 259
           +++C   FW     + LP E IR  +++   +L +G + N  K   I+W D C+ K+EGG
Sbjct: 201 WSICN--FWM--GAFRLPRECIREIDKMCSAYLWSGGDLNTSK-AKIAWTDVCKPKDEGG 255

Query: 260 IDIRKIKDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGD-ASWVWRKL 433
           + +R +K+ N  S LKL+W ++S  D +WVKW     LK+  FW+ +      SW+W+K+
Sbjct: 256 LGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVRENTSLGSWMWKKV 315

Query: 434 IKMRDKVRNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGN 613
           +K RD        +V N   T FW D W   G L ++          I    T+ +  GN
Sbjct: 316 LKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRLIDIAGDRGVIDMGIKKHATMADAWGN 375

Query: 614 ARWRK 628
            R R+
Sbjct: 376 RRRRR 380


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 5/239 (2%)
 Frame = +2

Query: 98   IVFWR*EAVYGLPVETIRRAEQIMRNFLAGVEQNKRKLVLISWDDTCRAKEEGGIDIRKI 277
            I FW   + + LP   I+R E +   FL      + K + +SW   C  K EGG+ +R++
Sbjct: 815  INFWM--STFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRL 872

Query: 278  KDMNYASILKLLWWVVSGKD-IWVKWARLIYLKKDYFWSFQPPGDASWVWRKLIKMRDKV 454
             + N    ++L+W +   KD +W  W  L +L +  FW+ +     SW W++L+ +R   
Sbjct: 873  LEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLA 932

Query: 455  RNFTSVQVGN*MKTKFWTDLWHPDGVLANLIESHSRWLTSIPTEKTVTEILGNARWRKGN 634
              F   +VGN +K  +W D W   G L  +I         +P    V        WR   
Sbjct: 933  HQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPV 992

Query: 635  IHNGILH*ILGDLGKVLRLHSSNE--DKVMW--*AFPNRNFSSSSAWELIRSKSI*WDW 799
              +     I   L  V    ++ E  D+  W    F  + FS++  WE IR K+    W
Sbjct: 993  SRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSW 1051