BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00043542
         (327 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus]          131   3e-37
ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus] gi|1...   152   5e-35
dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus]             152   5e-35
gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus]             148   7e-34

>ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus]
          Length = 564

 Score =  131 bits (330), Expect(2) = 3e-37
 Identities = 62/75 (82%), Positives = 65/75 (86%)
 Frame = -2

Query: 326 GPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPI 147
           GPTPLKKLDFKYRNWIRFTTPKG++ISSIFCAIEVLPGFSFYGRTGSPRL V  TTV P 
Sbjct: 458 GPTPLKKLDFKYRNWIRFTTPKGRNISSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPT 517

Query: 146 SDVSASNSQSGDEDI 102
           +D S SNSQ GD  I
Sbjct: 518 ADASTSNSQGGDMKI 532



 Score = 49.3 bits (116), Expect(2) = 3e-37
 Identities = 26/35 (74%), Positives = 27/35 (77%)
 Frame = -3

Query: 112 MKTLEINTLLP*AGGEDEGFVQDQTLLGVDFLGIS 8
           MK LEIN LLP AGGEDE  VQDQ  LG+ FLGIS
Sbjct: 530 MKILEINILLPWAGGEDEARVQDQAPLGLMFLGIS 564


>ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus]
            gi|124106315|sp|Q8QVU9.2|POL2_CNSV RecName: Full=RNA2
            polyprotein; AltName: Full=P2; Contains: RecName:
            Full=Protein 2A; Short=P2A; Contains: RecName:
            Full=Movement protein; AltName: Full=2B-MP; Contains:
            RecName: Full=Coat protein; AltName: Full=2C-CP
            gi|84369993|dbj|BAB89370.2| polyprotien 2 [Cycas necrotic
            stunt virus]
          Length = 1240

 Score =  152 bits (384), Expect = 5e-35
 Identities = 72/83 (86%), Positives = 75/83 (90%)
 Frame = -2

Query: 326  GPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPI 147
            GPTPLKKLDFKYRNWIRFTTPKG++ISSIFCAIEVLPGFSFYGRTGSPRL V  TTV P 
Sbjct: 1141 GPTPLKKLDFKYRNWIRFTTPKGRNISSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPT 1200

Query: 146  SDVSASNSQSGDEDIGDQYSAAL 78
            +D S SNSQ GDEDIGDQYSAAL
Sbjct: 1201 ADASTSNSQGGDEDIGDQYSAAL 1223


>dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus]
          Length = 569

 Score =  152 bits (384), Expect = 5e-35
 Identities = 72/83 (86%), Positives = 77/83 (92%)
 Frame = -2

Query: 326 GPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPI 147
           GPTPLKKLDFKYRNWIRFTTPKG++ISSIFCAIEVLPGFSFYGRTGSPRL VA TTV P+
Sbjct: 470 GPTPLKKLDFKYRNWIRFTTPKGRNISSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPV 529

Query: 146 SDVSASNSQSGDEDIGDQYSAAL 78
           +D S SNSQSGDEDIGDQ +AAL
Sbjct: 530 ADASTSNSQSGDEDIGDQCAAAL 552


>gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus]
          Length = 1289

 Score =  148 bits (374), Expect = 7e-34
 Identities = 71/83 (85%), Positives = 74/83 (89%)
 Frame = -2

Query: 326  GPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPI 147
            GPTPL+KLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRL VA TTV PI
Sbjct: 1190 GPTPLRKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPI 1249

Query: 146  SDVSASNSQSGDEDIGDQYSAAL 78
             D S S+ Q GDED GDQY+AAL
Sbjct: 1250 VDASTSSLQGGDEDTGDQYAAAL 1272