BLASTX nr result

ID: Sinomenium21_contig00046127 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00046127
         (340 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002891104.1| hypothetical protein ARALYDRAFT_336508 [Arab...    48   6e-06
ref|XP_006408860.1| hypothetical protein EUTSA_v10002189mg, part...    50   8e-06

>ref|XP_002891104.1| hypothetical protein ARALYDRAFT_336508 [Arabidopsis lyrata subsp.
           lyrata] gi|297336946|gb|EFH67363.1| hypothetical protein
           ARALYDRAFT_336508 [Arabidopsis lyrata subsp. lyrata]
          Length = 206

 Score = 47.8 bits (112), Expect(2) = 6e-06
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = -1

Query: 280 VLLILFSNFDISLEGPHL*EALEIQVQIQGAPLLSSILITTLHYQI 143
           V + LF NF+++LE PH+ + ++IQ+QI GAP + +    TLH+Q+
Sbjct: 109 VFVTLFPNFNVALEDPHVYQNMQIQLQITGAPQIGNTYAATLHHQM 154



 Score = 27.7 bits (60), Expect(2) = 6e-06
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 326 YQHEIIGTLQTTLNASSPY 270
           YQH  I T+QTTLNA + +
Sbjct: 92  YQHACIATIQTTLNAGTVF 110


>ref|XP_006408860.1| hypothetical protein EUTSA_v10002189mg, partial [Eutrema
           salsugineum] gi|557110016|gb|ESQ50313.1| hypothetical
           protein EUTSA_v10002189mg, partial [Eutrema salsugineum]
          Length = 261

 Score = 49.7 bits (117), Expect(2) = 8e-06
 Identities = 21/51 (41%), Positives = 37/51 (72%)
 Frame = -1

Query: 295 LPSMQVLLILFSNFDISLEGPHL*EALEIQVQIQGAPLLSSILITTLHYQI 143
           L + +V + LF NF++SL+ P+L + L++Q+Q+ GAP+    ++ TLH+QI
Sbjct: 113 LHARKVFVTLFPNFNVSLQDPNLLKTLKVQLQLTGAPMQEKSVVATLHHQI 163



 Score = 25.4 bits (54), Expect(2) = 8e-06
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 143 LTYRLQTHVIDLVKPTS 93
           + YR+Q H +DLV P+S
Sbjct: 163 IVYRIQDHALDLVLPSS 179


Top