BLASTX nr result
ID: Sinomenium21_contig00045771
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00045771
(491 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80131.1| hypothetical protein VITISV_012432 [Vitis vinifera] 66 4e-24
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 70 2e-22
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 65 3e-22
gb|AAK29467.1| polyprotein-like [Solanum chilense] 69 2e-19
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 60 3e-18
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 47 1e-13
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera] 75 2e-13
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran... 52 3e-13
ref|XP_003376808.1| retrovirus-related Pol polyprotein from tran... 52 3e-13
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 47 5e-13
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 48 1e-12
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 45 1e-12
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 46 1e-12
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera] 70 2e-12
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 52 2e-12
emb|CAN62498.1| hypothetical protein VITISV_000081 [Vitis vinifera] 50 3e-12
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 48 5e-12
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 48 5e-12
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe... 46 6e-12
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera] 71 8e-12
>emb|CAN80131.1| hypothetical protein VITISV_012432 [Vitis vinifera]
Length = 881
Score = 65.9 bits (159), Expect(3) = 4e-24
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSH-KKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
L C HCL G + F++ H +K + VY DV G MK KTLGG LYFVTFIDD SR
Sbjct: 316 LKMCAHCLAGKQTRVAFKTHXHTRKPGMLDLVYYDVYGPMKTKTLGGXLYFVTFIDDHSR 375
Query: 250 KVWHTP*KPKTRFL 209
K+W K K + L
Sbjct: 376 KIWVXTLKTKDQVL 389
Score = 64.3 bits (155), Expect(3) = 4e-24
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Frame = -1
Query: 233 LKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIGPFEER------RKRVFSPQPP 72
LKTKDQVL++FK FH + ER ++LKCIR DNG EY GPF+E R + P+ P
Sbjct: 382 LKTKDQVLEVFKXFHALAERQXGEKLKCIRTDNGGEYSGPFDEYCRQHGIRNQKTPPKTP 441
Query: 71 RL 66
+L
Sbjct: 442 QL 443
Score = 26.9 bits (58), Expect(3) = 4e-24
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL IL ++ L
Sbjct: 291 LGHMSEKGLMILAKKNL 307
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 70.5 bits (171), Expect(3) = 2e-22
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Frame = -2
Query: 424 GTHLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDA 257
GT + C +CL G ++FQ+ S +K + VYSDVCG M+++++GG YFVTFIDDA
Sbjct: 451 GTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDA 510
Query: 256 SRKVW 242
SRK+W
Sbjct: 511 SRKLW 515
Score = 52.8 bits (125), Expect(3) = 2e-22
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIG-PFEE 105
Y LKTKDQV +F+ FH +VER T ++LK +R DNG EY FEE
Sbjct: 517 YILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEE 562
Score = 28.1 bits (61), Expect(3) = 2e-22
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
+GHMSE GLQIL ++ L
Sbjct: 429 MGHMSEKGLQILAKKSL 445
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 65.5 bits (158), Expect(2) = 3e-22
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Frame = -2
Query: 451 QKTTFPKVIGTHLNSCTHCLIG----LTFQSWSH-KKN*YFEFVYSDVCGLMKVKTLGGA 287
+K+ V L+ C HCL G ++F S +K+ + ++SDVCG MKV++LGGA
Sbjct: 437 KKSKLSGVKEAKLDKCVHCLAGKQRRVSFMSHPPTRKSEPLDLIHSDVCGPMKVRSLGGA 496
Query: 286 LYFVTFIDDASRKVW 242
YFVTFIDD SRK+W
Sbjct: 497 SYFVTFIDDYSRKLW 511
Score = 65.5 bits (158), Expect(2) = 3e-22
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIGPFEERRKR 93
Y LK K VL +FK FH +VER T K+LKCIR DNG EY GPF+E +R
Sbjct: 513 YTLKHKSDVLGVFKEFHALVERQTGKKLKCIRTDNGGEYCGPFDEYCRR 561
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 68.6 bits (166), Expect(3) = 2e-19
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Frame = -2
Query: 424 GTHLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDA 257
GT + C + L G ++FQ+ S +K+ + VYSDVCG M+++++GG YFVTFIDDA
Sbjct: 452 GTTIKPCNYWLFGKQHRVSFQTSSERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDA 511
Query: 256 SRKVW 242
SRK+W
Sbjct: 512 SRKLW 516
Score = 46.2 bits (108), Expect(3) = 2e-19
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIG-PFEE 105
Y + KDQV +F+ FH +VER T ++ K +R DNG EY FEE
Sbjct: 518 YIFRAKDQVFQVFQKFHALVERETGRKRKRLRTDNGGEYTSREFEE 563
Score = 26.2 bits (56), Expect(3) = 2e-19
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
+GH SE GLQIL+++ L
Sbjct: 430 MGHTSEKGLQILSKKSL 446
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 60.5 bits (145), Expect(2) = 3e-18
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIGPFE 108
Y LKTKDQV +FK F +VER T K+LKCIR DNG EY G F+
Sbjct: 515 YTLKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQFD 558
Score = 56.6 bits (135), Expect(2) = 3e-18
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Frame = -2
Query: 451 QKTTFPKVIGTHLNSCTHCLIG----LTFQSW--SHKKN*YFEFVYSDVCGLMKVKTLGG 290
+K P + L C CL G ++F+ + S ++N + V+SDVCG K K+LGG
Sbjct: 440 KKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQN-VLDLVHSDVCGPFK-KSLGG 497
Query: 289 ALYFVTFIDDASRKVW 242
A YFVTFIDD SRK W
Sbjct: 498 ARYFVTFIDDHSRKTW 513
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 47.4 bits (111), Expect(3) = 1e-13
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI 120
Y +K K V +FK+F +E TRK++KC+R DNG EYI
Sbjct: 517 YPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYI 556
Score = 46.6 bits (109), Expect(3) = 1e-13
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -2
Query: 418 HLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
+L C HC+I L F + + + ++SDV ++ +LGGA YFV+FIDD SR
Sbjct: 454 NLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEI-SLGGARYFVSFIDDYSR 512
Query: 250 KVWHTP*KPKT 218
++W P K K+
Sbjct: 513 RLWVYPIKKKS 523
Score = 27.3 bits (59), Expect(3) = 1e-13
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL++L R L
Sbjct: 430 LGHMSERGLKVLAERNL 446
>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
Length = 1317
Score = 75.1 bits (183), Expect(2) = 2e-13
Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSH-KKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
L C HCL G + F++ H +K F+ VYSDVCG MK KTLGG+LYFVTFIDD SR
Sbjct: 402 LKRCAHCLAGKQTRVAFKTLRHTRKPGMFDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSR 461
Query: 250 KVWHTP*KPKTRFL 209
K+W K K + L
Sbjct: 462 KIWVYTLKTKDQVL 475
Score = 26.2 bits (56), Expect(2) = 2e-13
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL IL + L
Sbjct: 377 LGHMSEKGLMILAKNNL 393
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIGPFEE 105
Y LKTKDQVLD+FK FH +VER + ++LKCIR DNG EY GPF+E
Sbjct: 466 YTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFDE 510
>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974954|gb|EFV58419.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1003
Score = 52.0 bits (123), Expect(2) = 3e-13
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -1
Query: 254 QEGLAYALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI 120
++ Y LK K++VL FK F +VER T K++KC+R DNGREY+
Sbjct: 206 RKSFVYFLKHKNEVLSKFKDFIAMVERQTSKRVKCLRTDNGREYV 250
Score = 48.5 bits (114), Expect(2) = 3e-13
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Frame = -2
Query: 406 CTHCLIG----LTF-QSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASRK 248
C CL G L F +S + + E V+SD+CG M+V ++GGA YF++FIDD SRK
Sbjct: 150 CVTCLKGKQCRLPFPKSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRK 207
>ref|XP_003376808.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974460|gb|EFV57947.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1324
Score = 51.6 bits (122), Expect(2) = 3e-13
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -1
Query: 254 QEGLAYALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI 120
++ Y LK K++VL FK F +VER T K++KC+R DNGREY+
Sbjct: 513 RKSFVYFLKHKNEVLPKFKDFIAMVERQTSKRVKCLRTDNGREYV 557
Score = 48.5 bits (114), Expect(2) = 3e-13
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Frame = -2
Query: 406 CTHCLIG----LTF-QSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASRK 248
C CL G L F +S + + E V+SD+CG M+V ++GGA YF++FIDD SRK
Sbjct: 457 CVTCLKGKQCRLPFPKSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRK 514
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 47.4 bits (111), Expect(3) = 5e-13
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -2
Query: 418 HLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
+L C HC+I L F + + + ++SDV K+ +LGGA YFV+FIDD SR
Sbjct: 454 NLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPKL-SLGGARYFVSFIDDYSR 512
Query: 250 KVWHTP*KPKT 218
++W P K K+
Sbjct: 513 RLWVYPIKKKS 523
Score = 44.3 bits (103), Expect(3) = 5e-13
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI 120
Y +K K V +FK+F +E T K++KC+R DNG EY+
Sbjct: 517 YPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYV 556
Score = 27.3 bits (59), Expect(3) = 5e-13
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL++L R L
Sbjct: 430 LGHMSERGLKVLVERNL 446
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 48.1 bits (113), Expect(3) = 1e-12
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = -2
Query: 451 QKTTFPKVIGTHLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGAL 284
++ P + L C HC+I L F + + + ++SDV +V ++GGA
Sbjct: 443 ERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVWESPEV-SIGGAK 501
Query: 283 YFVTFIDDASRKVWHTP*KPKT 218
YFV+FIDD SR++W P K K+
Sbjct: 502 YFVSFIDDYSRRLWVYPIKKKS 523
Score = 42.4 bits (98), Expect(3) = 1e-12
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREY 123
Y +K K V +FK F VE T K++KC+R DNG EY
Sbjct: 517 YPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEY 555
Score = 27.3 bits (59), Expect(3) = 1e-12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL++L R L
Sbjct: 430 LGHMSERGLKVLAERNL 446
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 45.4 bits (106), Expect(3) = 1e-12
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -2
Query: 418 HLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
+L C HC++ L F + + + ++SDV ++ +LGGA YFV+FIDD SR
Sbjct: 454 NLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVWESPEI-SLGGARYFVSFIDDYSR 512
Query: 250 KVWHTP*KPKT 218
++W P K K+
Sbjct: 513 RLWVYPIKKKS 523
Score = 45.1 bits (105), Expect(3) = 1e-12
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI 120
Y +K K V +FK+F +E T K++KC+R DNG EY+
Sbjct: 517 YPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYV 556
Score = 27.3 bits (59), Expect(3) = 1e-12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL++L R L
Sbjct: 430 LGHMSERGLKVLVERNL 446
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 45.8 bits (107), Expect(3) = 1e-12
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -2
Query: 418 HLNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
+L C HC+I L F + + + ++SDV ++ +LGGA YFV+FIDD SR
Sbjct: 454 NLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEL-SLGGARYFVSFIDDYSR 512
Query: 250 KVWHTP*KPKT 218
++W P K K+
Sbjct: 513 RLWVYPIKKKS 523
Score = 44.3 bits (103), Expect(3) = 1e-12
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI 120
Y +K K V +FK+F +E T K++KC+R DNG EY+
Sbjct: 517 YPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYV 556
Score = 27.3 bits (59), Expect(3) = 1e-12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL++L R L
Sbjct: 430 LGHMSERGLKVLVERNL 446
>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
Length = 1207
Score = 70.5 bits (171), Expect(2) = 2e-12
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSH-KKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
L C HCL G + F++ + +K + VYSDVCG MK KTLGG+LYFVTFIDD SR
Sbjct: 334 LKRCAHCLAGKQTRVAFKTLRYTRKPGMLDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSR 393
Query: 250 KVWHTP*KPKTRFL 209
K+W K K + L
Sbjct: 394 KIWVYTLKTKDQVL 407
Score = 26.9 bits (58), Expect(2) = 2e-12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL IL ++ L
Sbjct: 309 LGHMSEKGLMILAKKNL 325
Score = 70.5 bits (171), Expect = 2e-10
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 6/64 (9%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIGPFEER------RKRVFSPQ 78
Y LKTKDQVLD+FK FH +VER + ++LKCIR DNG EY PF+E R + SP+
Sbjct: 398 YTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSSPFDEYCRQHGIRHQKTSPK 457
Query: 77 PPRL 66
P+L
Sbjct: 458 TPQL 461
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 51.6 bits (122), Expect(3) = 2e-12
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASRK 248
L C C++G + F SH N E+++SD+ G V++ G Y+VTFIDD SRK
Sbjct: 777 LKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRK 836
Query: 247 VW 242
VW
Sbjct: 837 VW 838
Score = 38.9 bits (89), Expect(3) = 2e-12
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREY 123
Y LK KD+V FK + +VE+ T K +K +R DNG E+
Sbjct: 840 YFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEF 878
Score = 26.2 bits (56), Expect(3) = 2e-12
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL IL+++ L
Sbjct: 752 LGHMSEKGLSILSKQGL 768
>emb|CAN62498.1| hypothetical protein VITISV_000081 [Vitis vinifera]
Length = 1054
Score = 50.4 bits (119), Expect(3) = 3e-12
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = -2
Query: 448 KTTFPKVIGTHLNSCTHCLIGLT-----FQSWSHKKN*YFEFVYSDVCGLMKVKTLGGAL 284
K P++ + C C++G F++ K E V++D+ G V +LGG+
Sbjct: 309 KGKLPELKSIDFDMCESCILGKQKNVSFFKTGRTLKAEKLELVHTDLWGSSPVASLGGSR 368
Query: 283 YFVTFIDDASRKVW 242
Y++TFIDD+SRKVW
Sbjct: 369 YYITFIDDSSRKVW 382
Score = 43.9 bits (102), Expect(3) = 3e-12
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYI-GPFEE 105
Y LK K V + FK + ++VE T ++KC+R DNG EYI G F E
Sbjct: 384 YFLKNKSDVFETFKKWKVMVETETGLKIKCLRSDNGGEYIDGRFSE 429
Score = 22.3 bits (46), Expect(3) = 3e-12
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 489 LGHMSENGLQIL 454
LGHMSE G+++L
Sbjct: 295 LGHMSEKGMKML 306
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 47.8 bits (112), Expect(3) = 5e-12
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASRK 248
L C HC+ G + F + +H ++V+SD+ G + GGA Y +T +DD SRK
Sbjct: 500 LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRK 559
Query: 247 VW 242
VW
Sbjct: 560 VW 561
Score = 42.7 bits (99), Expect(3) = 5e-12
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREY 123
Y LK K Q D+FK + +VER T K++K +R DNG E+
Sbjct: 563 YFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEF 601
Score = 25.0 bits (53), Expect(3) = 5e-12
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL L++R+L
Sbjct: 475 LGHMSEIGLAELSKREL 491
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 47.8 bits (112), Expect(3) = 5e-12
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASRK 248
L C HC+ G + F + +H ++V+SD+ G + GGA Y +T +DD SRK
Sbjct: 500 LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRK 559
Query: 247 VW 242
VW
Sbjct: 560 VW 561
Score = 42.7 bits (99), Expect(3) = 5e-12
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREY 123
Y LK K Q D+FK + +VER T K++K +R DNG E+
Sbjct: 563 YFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEF 601
Score = 25.0 bits (53), Expect(3) = 5e-12
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL L++R+L
Sbjct: 475 LGHMSEIGLAELSKREL 491
>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
erythrorhizon]
Length = 244
Score = 45.8 bits (107), Expect(3) = 6e-12
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = -2
Query: 406 CTHCLIGLT----FQSWSHKKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASRKVW 242
C H + G T F + HK ++V++D+ G KV + G+ YFVTF+DD SR W
Sbjct: 143 CEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLWGPAKVNSKDGSWYFVTFVDDYSRYAW 201
Score = 45.4 bits (106), Expect(3) = 6e-12
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREY 123
Y LK K++V DIFK + +VE T ++LK +R DNG+EY
Sbjct: 203 YFLKHKNEVFDIFKQWRAMVENRTGRKLKTVRSDNGKEY 241
Score = 24.3 bits (51), Expect(3) = 6e-12
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQLFQ 433
LGHMSE GL +L+ + L +
Sbjct: 115 LGHMSEKGLSLLSGQGLLK 133
>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
Length = 1362
Score = 68.6 bits (166), Expect(2) = 8e-12
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Frame = -2
Query: 415 LNSCTHCLIG----LTFQSWSH-KKN*YFEFVYSDVCGLMKVKTLGGALYFVTFIDDASR 251
L C HCL G + F++ H +K + VYSDV G MK KTLGG+LYFVTFIDD SR
Sbjct: 431 LKRCAHCLAGKQTRVAFKTLHHTRKPGMLDLVYSDVYGPMKTKTLGGSLYFVTFIDDHSR 490
Query: 250 KVWHTP*KPKTRFL 209
K+W K K + L
Sbjct: 491 KIWVYTLKTKDQVL 504
Score = 26.9 bits (58), Expect(2) = 8e-12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 489 LGHMSENGLQILTRRQL 439
LGHMSE GL IL ++ L
Sbjct: 406 LGHMSEKGLMILAKKNL 422
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -1
Query: 239 YALKTKDQVLDIFKSFHMIVERATRKQLKCIRIDNGREYIGPFEE 105
Y LKTKDQVLD+FK FH +VER + ++LKCIR DNG EY GPF+E
Sbjct: 495 YTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFDE 539