BLASTX nr result
ID: Sinomenium21_contig00044513
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00044513
(1160 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008081356.1| RNA polymerase beta' subunit (chloroplast) [... 669 0.0
ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis ... 668 0.0
ref|YP_008965484.1| RNA polymerase beta [Pyrus spinosa] gi|56566... 667 0.0
ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifoli... 667 0.0
gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma af... 667 0.0
gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum] 667 0.0
gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum] 664 0.0
gb|AHE41641.1| RNA polymerase beta' subunit protein, partial (ch... 664 0.0
ref|YP_008081448.1| RNA polymerase beta' subunit (chloroplast) [... 664 0.0
gb|AFB77000.1| DNA-directed RNA polymerase beta' chain, partial ... 664 0.0
gb|ADD31185.1| RNA polymerase beta' subunit protein [Trochodendr... 664 0.0
gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (ch... 663 0.0
gb|AHE41640.1| RNA polymerase beta' subunit protein, partial (ch... 662 0.0
gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (ch... 662 0.0
ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina... 662 0.0
gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (ch... 662 0.0
ref|YP_004563858.1| RNA polymerase beta [Nelumbo lutea] gi|22447... 662 0.0
gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acu... 662 0.0
ref|YP_009020029.1| RNA polymerase beta [Prunus mume] gi|5890610... 661 0.0
ref|YP_003359350.2| RNA polymerase beta I subunit (chloroplast) ... 661 0.0
>ref|YP_008081356.1| RNA polymerase beta' subunit (chloroplast) [Tetracentron sinense]
gi|479279194|gb|AGJ72048.1| RNA polymerase beta' subunit
(chloroplast) [Tetracentron sinense]
Length = 682
Score = 669 bits (1725), Expect = 0.0
Identities = 341/388 (87%), Positives = 348/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLAD DLR+I DYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 REQLADPDLRIITDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPERMV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 559
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
YRNY+NE+ DDNNYKYT KEPYF SSY
Sbjct: 560 YRNYKNERIDDNNYKYTKEKEPYFFSSY 587
>ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia]
gi|226933873|gb|ACO92006.1| RNA polymerase beta' subunit
[Megaleranthis saniculifolia]
Length = 680
Score = 668 bits (1724), Expect = 0.0
Identities = 340/386 (88%), Positives = 345/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLAD DLRLI D SL+EWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 REQLADPDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPERMV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELF TFVIRGLIRQHVASNIGVAKSKIREK PIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFHTFVIRGLIRQHVASNIGVAKSKIREKAPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHI 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNP +
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWN 559
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
+RNYQNEK DDNN+KYTKEPYF SSY
Sbjct: 560 HRNYQNEKIDDNNHKYTKEPYFCSSY 585
>ref|YP_008965484.1| RNA polymerase beta [Pyrus spinosa] gi|565666456|emb|CDI73556.1| RNA
polymerase beta [Pyrus spinosa]
Length = 687
Score = 667 bits (1721), Expect = 0.0
Identities = 334/386 (86%), Positives = 346/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRK+GRR+DFLVRRMELAKHFIRTN+
Sbjct: 207 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRRDFLVRRMELAKHFIRTNI 266
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 267 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 326
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 327 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 386
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWE
Sbjct: 387 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWE 446
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQM
Sbjct: 447 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHV 506
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 507 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 566
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
RNYQN++ DDNNYKYTKEP+F +SY
Sbjct: 567 RRNYQNKRIDDNNYKYTKEPFFCNSY 592
>ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
gi|345433552|dbj|BAK69374.1| RNA polymerase beta' subunit
[Pyrus pyrifolia]
Length = 681
Score = 667 bits (1721), Expect = 0.0
Identities = 334/386 (86%), Positives = 346/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRK+GRR+DFLVRRMELAKHFIRTN+
Sbjct: 201 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRRDFLVRRMELAKHFIRTNI 260
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWE 440
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQM
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHV 500
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 501 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 560
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
RNYQN++ DDNNYKYTKEP+F +SY
Sbjct: 561 RRNYQNKRIDDNNYKYTKEPFFCNSY 586
>gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma aff. cuneifolia Moore
333]
Length = 703
Score = 667 bits (1721), Expect = 0.0
Identities = 339/388 (87%), Positives = 348/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
+EQLADLDLR+I DYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 KEQLADLDLRIITDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPERMV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDG+NKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGYNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQHVA NIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVAPNIGVAKSKIREKEPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLTIGNRRGICANRYNPC+
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPCN 559
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
+RNYQN++ DDNN KYT KEPYF SSY
Sbjct: 560 HRNYQNKRIDDNNEKYTKEKEPYFCSSY 587
>gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]
Length = 682
Score = 667 bits (1721), Expect = 0.0
Identities = 342/388 (88%), Positives = 346/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLRLIID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 REQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
E E MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EAEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQ VASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDMLMGLYVLTIGNRRGICANRYNPC+
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNRRGICANRYNPCN 559
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
+ NYQNEK DDNNYKYT KEPYF SSY
Sbjct: 560 HLNYQNEKIDDNNYKYTKEKEPYFCSSY 587
>gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]
Length = 682
Score = 664 bits (1714), Expect = 0.0
Identities = 340/388 (87%), Positives = 345/388 (88%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLRLIID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 REQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
E E MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EAEWMVLCLLPVLPPDLRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPRE+AIELFQTFVIRGLIRQ VASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREMAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR ICLHPLVCKGFNADFDGDQM
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDMLMGLYVLTIGNRRGICANRYNPC+
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNRRGICANRYNPCN 559
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
+ NYQNEK DDNNYKYT KEPYF SSY
Sbjct: 560 HLNYQNEKIDDNNYKYTKEKEPYFCSSY 587
>gb|AHE41641.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Disanthus cercidifolius subsp. longipes]
Length = 621
Score = 664 bits (1712), Expect = 0.0
Identities = 335/386 (86%), Positives = 346/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+
Sbjct: 166 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNI 225
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 226 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 285
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 286 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 345
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 346 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 405
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 406 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHV 465
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GN RGICANRYNPC+
Sbjct: 466 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNLRGICANRYNPCN 525
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
RNYQ ++ DDNNYKYTKEP+FS+SY
Sbjct: 526 RRNYQTKRIDDNNYKYTKEPFFSNSY 551
>ref|YP_008081448.1| RNA polymerase beta' subunit (chloroplast) [Trochodendron aralioides]
gi|479279287|gb|AGJ72140.1| RNA polymerase beta' subunit
(chloroplast) [Trochodendron aralioides]
Length = 689
Score = 664 bits (1712), Expect = 0.0
Identities = 339/395 (85%), Positives = 348/395 (88%), Gaps = 9/395 (2%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLAD DLR+I DYSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 REQLADPDLRIITDYSLIEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPERMV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 559
Query: 1081 YRNYQNEKSDDNNYKYT---------KEPYFSSSY 1158
+RNY+NE+ DDNNYKYT KEPYF SSY
Sbjct: 560 HRNYKNERIDDNNYKYTKEKDKYTKEKEPYFFSSY 594
>gb|AFB77000.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Didierea madagascariensis]
Length = 668
Score = 664 bits (1712), Expect = 0.0
Identities = 334/386 (86%), Positives = 345/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR IIDYS EWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+
Sbjct: 191 REQLADLDLRTIIDYSFGEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNI 250
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 251 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 310
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 311 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 370
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVW+
Sbjct: 371 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWK 430
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 431 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 490
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLT GNRRGICANRYNP +
Sbjct: 491 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPWN 550
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
++NYQNE+ DDNNYKYTKEP+F +SY
Sbjct: 551 HKNYQNERIDDNNYKYTKEPFFCNSY 576
>gb|ADD31185.1| RNA polymerase beta' subunit protein [Trochodendron aralioides]
Length = 696
Score = 664 bits (1712), Expect = 0.0
Identities = 339/395 (85%), Positives = 348/395 (88%), Gaps = 9/395 (2%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLAD DLR+I DYSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 207 REQLADPDLRIITDYSLIEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 266
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPERMV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 267 EPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 326
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 327 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 386
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE
Sbjct: 387 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 446
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 447 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHV 506
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 507 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 566
Query: 1081 YRNYQNEKSDDNNYKYT---------KEPYFSSSY 1158
+RNY+NE+ DDNNYKYT KEPYF SSY
Sbjct: 567 HRNYKNERIDDNNYKYTKEKDKYTKEKEPYFFSSY 601
>gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Rhodoleia championii]
Length = 639
Score = 663 bits (1711), Expect = 0.0
Identities = 337/388 (86%), Positives = 347/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+
Sbjct: 182 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNI 241
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 242 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 301
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 302 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 361
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 362 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 421
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 422 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHV 481
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 482 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 541
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
RNYQNE+ DDNNYKYT KEP+F +SY
Sbjct: 542 RRNYQNERIDDNNYKYTKEKEPFFCNSY 569
>gb|AHE41640.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Cercidiphyllum japonicum]
Length = 486
Score = 662 bits (1709), Expect = 0.0
Identities = 336/388 (86%), Positives = 347/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+
Sbjct: 30 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNI 89
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 90 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 149
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYS
Sbjct: 150 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYS 209
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 210 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 269
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 270 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHV 329
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 330 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 389
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
RNYQNE+ DDNNYKYT KEP+F +SY
Sbjct: 390 RRNYQNERIDDNNYKYTKEKEPFFCNSY 417
>gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Hamamelis mollis]
Length = 639
Score = 662 bits (1709), Expect = 0.0
Identities = 335/388 (86%), Positives = 347/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+
Sbjct: 182 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNI 241
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 242 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 301
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 302 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 361
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 362 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 421
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 422 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 481
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 482 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 541
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
RNYQ ++ DDNNY+YT KEP+F +SY
Sbjct: 542 RRNYQTKRIDDNNYEYTKEKEPFFCNSY 569
>ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina rupicola]
gi|371532614|gb|AEX31724.1| RNA polymerase beta I subunit
(chloroplast) [Pentactina rupicola]
Length = 682
Score = 662 bits (1709), Expect = 0.0
Identities = 335/388 (86%), Positives = 345/388 (88%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+
Sbjct: 200 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNI 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQM
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC
Sbjct: 500 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCH 559
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
RNYQN++ DDNNYKYT KEP+F +SY
Sbjct: 560 RRNYQNKRIDDNNYKYTKEKEPFFCNSY 587
>gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Daphniphyllum oldhamii]
Length = 639
Score = 662 bits (1708), Expect = 0.0
Identities = 334/388 (86%), Positives = 346/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+
Sbjct: 182 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNI 241
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 242 EPEWMVLGLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 301
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYS
Sbjct: 302 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYS 361
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 362 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHIASNIGVAKSKIREKEPIVWE 421
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
IL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 422 ILHEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 481
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GN+RGICANRYNPC+
Sbjct: 482 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNQRGICANRYNPCN 541
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
R YQNE+ DDNNYKYT KEP+F +SY
Sbjct: 542 RRKYQNERIDDNNYKYTKEKEPFFCNSY 569
>ref|YP_004563858.1| RNA polymerase beta [Nelumbo lutea] gi|224474125|gb|ACN49314.1| RNA
polymerase beta [Nelumbo lutea]
gi|383286883|gb|AFH01532.1| RNA polymerase beta
(chloroplast) [Nelumbo lutea]
Length = 682
Score = 662 bits (1708), Expect = 0.0
Identities = 339/388 (87%), Positives = 346/388 (89%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV
Sbjct: 200 REQLADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 259
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPERMV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 260 EPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 439
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQM
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHV 499
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSH NLLSPAIGDPIS+PTQDML+GLYVLT+GN RGICANRYNP +
Sbjct: 500 PLSLEAQAEARLLMFSHRNLLSPAIGDPISIPTQDMLIGLYVLTMGNHRGICANRYNPWN 559
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
RNYQNE+ DDNNYKYT KEPYF SSY
Sbjct: 560 RRNYQNERIDDNNYKYTKEKEPYFCSSY 587
>gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acuminata]
Length = 687
Score = 662 bits (1708), Expect = 0.0
Identities = 331/386 (85%), Positives = 346/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDL++IID SLVEWKELGE GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+
Sbjct: 207 REQLADLDLQIIIDKSLVEWKELGEGGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNI 266
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 267 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 326
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 327 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 386
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 387 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 446
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 447 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 506
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GNRRGIC NRYNPC+
Sbjct: 507 PLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLIGLYVLTSGNRRGICVNRYNPCN 566
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
RNYQN++SD+NNYKYTKEP+F +SY
Sbjct: 567 RRNYQNQRSDNNNYKYTKEPFFCNSY 592
>ref|YP_009020029.1| RNA polymerase beta [Prunus mume] gi|589061044|gb|AHK26865.1| RNA
polymerase beta [Prunus mume]
Length = 683
Score = 661 bits (1706), Expect = 0.0
Identities = 334/388 (86%), Positives = 345/388 (88%), Gaps = 2/388 (0%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+IIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+
Sbjct: 201 REQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNI 260
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWE 440
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
IL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQM
Sbjct: 441 ILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHV 500
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPC+
Sbjct: 501 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCN 560
Query: 1081 YRNYQNEKSDDNNYKYT--KEPYFSSSY 1158
RNYQN++ DDNNYKYT KEP+F +SY
Sbjct: 561 RRNYQNKRIDDNNYKYTKEKEPFFCNSY 588
>ref|YP_003359350.2| RNA polymerase beta I subunit (chloroplast) [Olea europaea]
gi|363413082|gb|ADA69917.2| RNA polymerase beta I subunit
(chloroplast) [Olea europaea]
Length = 685
Score = 661 bits (1706), Expect = 0.0
Identities = 331/386 (85%), Positives = 347/386 (89%)
Frame = +1
Query: 1 REQLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 180
REQLADLDLR+I+D SLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+
Sbjct: 202 REQLADLDLRIILDNSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNI 261
Query: 181 EPERMVXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGE 360
EPE MV IIQIDGGKLMSSDINELYRRVIY PGE
Sbjct: 262 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSKSTPGE 321
Query: 361 SVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 540
VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 322 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 381
Query: 541 GRSVIVVGPSLSLNRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWE 720
GRSVIVVGPSLSL+RCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAKSKIREKEPIVWE
Sbjct: 382 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 441
Query: 721 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQML*WR 900
ILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQM
Sbjct: 442 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 501
Query: 901 PLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCD 1080
PLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GNRRGIC NRYNP +
Sbjct: 502 PLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLIGLYVLTSGNRRGICVNRYNPWN 561
Query: 1081 YRNYQNEKSDDNNYKYTKEPYFSSSY 1158
RNYQN++S++NNYKYTKEP+FS+SY
Sbjct: 562 RRNYQNQRSNNNNYKYTKEPFFSNSY 587