BLASTX nr result
ID: Sinomenium21_contig00047526
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00047526
(425 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca... 115 7e-34
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 111 7e-33
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 108 4e-32
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 108 4e-32
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 109 2e-31
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 109 2e-31
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun... 101 2e-30
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 102 6e-30
ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phas... 100 3e-29
gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza] 107 5e-29
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 98 1e-28
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 100 1e-28
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 96 2e-28
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 96 2e-28
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L... 96 3e-28
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 97 4e-28
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 99 4e-28
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 96 8e-28
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 99 4e-27
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 93 5e-27
>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
6 [Theobroma cacao]
Length = 1197
Score = 115 bits (287), Expect(2) = 7e-34
Identities = 53/98 (54%), Positives = 73/98 (74%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y++ + RH +L+KA+DYL++Q++P D++ L + DEP D+G +S+PF+CI KEG
Sbjct: 270 YRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRISDEP--DFGRSMSDPFYCIDYKEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I FEIMFLVNAVMHKGI + H LSE+FF LLR RE+
Sbjct: 328 IPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREV 365
Score = 54.7 bits (130), Expect(2) = 7e-34
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+YSYRRPVFD ++LK V +WLL+NP
Sbjct: 366 NVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNP 398
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 111 bits (277), Expect(2) = 7e-33
Identities = 48/98 (48%), Positives = 76/98 (77%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y++S+ RH +L KA+D+LK++++ ++L + + +RDEP D+GM +++PFFCI KEG
Sbjct: 270 YRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEP--DFGMPMTDPFFCIHHKEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I+F+++FLVNAVMHKGI + H LS +FF+LLR+ E+
Sbjct: 328 IAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEV 365
Score = 55.1 bits (131), Expect(2) = 7e-33
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+Y YRRPVFD +KLK QEWLL+NP
Sbjct: 366 NVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNP 398
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 108 bits (270), Expect(2) = 4e-32
Identities = 51/98 (52%), Positives = 75/98 (76%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+S+RH +L K + YL ++++ D L + + +R+EP D+ + +S+PFFCI +EG
Sbjct: 270 YRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP--DFEVPMSDPFFCIHYEEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
ISFEIMFLVNAVMHKGI++ H LS+ FF+LLR +RE+
Sbjct: 328 ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365
Score = 55.5 bits (132), Expect(2) = 4e-32
Identities = 22/33 (66%), Positives = 30/33 (90%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+YSY+ PVFD C++LK VQEWLL++P
Sbjct: 366 NVAALKHIYSYKWPVFDACKRLKLVQEWLLKDP 398
>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
sinensis]
Length = 1025
Score = 108 bits (270), Expect(2) = 4e-32
Identities = 51/98 (52%), Positives = 75/98 (76%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+S+RH +L K + YL ++++ D L + + +R+EP D+ + +S+PFFCI +EG
Sbjct: 270 YRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP--DFEVPMSDPFFCIHYEEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
ISFEIMFLVNAVMHKGI++ H LS+ FF+LLR +RE+
Sbjct: 328 ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365
Score = 55.5 bits (132), Expect(2) = 4e-32
Identities = 22/33 (66%), Positives = 30/33 (90%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+YSY+ PVFD C++LK VQEWLL++P
Sbjct: 366 NVAALKHIYSYKWPVFDACKRLKLVQEWLLKDP 398
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 109 bits (273), Expect(2) = 2e-31
Identities = 54/100 (54%), Positives = 77/100 (77%), Gaps = 2/100 (2%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIP--NDFLEKQLMVRDEPEPDYGMRISNPFFCIQCK 251
Y+IS+ R+ +L+KAMDYL+ +++ D + QL VRDEP D+G+ +S+PFFCIQ K
Sbjct: 270 YRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEP--DFGLPMSDPFFCIQHK 327
Query: 250 EGISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
EGI F +MFLVNAVMHKGI++ H LS++FF+LLRS +++
Sbjct: 328 EGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI 367
Score = 51.6 bits (122), Expect(2) = 2e-31
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSLSS 15
NIAAL+H+ SYR PVFD ++LK V +WLL+NP L S
Sbjct: 368 NIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKS 405
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 109 bits (273), Expect(2) = 2e-31
Identities = 54/100 (54%), Positives = 77/100 (77%), Gaps = 2/100 (2%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIP--NDFLEKQLMVRDEPEPDYGMRISNPFFCIQCK 251
Y+IS+ R+ +L+KAMDYL+ +++ D + QL VRDEP D+G+ +S+PFFCIQ K
Sbjct: 108 YRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEP--DFGLPMSDPFFCIQHK 165
Query: 250 EGISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
EGI F +MFLVNAVMHKGI++ H LS++FF+LLRS +++
Sbjct: 166 EGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI 205
Score = 51.6 bits (122), Expect(2) = 2e-31
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSLSS 15
NIAAL+H+ SYR PVFD ++LK V +WLL+NP L S
Sbjct: 206 NIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKS 243
>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
gi|462422376|gb|EMJ26639.1| hypothetical protein
PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 101 bits (252), Expect(2) = 2e-30
Identities = 49/98 (50%), Positives = 71/98 (72%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y++ + RH +L+KAM+YL+++++ ++ ++DEP D+GM + PFF IQ +EG
Sbjct: 269 YRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQDEP--DFGMSNTEPFFSIQYEEG 326
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
ISFEIMFLVNAVMHKG V+ H LS+ FF LLRS +E+
Sbjct: 327 ISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEI 364
Score = 56.6 bits (135), Expect(2) = 2e-30
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+ SYR PVFD CE+LK VQ+WLL+NP
Sbjct: 365 NVAALKHLCSYRSPVFDACERLKVVQDWLLKNP 397
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 102 bits (254), Expect(2) = 6e-30
Identities = 51/98 (52%), Positives = 73/98 (74%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y++ + RH L+L+KAMDYL+++++P + L QL +RDEP D+G +S+ F+ I KEG
Sbjct: 270 YRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRDEP--DFGRSMSDHFYYIY-KEG 326
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I FEIMFLVNAV+HKGI + H LS +FF LLR+ + E+
Sbjct: 327 IPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEV 364
Score = 54.3 bits (129), Expect(2) = 6e-30
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSLSS 15
N+AAL+H+YSYR PV+D E+LK V +WLL+NP S
Sbjct: 365 NVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKS 402
>ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
gi|561010117|gb|ESW09024.1| hypothetical protein
PHAVU_009G093700g [Phaseolus vulgaris]
Length = 1204
Score = 100 bits (250), Expect(2) = 3e-29
Identities = 51/98 (52%), Positives = 68/98 (69%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
YKIS+ RH +L KAM YLK Q++ L + +R EPD+G +SNPFF I + G
Sbjct: 270 YKISIPPRHGAKLMKAMLYLKGQRVQMQELPLKQTLRALNEPDFGTPMSNPFFYIDYQVG 329
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I+F+IMFLVNA++HKGI + H LS+ FFELLR+ +EL
Sbjct: 330 ITFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKEL 367
Score = 53.5 bits (127), Expect(2) = 3e-29
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+ SY+RPVFD ++LK VQEWLL+NP
Sbjct: 368 NVAALKHLCSYKRPVFDATKRLKVVQEWLLRNP 400
>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
Length = 1195
Score = 107 bits (267), Expect(2) = 5e-29
Identities = 47/98 (47%), Positives = 75/98 (76%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+ RH +LEKA+ YL+++++P + Q +R + EPD+G+ +++PFFC Q KEG
Sbjct: 268 YRISVRPRHLSQLEKALGYLQNRRVPVENGSPQERLRVQDEPDFGVPMADPFFCFQYKEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
++F++MF+VNAV+HKGI++ H S++FF+LLRS EL
Sbjct: 328 LNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQPEEL 365
Score = 46.2 bits (108), Expect(2) = 5e-29
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSL 21
N+ AL+H+YSY+RPV+D L V +WL++NP L
Sbjct: 366 NLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLL 401
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 97.8 bits (242), Expect(2) = 1e-28
Identities = 45/94 (47%), Positives = 66/94 (70%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+ R+ L+KAM+Y ++ ++P + M+R EPD+G+ +S PFFC Q EG
Sbjct: 269 YRISIRPRNGPSLKKAMNYFRESRVPVVEQGNRQMLRVRDEPDFGVSLSEPFFCFQNHEG 328
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSH 143
ISF+++FLVNAV+ KGIV+ H ++ EFF LLR H
Sbjct: 329 ISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLRKH 362
Score = 54.7 bits (130), Expect(2) = 1e-28
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = -1
Query: 164 F*VTKKPYEGVENIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSL 21
F + +K EGV N+AAL+H++SY+RPV D +KL VQ+WL +NPN L
Sbjct: 356 FSLLRKHQEGV-NLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLL 402
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 100 bits (248), Expect(2) = 1e-28
Identities = 48/101 (47%), Positives = 73/101 (72%), Gaps = 3/101 (2%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIP---NDFLEKQLMVRDEPEPDYGMRISNPFFCIQC 254
Y++S+ RH +L KA+ YLK++++ + +++ + DEP D+GM +S+PFFCI
Sbjct: 270 YRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRILDEP--DFGMPMSDPFFCIHH 327
Query: 253 KEGISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
KEGI+FE++FLVNAVMHKGI + H LS +FF+LLR+ E+
Sbjct: 328 KEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV 368
Score = 52.0 bits (123), Expect(2) = 1e-28
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPN 27
N++AL+H+ +YRRPVF+ +LK VQEWLL+NPN
Sbjct: 369 NVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPN 402
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 96.3 bits (238), Expect(2) = 2e-28
Identities = 44/98 (44%), Positives = 72/98 (73%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
+++S+ R+ ++L AM+YLK+Q++ L + + +EP DYG+++++ FFCI K+
Sbjct: 269 FRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEP--DYGVQMTDHFFCILYKKD 326
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
ISFEI+FLVNAVMHKGI++ H +S+ FF+LLR+ E+
Sbjct: 327 ISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEV 364
Score = 55.1 bits (131), Expect(2) = 2e-28
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSL 21
N+AAL H++++RRPV D C+KLK VQEWLL+NP L
Sbjct: 365 NLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLL 400
>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 96.3 bits (238), Expect(2) = 2e-28
Identities = 44/98 (44%), Positives = 72/98 (73%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
+++S+ R+ ++L AM+YLK+Q++ L + + +EP DYG+++++ FFCI K+
Sbjct: 269 FRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEP--DYGVQMTDHFFCILYKKD 326
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
ISFEI+FLVNAVMHKGI++ H +S+ FF+LLR+ E+
Sbjct: 327 ISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEV 364
Score = 55.1 bits (131), Expect(2) = 2e-28
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSL 21
N+AAL H++++RRPV D C+KLK VQEWLL+NP L
Sbjct: 365 NLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLL 400
>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
Length = 1201
Score = 95.9 bits (237), Expect(2) = 3e-28
Identities = 47/98 (47%), Positives = 73/98 (74%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+ RH +L KAM YL Q++ L++ L ++DEP ++G+ +S+ FF I C+EG
Sbjct: 270 YRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLRIQDEP--NFGVPMSDDFFYIHCQEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I+F+IMFLVNAV+HKGI++ + LS+ FFE+LR+ +E+
Sbjct: 328 ITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQEV 365
Score = 55.1 bits (131), Expect(2) = 3e-28
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSLSSVRSS 3
N+AAL+H+ SY+RPVFD ++LK VQEWLL+NP S + +
Sbjct: 366 NVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQA 407
>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
max] gi|571449461|ref|XP_006578148.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
max]
Length = 1204
Score = 97.1 bits (240), Expect(2) = 4e-28
Identities = 47/98 (47%), Positives = 69/98 (70%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+ RH +L KAM YLK Q++ L + +R + EPD+GM +S+ FF + ++
Sbjct: 270 YRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQTLRTQNEPDFGMPMSDAFFYVHFQKD 329
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I+F+IMFLVNA++HKGI + H LS+ FFELLR+ +EL
Sbjct: 330 IAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKEL 367
Score = 53.5 bits (127), Expect(2) = 4e-28
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+ SY+RPVFD ++LK VQEWLL+NP
Sbjct: 368 NVAALKHLCSYKRPVFDATKRLKIVQEWLLRNP 400
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA
polymerase, putative [Ricinus communis]
Length = 1203
Score = 99.0 bits (245), Expect(2) = 4e-28
Identities = 45/93 (48%), Positives = 69/93 (74%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y++S+ RH +L++A+++L+++++ D L + L V EPE Y M +S+PFFCI +EG
Sbjct: 270 YRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPE--YEMPMSDPFFCIHHEEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRS 146
+ F +MFLVNAVMHKGI + H LS+ FF+LLR+
Sbjct: 328 VDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360
Score = 51.6 bits (122), Expect(2) = 4e-28
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSLSS 15
NIAALRH+ SY+ PVFD ++LK VQ+WLL+NP S
Sbjct: 366 NIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRS 403
>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
6 [Solanum lycopersicum]
Length = 1197
Score = 95.9 bits (237), Expect(2) = 8e-28
Identities = 45/94 (47%), Positives = 66/94 (70%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y++S+ R+ +KAM+Y ++ ++P +Q M+R EPD+G +S PFFC Q EG
Sbjct: 269 YRVSIRPRNGPSFKKAMNYFRESRVPVVEQGEQ-MLRVRNEPDFGESVSEPFFCFQNHEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSH 143
ISF+++FLVNAV+HKGIV+ H ++ EFF LLR H
Sbjct: 328 ISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKH 361
Score = 53.5 bits (127), Expect(2) = 8e-28
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = -1
Query: 164 F*VTKKPYEGVENIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSL 21
F + +K EGV N+AAL+H++SY+RPV D KL VQ+WL NPN L
Sbjct: 355 FSLLRKHQEGV-NLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLL 401
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 99.4 bits (246), Expect(2) = 4e-27
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+ R+ EKAM Y ++P + + M+R EPD+G+ +S+PFFC Q EG
Sbjct: 269 YRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-NEG 327
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
ISF++MFLVNAV+HKGIV+ H ++ EFF LLRSH E+
Sbjct: 328 ISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEV 365
Score = 47.8 bits (112), Expect(2) = 4e-27
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNPNSL 21
N+AAL+HM+SY+ PV D +KL +Q+WLL+NP L
Sbjct: 366 NLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLL 401
>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
max] gi|571459266|ref|XP_006581359.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
max]
Length = 1204
Score = 93.2 bits (230), Expect(2) = 5e-27
Identities = 46/98 (46%), Positives = 68/98 (69%)
Frame = -2
Query: 424 YKISMSARHWLRLEKAMDYLKDQQIPNDFLEKQLMVRDEPEPDYGMRISNPFFCIQCKEG 245
Y+IS+ RH +L KAM YLK Q++ L + +R EPD+G+ +S+ FF I ++
Sbjct: 270 YRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQTLRTLNEPDFGVPMSDAFFYIHFQKD 329
Query: 244 ISFEIMFLVNAVMHKGIVSHHHLSEEFFELLRSHTREL 131
I+F+IMFLVNA++HKGI + H LS+ FFELL++ +EL
Sbjct: 330 IAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQPKEL 367
Score = 53.5 bits (127), Expect(2) = 5e-27
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -1
Query: 128 NIAALRHMYSYRRPVFDVCEKLKHVQEWLLQNP 30
N+AAL+H+ SY+RPVFD ++LK VQEWLL+NP
Sbjct: 368 NVAALKHLCSYKRPVFDATKRLKIVQEWLLRNP 400