BLASTX nr result
ID: Sinomenium21_contig00045977
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00045977
(508 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007221496.1| hypothetical protein PRUPE_ppa010066mg [Prun... 72 6e-11
ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245... 64 2e-08
ref|XP_006842978.1| hypothetical protein AMTR_s00076p00074970 [A... 64 3e-08
sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding pro... 62 1e-07
ref|XP_006844081.1| hypothetical protein AMTR_s00006p00251360 [A... 60 4e-07
ref|XP_002519724.1| chlorophyll A/B binding protein, putative [R... 60 4e-07
gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [... 59 5e-07
dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein... 59 7e-07
ref|XP_002515206.1| chlorophyll A/B binding protein, putative [R... 59 7e-07
ref|XP_002524616.1| chlorophyll A/B binding protein, putative [R... 59 9e-07
emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [So... 58 1e-06
dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein... 58 1e-06
ref|XP_002316737.1| Chlorophyll a-b binding protein 2 [Populus t... 58 1e-06
gb|AHM26643.1| a-b binding protein [Pyrus x bretschneideri] 58 2e-06
ref|XP_006364025.1| PREDICTED: chlorophyll a-b binding protein 5... 58 2e-06
ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3... 58 2e-06
ref|XP_004293579.1| PREDICTED: chlorophyll a-b binding protein 4... 58 2e-06
gb|AFO67221.1| putative chlorophyll a/b binding protein, partial... 58 2e-06
emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [S... 58 2e-06
gb|EYU43278.1| hypothetical protein MIMGU_mgv1a011933mg [Mimulus... 57 2e-06
>ref|XP_007221496.1| hypothetical protein PRUPE_ppa010066mg [Prunus persica]
gi|462418246|gb|EMJ22695.1| hypothetical protein
PRUPE_ppa010066mg [Prunus persica]
Length = 265
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = -3
Query: 152 MATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
MATMALSSP F GKA+ LN+Q+E + +QGNGRVSMR+ A K AVSSGSPW
Sbjct: 1 MATMALSSP-FTGKAIPLNTQTEFSTVQGNGRVSMRRAARKPAVSSGSPW 49
>ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245729 [Solanum
lycopersicum]
Length = 554
Score = 63.9 bits (154), Expect = 2e-08
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = -3
Query: 227 PGSSTHQSIHKAIHTNTFSSFKATNMATMALSSPAFAGKALSLN-SQSEITNIQGNGRVS 51
PG S+ ++ +H+ S +TMALSS FAGKA+ L+ S SEIT GNGRV+
Sbjct: 265 PGKSSFKTTFLFVHSRVSHSTSIMATSTMALSSSTFAGKAVKLSPSSSEIT---GNGRVT 321
Query: 50 MRKTAGKA-AVSSGSPW 3
MRKTA KA SSGSPW
Sbjct: 322 MRKTATKAKPASSGSPW 338
>ref|XP_006842978.1| hypothetical protein AMTR_s00076p00074970 [Amborella trichopoda]
gi|548845175|gb|ERN04653.1| hypothetical protein
AMTR_s00076p00074970 [Amborella trichopoda]
Length = 214
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/51 (62%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = -3
Query: 152 MATMALSSPAFAGKALSLNSQSEITN-IQGNGRVSMRKTAGKAAVSSGSPW 3
MATM+LSSP+FAGKA+ +++QSE I G+GRVSM+K A K ++SSGSPW
Sbjct: 1 MATMSLSSPSFAGKAVPVSTQSEFGGPIGGDGRVSMKKIASKPSLSSGSPW 51
>sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor gi|19829|emb|CAA36958.1| unnamed protein
product [Nicotiana tabacum]
Length = 267
Score = 61.6 bits (148), Expect = 1e-07
Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLN-SQSEITNIQGNGRVSMRKTAGKA-AVSSGSPW 3
+TMALSSP+FAGKA+ L+ S SEIT GNG+V+MRKTA KA VSSGSPW
Sbjct: 4 STMALSSPSFAGKAVKLSPSSSEIT---GNGKVTMRKTASKAKTVSSGSPW 51
>ref|XP_006844081.1| hypothetical protein AMTR_s00006p00251360 [Amborella trichopoda]
gi|548846480|gb|ERN05756.1| hypothetical protein
AMTR_s00006p00251360 [Amborella trichopoda]
Length = 266
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/51 (60%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Frame = -3
Query: 152 MATMALSSPAFAGKALSLNSQSEI-TNIQGNGRVSMRKTAGKAAVSSGSPW 3
MATM+LSSP+FAGKA+ + ++SE + ++G+GRVSMRK+A +A V SGSPW
Sbjct: 1 MATMSLSSPSFAGKAVPVATRSEFGSTVRGDGRVSMRKSASRAPV-SGSPW 50
>ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 265
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
+TMALSSP+FAGKA+ L+ + + GNGRVSMRKTA K +VSSGSPW
Sbjct: 4 STMALSSPSFAGKAVKLSPSAP--ELMGNGRVSMRKTAAK-SVSSGSPW 49
>gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 59.3 bits (142), Expect = 5e-07
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
ATMALSSP+FAGKA+ L + + + G GRV+MRK GK A SSGSPW
Sbjct: 3 ATMALSSPSFAGKAVKLAPSA--SGVLGQGRVTMRKAGGKPAASSGSPW 49
>dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 58.9 bits (141), Expect = 7e-07
Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLN-SQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
ATMALSSP+FAG+A+ L+ S SEIT GNGRVSMRKTA K VSS SPW
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEIT---GNGRVSMRKTAAK-PVSSSSPW 49
>ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 267
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Frame = -3
Query: 152 MATMALSSPAFAGKALSLNSQSEI--TNIQGNGRVSMRKTAGKAAVSSGSPW 3
MATM LSS F GKA+ L++Q+E+ T NGRV+MRKTAGK A SSGSPW
Sbjct: 1 MATMTLSS-TFTGKAVPLSAQTELPATVRSSNGRVTMRKTAGKPAASSGSPW 51
>ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 265
Score = 58.5 bits (140), Expect = 9e-07
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
+TMALSSP+FAGKA+ L+ + + GNGRVSMRKTA K VSSGSPW
Sbjct: 4 STMALSSPSFAGKAVKLSPSA--PELMGNGRVSMRKTAAK-NVSSGSPW 49
>emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 58.2 bits (139), Expect = 1e-06
Identities = 36/51 (70%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLN-SQSEITNIQGNGRVSMRKTAGKA-AVSSGSPW 3
ATMALSS FAGKA+ L+ S SEIT GNGR +MRKTA KA VSSGSPW
Sbjct: 4 ATMALSSSTFAGKAVKLSPSSSEIT---GNGRFTMRKTAAKAKPVSSGSPW 51
>dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 58.2 bits (139), Expect = 1e-06
Identities = 35/51 (68%), Positives = 41/51 (80%), Gaps = 2/51 (3%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLN-SQSEITNIQGNGRVSMRKTAGKA-AVSSGSPW 3
+TMALSS +FAGKA+ L+ S SEIT GNG+V+MRKTA KA VSSGSPW
Sbjct: 4 STMALSSSSFAGKAVKLSPSSSEIT---GNGKVTMRKTASKAKPVSSGSPW 51
>ref|XP_002316737.1| Chlorophyll a-b binding protein 2 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| Chlorophyll a-b binding
protein 2 [Populus trichocarpa]
Length = 264
Score = 58.2 bits (139), Expect = 1e-06
Identities = 33/49 (67%), Positives = 36/49 (73%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
ATMALSSPAFAGKA+ L+ S + GNGRVSMRKT VSSGSPW
Sbjct: 4 ATMALSSPAFAGKAVKLSPSS--PELMGNGRVSMRKTT--KPVSSGSPW 48
>gb|AHM26643.1| a-b binding protein [Pyrus x bretschneideri]
Length = 264
Score = 57.8 bits (138), Expect = 2e-06
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
A+MALSSP FAGKA+ L+ + T + GNGRVSMRKTA K VSSGSPW
Sbjct: 3 ASMALSSPTFAGKAVQLSPGA--TELFGNGRVSMRKTATK-QVSSGSPW 48
>ref|XP_006364025.1| PREDICTED: chlorophyll a-b binding protein 50, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 57.8 bits (138), Expect = 2e-06
Identities = 34/51 (66%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLN-SQSEITNIQGNGRVSMRKTAGKA-AVSSGSPW 3
+TMALSSP+FAGKA+ L+ S SEIT GNG+V MRKT KA +SSGSPW
Sbjct: 4 STMALSSPSFAGKAVKLSPSSSEIT---GNGKVMMRKTVTKAKPISSGSPW 51
>ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 57.8 bits (138), Expect = 2e-06
Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLN-SQSEITNIQGNGRVSMRKTAGKA-AVSSGSPW 3
+TMALSS +FAGKA+ L+ S SEIT GNGRV+MRKTA KA SSGSPW
Sbjct: 4 STMALSSSSFAGKAVKLSPSSSEIT---GNGRVTMRKTAAKAKPASSGSPW 51
>ref|XP_004293579.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 263
Score = 57.8 bits (138), Expect = 2e-06
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
+TMALSSP FAGKA+ L T + G GR+SMRKT GK AVSSGSPW
Sbjct: 4 STMALSSPTFAGKAVQLAP----TEVFGTGRISMRKTVGK-AVSSGSPW 47
>gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 57.8 bits (138), Expect = 2e-06
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAAVSSGSPW 3
+TMALSSP+FAGKA+ + S + + GNGR+SMRKT K SSGSPW
Sbjct: 4 STMALSSPSFAGKAVKVAPSS--SELFGNGRISMRKTGKKPVASSGSPW 50
>emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b
binding protein LHCb1.1 precursor [Spinacia oleracea]
Length = 267
Score = 57.8 bits (138), Expect = 2e-06
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -3
Query: 149 ATMALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGKAA-VSSGSPW 3
+TMALSSPAF GKA+ LN + +++ G GR+SMRK+AGK VSSGSPW
Sbjct: 4 STMALSSPAFGGKAVKLNPST--SDMIGEGRISMRKSAGKPKNVSSGSPW 51
>gb|EYU43278.1| hypothetical protein MIMGU_mgv1a011933mg [Mimulus guttatus]
Length = 266
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Frame = -3
Query: 143 MALSSPAFAGKALSLNSQSEITNIQGNGRVSMRKTAGK---AAVSSGSPW 3
M+LSSP+FAG+A+ ++ + TN NGRVSMRKTAGK SSGSPW
Sbjct: 1 MSLSSPSFAGQAVKISPEIAATNSNSNGRVSMRKTAGKPKPKPASSGSPW 50