BLASTX nr result
ID: Sinomenium21_contig00047835
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00047835
(348 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEP25262.1| chlorophyll-A binding protein P5 [Simmondsia chin... 55 6e-08
gb|AEN70642.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEN70639.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEN70637.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEN70636.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEN70631.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEN70627.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEN70620.1| photosystem II CP47 chlorophyll apoprotein, parti... 50 2e-06
gb|AEI70834.1| photosystem II-like protein [Helianthus annuus] 57 2e-06
gb|AEX98446.1| PSII 47 kDa protein (chloroplast) [Ginkgo biloba] 47 2e-06
gb|ADW82069.1| photosystem II CP47 protein [Phaeoceros carolinia... 50 2e-06
ref|YP_002519979.1| photosystem II 47 kDa protein (chloroplast) ... 49 5e-06
gb|ABV01106.1| photosystem II CP47 protein [Riccardia palmata] 49 5e-06
gb|ABV01105.1| photosystem II CP47 protein [Riccardia sp. Wicket... 49 5e-06
gb|AAG12359.1| photosystem II CP47 protein [Ephedra sinica] 49 5e-06
gb|ADW82065.1| photosystem II CP47 protein [Leiosporoceros dussii] 49 5e-06
gb|AAF72603.1| photosystem II apoprotein [Ephedra tweediana] 49 5e-06
gb|EXB38499.1| Photosystem II CP47 chlorophyll apoprotein [Morus... 56 6e-06
gb|AEW12989.1| photosystem II CP47 chlorophyll apoprotein (chlor... 45 6e-06
ref|YP_007317181.1| photosystem II 47 kDa protein (chloroplast) ... 45 6e-06
>gb|AEP25262.1| chlorophyll-A binding protein P5 [Simmondsia chinensis]
Length = 462
Score = 55.1 bits (131), Expect(2) = 6e-08
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G+E FDPFV GG+ASHHIA GT + + GLFHLSV PQ L K
Sbjct: 128 LTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGT----FGILAGLFHLSVRPPQRLYK 181
Score = 27.3 bits (59), Expect(2) = 6e-08
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 181 KGLRMGNIETVLSSSIAAVF 200
>gb|AEN70642.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Callitris canescens]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEN70639.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Callitris verrucosa]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGQIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEN70637.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Callitris preissii]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEN70636.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Callitris drummondii]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEN70631.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Neocallitropsis pancheri] gi|345103470|gb|AEN70638.1|
photosystem II CP47 chlorophyll apoprotein, partial
(chloroplast) [Callitris sulcata]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEN70627.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Actinostrobus pyramidalis] gi|345103462|gb|AEN70634.1|
photosystem II CP47 chlorophyll apoprotein, partial
(chloroplast) [Actinostrobus arenarius]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEN70620.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
[Callitris muelleri] gi|345103436|gb|AEN70621.1|
photosystem II CP47 chlorophyll apoprotein, partial
(chloroplast) [Callitris rhomboidea]
gi|345103450|gb|AEN70628.1| photosystem II CP47
chlorophyll apoprotein, partial (chloroplast) [Callitris
endlicheri] gi|345103452|gb|AEN70629.1| photosystem II
CP47 chlorophyll apoprotein, partial (chloroplast)
[Callitris macleayana]
Length = 448
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G L GLFHLSV PQ L K
Sbjct: 141 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGLLAGLFHLSVRPPQRLYK 194
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 194 KGLRMGNIETVLSSSIAAVF 213
>gb|AEI70834.1| photosystem II-like protein [Helianthus annuus]
Length = 470
Score = 57.4 bits (137), Expect = 2e-06
Identities = 28/46 (60%), Positives = 31/46 (67%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G+E FDPFV GG+ASHHIA W + GLFHLSVC PQ L K
Sbjct: 186 GVEGFDPFVPGGIASHHIA----AWTLGILAGLFHLSVCPPQRLYK 227
>gb|AEX98446.1| PSII 47 kDa protein (chloroplast) [Ginkgo biloba]
Length = 508
Score = 46.6 bits (109), Expect(2) = 2e-06
Identities = 29/58 (50%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 LT*LTRPIH-CMGIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
LT +P++ G E FDPFV GG+ASHHIA G + G FHLSV PQ L K
Sbjct: 174 LTGKIQPVNPAWGAEGFDPFVPGGIASHHIAAG----ILGILAGPFHLSVRPPQRLYK 227
Score = 30.4 bits (67), Expect(2) = 2e-06
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVFK*FSCEHCPLSNWLSLR 298
K L GNIET+LS +I AVF F HC ++ + LR
Sbjct: 227 KGLRMGNIETVLSSSIAAVF--FDSFHCRWNHVVWLR 261
>gb|ADW82069.1| photosystem II CP47 protein [Phaeoceros carolinianus]
Length = 497
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 27/46 (58%), Positives = 30/46 (65%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHHIA G ++ GLFHLSV PQ L K
Sbjct: 175 GAEGFDPFVSGGIASHHIAAG----ILGISAGLFHLSVRPPQRLYK 216
Score = 26.9 bits (58), Expect(2) = 2e-06
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GN+ET+LS +I AVF
Sbjct: 216 KGLRMGNVETVLSSSIAAVF 235
>ref|YP_002519979.1| photosystem II 47 kDa protein (chloroplast) [Ephedra equisetina]
gi|220983580|dbj|BAH11347.1| photosystem II 47 kDa
protein (chloroplast) [Ephedra equisetina]
Length = 508
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 26/46 (56%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHH+A G + GLFHLSV PQ L K
Sbjct: 186 GAEGFDPFVPGGIASHHVAAG----LLGIIAGLFHLSVRPPQRLYK 227
Score = 27.3 bits (59), Expect(2) = 5e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 227 KGLRMGNIETVLSSSIAAVF 246
>gb|ABV01106.1| photosystem II CP47 protein [Riccardia palmata]
Length = 505
Score = 48.9 bits (115), Expect(2) = 5e-06
Identities = 27/46 (58%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHHIA G + GLFHLSV PQ L K
Sbjct: 186 GAEGFDPFVPGGIASHHIAAGIS----GILAGLFHLSVRPPQRLYK 227
Score = 26.9 bits (58), Expect(2) = 5e-06
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GN+ET+LS +I AVF
Sbjct: 227 KGLRMGNVETVLSSSIAAVF 246
>gb|ABV01105.1| photosystem II CP47 protein [Riccardia sp. Wickett 280]
Length = 505
Score = 48.9 bits (115), Expect(2) = 5e-06
Identities = 27/46 (58%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHHIA G + GLFHLSV PQ L K
Sbjct: 186 GAEGFDPFVPGGIASHHIAAGIS----GILAGLFHLSVRPPQRLYK 227
Score = 26.9 bits (58), Expect(2) = 5e-06
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GN+ET+LS +I AVF
Sbjct: 227 KGLRMGNVETVLSSSIAAVF 246
>gb|AAG12359.1| photosystem II CP47 protein [Ephedra sinica]
Length = 498
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 26/46 (56%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHH+A G + GLFHLSV PQ L K
Sbjct: 176 GAEGFDPFVPGGIASHHVAAG----LLGIIAGLFHLSVRPPQRLYK 217
Score = 27.3 bits (59), Expect(2) = 5e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 217 KGLRMGNIETVLSSSIAAVF 236
>gb|ADW82065.1| photosystem II CP47 protein [Leiosporoceros dussii]
Length = 472
Score = 48.9 bits (115), Expect(2) = 5e-06
Identities = 27/46 (58%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHHIA G + GLFHLSV PQ L K
Sbjct: 150 GAEGFDPFVPGGIASHHIAAGIS----GILAGLFHLSVRPPQRLYK 191
Score = 26.9 bits (58), Expect(2) = 5e-06
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GN+ET+LS +I AVF
Sbjct: 191 KGLRMGNVETVLSSSIAAVF 210
>gb|AAF72603.1| photosystem II apoprotein [Ephedra tweediana]
Length = 462
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 26/46 (56%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDPFV GG+ASHH+A G + GLFHLSV PQ L K
Sbjct: 177 GAEGFDPFVPGGIASHHVAAG----LLGIIAGLFHLSVRPPQRLYK 218
Score = 27.3 bits (59), Expect(2) = 5e-06
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K L GNIET+LS +I AVF
Sbjct: 218 KGLRMGNIETVLSSSIAAVF 237
>gb|EXB38499.1| Photosystem II CP47 chlorophyll apoprotein [Morus notabilis]
Length = 456
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/46 (60%), Positives = 31/46 (67%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G+E FDPFV GG+ASHHI GT + GLFHLSVC PQ L K
Sbjct: 134 GVEGFDPFVPGGIASHHITAGT----LGILAGLFHLSVCPPQRLYK 175
>gb|AEW12989.1| photosystem II CP47 chlorophyll apoprotein (chloroplast)
[Strombomonas acuminata]
Length = 516
Score = 45.4 bits (106), Expect(2) = 6e-06
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDP+ +GG+ASHHIA G + GLFHL+V PQ L K
Sbjct: 193 GAEGFDPYNVGGIASHHIAAG----ILGIIAGLFHLTVRPPQRLYK 234
Score = 30.0 bits (66), Expect(2) = 6e-06
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K+L GNIET+LS +I AVF
Sbjct: 234 KVLRMGNIETVLSSSIAAVF 253
>ref|YP_007317181.1| photosystem II 47 kDa protein (chloroplast) [Monomorphina
aenigmatica] gi|429484613|gb|AFZ88783.1| photosystem II
47 kDa protein (chloroplast) [Monomorphina aenigmatica]
Length = 508
Score = 45.4 bits (106), Expect(2) = 6e-06
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +3
Query: 54 GIEYFDPFVLGGMASHHIAVGTRTWAYWLALGLFHLSVCLPQHLIK 191
G E FDP+ +GG+ASHHIA G + GLFHL+V PQ L K
Sbjct: 186 GAEGFDPYNVGGIASHHIAAG----ILGIIAGLFHLTVRPPQRLYK 227
Score = 30.0 bits (66), Expect(2) = 6e-06
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 188 KILHTGNIETILSRNITAVF 247
K+L GNIET+LS +I AVF
Sbjct: 227 KVLRMGNIETVLSSSIAAVF 246