BLASTX nr result

ID: Sinomenium21_contig00043932 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00043932
         (588 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_817236.1| ORF58d [Pinus koraiensis] gi|29469754|gb|AAO740...    60   3e-07
gb|AHV90367.1| ribosomal protein L2 (chloroplast) [Setaria italica]    57   4e-06
gb|ADD63067.1| ribosomal protein L2 [Potamophila parviflora] gi|...    57   4e-06
ref|YP_006503856.1| ribosomal protein L2 (chloroplast) [Datura s...    56   8e-06
ref|XP_003605908.1| 50S ribosomal protein L2 [Medicago truncatul...    56   8e-06
ref|XP_003599582.1| 50S ribosomal protein L2 [Medicago truncatul...    56   8e-06
ref|XP_003590807.1| 50S ribosomal protein L2 [Medicago truncatul...    56   8e-06

>ref|NP_817236.1| ORF58d [Pinus koraiensis] gi|29469754|gb|AAO74082.1| ORF58d [Pinus
           koraiensis]
          Length = 58

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 29/53 (54%), Positives = 38/53 (71%)
 Frame = +2

Query: 425 LGFGVSLIGFLQ*DKSIVQTALT*RQFPIDIGTFVPKTIISPIIAPLGCQKYL 583
           +GF V+ IG  +  K I+QTAL  R FPIDIG F P+ I+SPI+ PLGC+ Y+
Sbjct: 1   MGFAVNPIGCFRSRKLIIQTALRGRTFPIDIGAFGPERIVSPIMTPLGCRIYI 53


>gb|AHV90367.1| ribosomal protein L2 (chloroplast) [Setaria italica]
          Length = 132

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -1

Query: 588 EERYF*HPRGAIIGDIIVFGTKVPISMGNCLHVSAV 481
           E+RY  HPRGAIIGD IV GTKVPISMGN L +SAV
Sbjct: 97  EKRYILHPRGAIIGDTIVSGTKVPISMGNALPLSAV 132


>gb|ADD63067.1| ribosomal protein L2 [Potamophila parviflora]
           gi|290790877|gb|ADD63133.1| ribosomal protein L2
           [Microlaena stipoides]
          Length = 104

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -1

Query: 588 EERYF*HPRGAIIGDIIVFGTKVPISMGNCLHVSAV 481
           E+RY  HPRGAIIGD IV GTKVPISMGN L +SAV
Sbjct: 69  EKRYILHPRGAIIGDTIVSGTKVPISMGNALPLSAV 104


>ref|YP_006503856.1| ribosomal protein L2 (chloroplast) [Datura stramonium]
           gi|350996490|gb|AEQ37002.1| ribosomal protein L2
           (chloroplast) [Datura stramonium]
           gi|350996578|gb|AEQ37089.1| ribosomal protein L2 [Datura
           stramonium]
          Length = 268

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = -1

Query: 588 EERYF*HPRGAIIGDIIVFGTKVPISMGNCLHVSAV*TIDLS 463
           E+RY  HPRGAIIGD IV GT+VPI MGN L +SAV  I+++
Sbjct: 98  EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVHNIEIT 139


>ref|XP_003605908.1| 50S ribosomal protein L2 [Medicago truncatula]
           gi|355506963|gb|AES88105.1| 50S ribosomal protein L2
           [Medicago truncatula]
          Length = 236

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -1

Query: 588 EERYF*HPRGAIIGDIIVFGTKVPISMGNCLHVSAV 481
           E+RY  HPRGAIIGD IV+GT+VPI MGN L +SAV
Sbjct: 201 EKRYILHPRGAIIGDTIVYGTEVPIKMGNALPLSAV 236


>ref|XP_003599582.1| 50S ribosomal protein L2 [Medicago truncatula]
           gi|355488630|gb|AES69833.1| 50S ribosomal protein L2
           [Medicago truncatula]
          Length = 236

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -1

Query: 588 EERYF*HPRGAIIGDIIVFGTKVPISMGNCLHVSAV 481
           E+RY  HPRGAIIGD IV+GT+VPI MGN L +SAV
Sbjct: 201 EKRYILHPRGAIIGDTIVYGTEVPIKMGNALPLSAV 236


>ref|XP_003590807.1| 50S ribosomal protein L2 [Medicago truncatula]
           gi|355479855|gb|AES61058.1| 50S ribosomal protein L2
           [Medicago truncatula]
          Length = 94

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -1

Query: 588 EERYF*HPRGAIIGDIIVFGTKVPISMGNCLHVSAV 481
           E+RY  HPRGAIIGD IV+GT+VPI MGN L +SAV
Sbjct: 59  EKRYILHPRGAIIGDTIVYGTEVPIKMGNALPLSAV 94


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